Wall clock time and date at job start Tue Mar 9 2021 12:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.46555 * 2 1 4 4 C 1.50698 * 109.47300 * 120.00271 * 2 1 3 5 5 C 1.32770 * 124.71222 * 64.72393 * 4 2 1 6 6 C 1.44427 * 113.08208 * 180.26642 * 5 4 2 7 7 C 1.47189 * 123.46003 * 180.02562 * 6 5 4 8 8 O 1.21634 * 120.00148 * 359.95416 * 7 6 5 9 9 N 1.34774 * 119.99828 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84841 * 334.67054 * 10 9 7 12 12 C 1.53784 * 113.61269 * 105.86572 * 10 9 7 13 13 C 1.53954 * 87.01894 * 139.95183 * 12 10 9 14 14 H 1.09005 * 113.61410 * 89.19907 * 13 12 10 15 15 C 1.52992 * 113.66840 * 220.06721 * 13 12 10 16 16 N 1.46500 * 109.47151 * 272.56187 * 15 13 12 17 17 C 1.35311 * 125.87167 * 125.00011 * 16 15 13 18 18 C 1.35352 * 106.17861 * 179.97438 * 17 16 15 19 19 N 1.33778 * 106.49330 * 0.02562 * 18 17 16 20 20 N 1.28636 * 108.88397 * 359.73012 * 19 18 17 21 21 C 1.53784 * 87.11440 * 334.63840 * 13 12 10 22 22 C 1.36011 * 113.07669 * 0.02562 * 6 5 4 23 23 S 1.70440 * 110.82053 * 0.02562 * 22 6 5 24 24 H 0.96702 * 114.00321 * 60.00263 * 1 2 3 25 25 H 1.08996 * 109.46965 * 240.00527 * 2 1 3 26 26 H 1.48499 * 109.99985 * 60.00318 * 3 2 1 27 27 H 1.48508 * 109.99499 * 181.31679 * 3 2 1 28 28 H 1.08002 * 123.46009 * 0.23965 * 5 4 2 29 29 H 0.96995 * 120.00543 * 0.02562 * 9 7 6 30 30 H 1.09000 * 113.61263 * 254.52738 * 12 10 9 31 31 H 1.08996 * 113.61339 * 25.43187 * 12 10 9 32 32 H 1.09000 * 109.47272 * 32.56086 * 15 13 12 33 33 H 1.09004 * 109.47705 * 152.56086 * 15 13 12 34 34 H 1.08001 * 126.90790 * 0.02562 * 17 16 15 35 35 H 1.08000 * 126.75392 * 180.02562 * 18 17 16 36 36 H 1.09003 * 113.61393 * 270.81491 * 21 13 12 37 37 H 1.08997 * 113.61886 * 139.90707 * 21 13 12 38 38 H 1.08000 * 124.58757 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7441 -1.9992 1.4887 6 6 2.3276 -2.4161 2.7424 7 6 2.2562 -3.7951 3.2521 8 8 1.6821 -4.6525 2.6081 9 7 2.8266 -4.1076 4.4325 10 6 2.7561 -5.4803 4.9395 11 1 1.8994 -6.0312 4.5515 12 6 4.0841 -6.2475 4.8271 13 6 3.7691 -6.8355 6.2146 14 1 3.1903 -7.7584 6.1766 15 6 4.9906 -6.9377 7.1302 16 7 5.6695 -8.2149 6.8978 17 6 6.9736 -8.3720 6.5729 18 6 7.1748 -9.7052 6.4542 19 7 5.9991 -10.2908 6.7084 20 7 5.1293 -9.3807 6.9729 21 6 2.9141 -5.5821 6.4658 22 6 2.9499 -1.4034 3.4036 23 16 2.8373 0.0529 2.5254 24 1 -0.3934 0.4417 -0.7651 25 1 1.7923 -0.5137 -0.8900 26 1 1.5613 2.4679 1.2085 27 1 3.5345 1.7704 -0.0321 28 1 1.2098 -2.6672 0.8293 29 1 3.2839 -3.4237 4.9463 30 1 4.0933 -6.9899 4.0291 31 1 4.9619 -5.6014 4.8158 32 1 5.6756 -6.1176 6.9149 33 1 4.6708 -6.8803 8.1706 34 1 7.7067 -7.5907 6.4366 35 1 8.1019 -10.1991 6.2035 36 1 3.4715 -4.7538 6.9033 37 1 1.9802 -5.7882 6.9887 38 1 3.4478 -1.5080 4.3563 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:19 Heat of formation + Delta-G solvation = 95.576368 kcal Electronic energy + Delta-G solvation = -23331.487509 eV Core-core repulsion = 19691.635673 eV Total energy + Delta-G solvation = -3639.851836 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.17768 -41.46697 -39.93644 -38.63008 -37.20540 -35.85750 -34.44231 -31.98743 -31.92904 -29.54067 -27.02066 -26.83586 -26.25318 -24.26929 -23.56968 -22.40975 -21.89713 -20.99212 -20.27871 -18.91593 -18.53908 -18.37324 -18.26161 -17.55447 -16.82435 -16.53230 -16.21673 -16.17536 -15.82129 -15.68326 -15.07046 -15.00462 -14.71258 -14.33695 -13.96760 -13.94131 -13.80405 -13.67854 -13.52621 -13.07238 -12.72812 -12.69487 -12.48698 -12.33720 -12.10617 -12.03467 -11.84814 -11.62553 -11.17888 -10.92473 -10.47159 -10.33704 -10.25287 -10.04859 -9.61686 -5.19370 -0.46613 0.27141 0.61341 0.68171 0.71705 1.18620 1.50080 1.59642 1.62031 1.87317 2.01695 2.14685 3.26818 3.32425 3.34649 3.48975 3.64798 3.67827 3.70514 3.80634 3.92411 3.98258 4.05148 4.17196 4.29396 4.33789 4.38064 4.40090 4.57599 4.59765 4.62109 4.70020 4.78985 4.88173 4.91742 4.97648 5.05017 5.12024 5.26698 5.45629 5.70998 6.38729 6.82289 7.06608 7.53223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.052 4.052 3 Si 0.759 3.241 4 C -0.212 4.212 5 C -0.073 4.073 6 C -0.180 4.180 7 C 0.577 3.423 8 O -0.584 6.584 9 N -0.696 5.696 10 C 0.115 3.885 11 H 0.086 0.914 12 C -0.143 4.143 13 C -0.119 4.119 14 H 0.084 0.916 15 C 0.120 3.880 16 N -0.284 5.284 17 C -0.033 4.033 18 C -0.074 4.074 19 N -0.323 5.323 20 N -0.128 5.128 21 C -0.112 4.112 22 C -0.179 4.179 23 S 0.187 5.813 24 H 0.405 0.595 25 H 0.098 0.902 26 H -0.269 1.269 27 H -0.262 1.262 28 H 0.139 0.861 29 H 0.418 0.582 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.209 0.791 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 11.666 0.776 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.163 4.163 3 Si 0.660 3.340 4 C -0.328 4.328 5 C -0.103 4.103 6 C -0.198 4.198 7 C 0.364 3.636 8 O -0.465 6.465 9 N -0.347 5.347 10 C 0.010 3.990 11 H 0.104 0.896 12 C -0.182 4.182 13 C -0.139 4.139 14 H 0.102 0.898 15 C 0.001 3.999 16 N -0.078 5.078 17 C -0.185 4.185 18 C -0.232 4.232 19 N -0.188 5.188 20 N -0.107 5.107 21 C -0.150 4.150 22 C -0.317 4.317 23 S 0.453 5.547 24 H 0.257 0.743 25 H 0.116 0.884 26 H -0.195 1.195 27 H -0.187 1.187 28 H 0.157 0.843 29 H 0.257 0.743 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.135 0.865 34 H 0.252 0.748 35 H 0.226 0.774 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.748 12.040 1.853 13.074 hybrid contribution 0.321 -1.699 -0.370 1.769 sum 5.070 10.340 1.483 11.611 Atomic orbital electron populations 1.86470 1.17076 1.82560 1.51431 1.24345 0.85960 1.11176 0.94860 0.93547 0.79035 0.75134 0.86244 1.23799 1.09184 0.97212 1.02590 1.21077 0.98405 0.94902 0.95871 1.20158 1.07542 0.94231 0.97826 1.17870 0.77588 0.86834 0.81346 1.90801 1.45462 1.51086 1.59148 1.45631 1.56507 1.11991 1.20578 1.22464 0.98541 0.82124 0.95877 0.89569 1.23636 0.98819 0.99244 0.96466 1.22588 0.96516 0.99462 0.95319 0.89765 1.22582 0.95045 0.79782 1.02498 1.47836 1.08629 1.08416 1.42942 1.24409 0.87612 1.00446 1.06029 1.24239 0.98838 0.92825 1.07304 1.75087 1.01113 1.25752 1.16828 1.78223 1.22971 0.87814 1.21717 1.23311 1.01095 0.97221 0.93366 1.26162 1.03065 0.96879 1.05560 1.83195 1.50519 1.10191 1.10785 0.74276 0.88385 1.19501 1.18736 0.84329 0.74348 0.93612 0.86812 0.83310 0.86470 0.74754 0.77399 0.85277 0.89546 0.77097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.11 12.85 -148.98 -1.92 -2.02 16 2 C -0.05 0.05 2.93 71.24 0.21 0.26 16 3 Si 0.76 -3.42 30.92 68.60 2.12 -1.29 16 4 C -0.21 -0.83 5.69 24.51 0.14 -0.69 16 5 C -0.07 -0.54 9.95 22.67 0.23 -0.31 16 6 C -0.18 -0.76 5.98 -19.87 -0.12 -0.87 16 7 C 0.58 3.88 7.79 86.59 0.67 4.56 16 8 O -0.58 -9.86 16.41 -4.14 -0.07 -9.93 16 9 N -0.70 1.91 5.33 -443.50 -2.36 -0.46 16 10 C 0.11 -0.24 4.21 45.52 0.19 -0.05 16 11 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 12 C -0.14 0.55 7.45 31.18 0.23 0.78 16 13 C -0.12 0.69 3.84 -10.21 -0.04 0.65 16 14 H 0.08 0.07 7.91 -2.38 -0.02 0.05 16 15 C 0.12 -1.12 6.29 86.38 0.54 -0.57 16 16 N -0.28 0.01 3.44 -347.74 -1.20 -1.18 16 17 C -0.03 0.11 11.57 83.49 0.97 1.07 16 18 C -0.07 -0.23 12.05 83.73 1.01 0.78 16 19 N -0.32 -3.97 12.41 -58.25 -0.72 -4.69 16 20 N -0.13 -1.28 12.77 37.02 0.47 -0.80 16 21 C -0.11 1.07 7.39 31.12 0.23 1.30 16 22 C -0.18 0.51 10.38 67.30 0.70 1.21 16 23 S 0.19 -0.03 20.20 -56.49 -1.14 -1.18 16 24 H 0.41 -4.35 8.74 -74.06 -0.65 -5.00 16 25 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 26 H -0.27 -0.37 7.11 99.48 0.71 0.34 16 27 H -0.26 0.19 7.11 99.48 0.71 0.89 16 28 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.42 -4.59 7.21 -92.71 -0.67 -5.26 16 30 H 0.04 0.13 8.14 -2.39 -0.02 0.12 16 31 H 0.11 -1.03 7.90 -2.39 -0.02 -1.05 16 32 H 0.15 -2.60 7.78 -2.39 -0.02 -2.62 16 33 H 0.12 -1.33 8.14 -2.38 -0.02 -1.35 16 34 H 0.24 -3.26 8.06 -2.91 -0.02 -3.28 16 35 H 0.21 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.13 -2.14 8.07 -2.39 -0.02 -2.16 16 37 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.21 -2.58 7.01 -2.91 -0.02 -2.60 16 Total: 0.00 -35.37 342.76 -0.01 -35.38 By element: Atomic # 1 Polarization: -21.78 SS G_CDS: -0.16 Total: -21.94 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.96 Total: 8.12 kcal Atomic # 7 Polarization: -3.33 SS G_CDS: -3.81 Total: -7.14 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.98 Total: -11.95 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.12 Total: -1.29 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.14 Total: -1.18 kcal Total: -35.37 -0.01 -35.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.959 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds