Wall clock time and date at job start Tue Mar 9 2021 12:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37932 * 120.07548 * 2 1 4 4 C 1.38380 * 120.14959 * 179.71873 * 3 2 1 5 5 C 1.50699 * 119.86005 * 180.27783 * 4 3 2 6 6 C 1.38339 * 120.28546 * 0.51893 * 4 3 2 7 7 C 1.50701 * 119.92506 * 179.76347 * 6 4 3 8 8 O 1.42901 * 109.47049 * 284.72359 * 7 6 4 9 9 Si 1.86297 * 109.47391 * 164.72093 * 7 6 4 10 10 C 1.37980 * 120.14826 * 359.48272 * 6 4 3 11 11 C 1.39549 * 119.85179 * 0.25691 * 10 6 4 12 12 C 1.47845 * 120.14666 * 180.02562 * 11 10 6 13 13 O 1.21555 * 120.00261 * 173.75054 * 12 11 10 14 14 N 1.34781 * 119.99840 * 353.74251 * 12 11 10 15 15 C 1.46497 * 119.99973 * 180.02562 * 14 12 11 16 16 H 1.08988 * 112.85014 * 23.80519 * 15 14 12 17 17 C 1.53780 * 113.61152 * 155.00553 * 15 14 12 18 18 C 1.53781 * 87.08176 * 139.97724 * 17 15 14 19 19 H 1.09011 * 113.61384 * 89.19532 * 18 17 15 20 20 C 1.52997 * 113.61655 * 220.01681 * 18 17 15 21 21 N 1.46507 * 109.47251 * 185.00138 * 20 18 17 22 22 C 1.35306 * 125.86830 * 124.99802 * 21 20 18 23 23 C 1.35348 * 106.17503 * 180.02562 * 22 21 20 24 24 N 1.33772 * 106.49824 * 359.97438 * 23 22 21 25 25 N 1.28641 * 108.88018 * 359.73657 * 24 23 22 26 26 C 1.53781 * 87.08058 * 334.56484 * 18 17 15 27 27 H 1.08997 * 109.47486 * 263.43219 * 1 2 3 28 28 H 1.09003 * 109.47307 * 23.43548 * 1 2 3 29 29 H 1.09003 * 109.47079 * 143.42812 * 1 2 3 30 30 H 1.08007 * 119.92638 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47169 * 270.23870 * 5 4 3 32 32 H 1.09002 * 109.46679 * 30.23509 * 5 4 3 33 33 H 1.08997 * 109.47576 * 150.23752 * 5 4 3 34 34 H 1.09004 * 109.47303 * 44.71881 * 7 6 4 35 35 H 0.96701 * 113.99524 * 299.99490 * 8 7 6 36 36 H 1.48502 * 109.99827 * 58.68036 * 9 7 6 37 37 H 1.48502 * 110.00526 * 179.97438 * 9 7 6 38 38 H 1.08002 * 120.06963 * 180.27914 * 10 6 4 39 39 H 0.97005 * 119.99731 * 0.02562 * 14 12 11 40 40 H 1.09002 * 113.61152 * 254.52735 * 17 15 14 41 41 H 1.09000 * 113.61640 * 25.43015 * 17 15 14 42 42 H 1.08998 * 109.47134 * 304.99740 * 20 18 17 43 43 H 1.08993 * 109.47456 * 64.99978 * 20 18 17 44 44 H 1.08006 * 126.91688 * 359.97438 * 22 21 20 45 45 H 1.08002 * 126.75561 * 179.97438 * 23 22 21 46 46 H 1.08997 * 113.61259 * 270.88180 * 26 18 17 47 47 H 1.09003 * 113.61307 * 139.97893 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 0.0059 5 6 4.3306 2.5033 0.0122 6 6 4.2812 0.0018 0.0010 7 6 5.7882 0.0132 0.0020 8 8 6.2628 0.3651 -1.2991 9 14 6.4218 -1.6784 0.4577 10 6 3.6020 -1.1993 0.0009 11 6 2.2065 -1.2081 0.0004 12 6 1.4721 -2.4912 0.0010 13 8 0.2620 -2.4989 0.1152 14 7 2.1444 -3.6525 -0.1253 15 6 1.4167 -4.9240 -0.1253 16 1 0.3756 -4.8157 -0.4289 17 6 2.1567 -6.0572 -0.8553 18 6 1.6781 -6.9889 0.2706 19 1 0.7084 -7.4472 0.0756 20 6 2.7342 -8.0009 0.7193 21 7 2.1483 -8.9142 1.7037 22 6 2.1314 -10.2646 1.6206 23 6 1.4964 -10.7029 2.7327 24 7 1.1609 -9.6135 3.4328 25 7 1.5665 -8.5701 2.7990 26 6 1.6025 -5.7400 1.1648 27 1 -0.3634 -0.1175 1.0209 28 1 -0.3634 0.9429 -0.4087 29 1 -0.3633 -0.8253 -0.6123 30 1 1.6582 2.1290 -0.0004 31 1 4.5117 2.8232 -1.0139 32 1 3.7382 3.2584 0.5290 33 1 5.2831 2.3743 0.5260 34 1 6.1455 0.7429 0.7287 35 1 5.9826 -0.2422 -1.9975 36 1 5.9156 -2.6872 -0.5073 37 1 7.9068 -1.6806 0.4617 38 1 4.1492 -2.1304 0.0016 39 1 3.1102 -3.6464 -0.2161 40 1 1.7335 -6.2977 -1.8306 41 1 3.2384 -5.9256 -0.8830 42 1 3.0813 -8.5702 -0.1429 43 1 3.5753 -7.4732 1.1688 44 1 2.5412 -10.8709 0.8263 45 1 1.2994 -11.7300 3.0020 46 1 2.5326 -5.5218 1.6895 47 1 0.7318 -5.7245 1.8205 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14928172_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:26 Heat of formation + Delta-G solvation = 89.388811 kcal Electronic energy + Delta-G solvation = -29474.870154 eV Core-core repulsion = 25434.522520 eV Total energy + Delta-G solvation = -4040.347633 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.13586 -41.79686 -40.64081 -39.43299 -37.71041 -35.87553 -34.66588 -34.41836 -33.06452 -31.90963 -29.83315 -29.14312 -28.42748 -26.73874 -25.71026 -24.79415 -23.69024 -23.50059 -22.71105 -21.76745 -21.38338 -20.55875 -19.05747 -18.62298 -17.65390 -17.54236 -17.17383 -16.76796 -16.39268 -16.23867 -16.18384 -16.07998 -15.79404 -15.65658 -15.26814 -15.01058 -14.65062 -14.59829 -14.27562 -14.02506 -13.92379 -13.78128 -13.48234 -13.41924 -13.10194 -13.09777 -12.88541 -12.69893 -12.59747 -12.53826 -12.24525 -11.98799 -11.91835 -11.90012 -11.74628 -11.39316 -10.99953 -10.70033 -10.56248 -10.29383 -10.15719 -9.90633 -9.61601 -4.91581 -0.25789 0.16327 0.72207 1.28569 1.52608 1.53646 1.65872 1.71676 1.95372 2.08008 2.63252 3.30562 3.40467 3.42936 3.47205 3.57703 3.64150 3.65729 3.70010 3.78150 3.81154 4.03027 4.12674 4.17955 4.20679 4.28186 4.35799 4.37882 4.48556 4.51001 4.59686 4.66273 4.68919 4.70618 4.75128 4.78634 4.81104 4.85543 4.90198 4.97121 5.03447 5.05619 5.11368 5.16979 5.27341 5.30313 5.47842 5.50152 5.54724 5.75266 5.80253 6.44025 6.50951 7.13722 7.57994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.030 4.030 5 C -0.120 4.120 6 C -0.133 4.133 7 C -0.081 4.081 8 O -0.542 6.542 9 Si 0.749 3.251 10 C -0.071 4.071 11 C -0.159 4.159 12 C 0.556 3.444 13 O -0.565 6.565 14 N -0.704 5.704 15 C 0.115 3.885 16 H 0.094 0.906 17 C -0.113 4.113 18 C -0.114 4.114 19 H 0.087 0.913 20 C 0.118 3.882 21 N -0.286 5.286 22 C -0.035 4.035 23 C -0.074 4.074 24 N -0.325 5.325 25 N -0.119 5.119 26 C -0.141 4.141 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.386 0.614 36 H -0.255 1.255 37 H -0.301 1.301 38 H 0.149 0.851 39 H 0.412 0.588 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.235 0.765 45 H 0.208 0.792 46 H 0.100 0.900 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -2.334 -5.073 8.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.154 4.154 4 C -0.031 4.031 5 C -0.176 4.176 6 C -0.134 4.134 7 C -0.190 4.190 8 O -0.350 6.350 9 Si 0.653 3.347 10 C -0.090 4.090 11 C -0.162 4.162 12 C 0.345 3.655 13 O -0.445 6.445 14 N -0.356 5.356 15 C 0.010 3.990 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.134 4.134 19 H 0.106 0.894 20 C -0.001 4.001 21 N -0.080 5.080 22 C -0.187 4.187 23 C -0.232 4.232 24 N -0.190 5.190 25 N -0.099 5.099 26 C -0.180 4.180 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.235 0.765 36 H -0.181 1.181 37 H -0.229 1.229 38 H 0.166 0.834 39 H 0.250 0.750 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.167 0.833 43 H 0.134 0.866 44 H 0.252 0.748 45 H 0.225 0.775 46 H 0.119 0.881 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.094 -1.341 -4.034 7.430 hybrid contribution 0.155 -0.530 -1.608 1.700 sum 6.249 -1.870 -5.642 8.624 Atomic orbital electron populations 1.21014 0.90337 1.03107 1.03013 1.20216 0.96866 0.92116 0.93574 1.21180 0.93773 0.97921 1.02560 1.20226 0.93371 0.96021 0.93449 1.20939 1.00417 0.93017 1.03236 1.20101 0.96477 0.92603 1.04193 1.25199 0.91056 1.14444 0.88312 1.86599 1.76309 1.55104 1.17008 0.94224 0.77634 0.73696 0.89150 1.21308 0.92431 0.98497 0.96722 1.19672 0.93864 0.92737 1.09912 1.18514 0.86796 0.84598 0.75572 1.90743 1.15330 1.87600 1.50871 1.45805 1.11165 1.04945 1.73674 1.22519 0.97496 0.81339 0.97639 0.88814 1.23313 1.02600 0.91507 0.97731 1.22509 0.99167 0.93830 0.97848 0.89421 1.22596 0.95895 0.91265 0.90382 1.47869 1.36770 1.07484 1.15915 1.24414 1.06171 0.84214 1.03875 1.24219 1.03804 1.00610 0.94567 1.75102 1.20247 0.97206 1.26469 1.78274 1.13463 1.22069 0.96049 1.23527 1.02993 0.94813 0.96644 0.91290 0.90890 0.90502 0.83856 0.90447 0.90361 0.90361 0.85773 0.76506 1.18056 1.22912 0.83393 0.75014 0.88897 0.86126 0.83329 0.86574 0.74832 0.77500 0.88146 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 8.73 71.24 0.62 -0.01 16 2 C -0.03 -0.11 5.91 -19.61 -0.12 -0.23 16 3 C -0.14 -0.15 9.31 22.23 0.21 0.05 16 4 C -0.03 0.01 5.89 -19.81 -0.12 -0.11 16 5 C -0.12 0.34 9.54 71.24 0.68 1.02 16 6 C -0.13 0.28 5.26 -19.90 -0.10 0.18 16 7 C -0.08 0.33 2.04 71.24 0.15 0.47 16 8 O -0.54 0.79 12.81 -148.98 -1.91 -1.12 16 9 Si 0.75 -4.78 30.24 68.60 2.07 -2.71 16 10 C -0.07 0.18 8.13 22.53 0.18 0.37 16 11 C -0.16 -0.43 5.87 -20.09 -0.12 -0.55 16 12 C 0.56 2.72 7.70 86.79 0.67 3.38 16 13 O -0.56 -7.03 12.95 -3.89 -0.05 -7.08 16 14 N -0.70 1.72 5.30 -442.91 -2.35 -0.63 16 15 C 0.11 -0.31 4.24 45.52 0.19 -0.12 16 16 H 0.09 0.27 7.46 -2.39 -0.02 0.26 16 17 C -0.11 1.21 7.39 31.12 0.23 1.44 16 18 C -0.11 0.81 3.77 -10.27 -0.04 0.77 16 19 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 20 C 0.12 -1.19 6.29 86.38 0.54 -0.65 16 21 N -0.29 0.28 3.44 -347.73 -1.20 -0.91 16 22 C -0.04 0.14 11.57 83.49 0.97 1.11 16 23 C -0.07 -0.18 12.05 83.73 1.01 0.83 16 24 N -0.33 -3.70 12.41 -58.26 -0.72 -4.42 16 25 N -0.12 -1.04 12.94 37.02 0.48 -0.56 16 26 C -0.14 0.30 7.43 31.12 0.23 0.53 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.13 8.04 -2.39 -0.02 0.11 16 29 H 0.08 0.72 5.86 -2.39 -0.01 0.71 16 30 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 31 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.08 -0.36 8.08 -2.39 -0.02 -0.38 16 33 H 0.08 -0.29 6.21 -2.39 -0.01 -0.30 16 34 H 0.12 -0.63 6.47 -2.38 -0.02 -0.64 16 35 H 0.39 -2.74 8.70 -74.06 -0.64 -3.38 16 36 H -0.26 1.78 6.68 99.48 0.66 2.45 16 37 H -0.30 -0.59 7.11 99.48 0.71 0.12 16 38 H 0.15 -1.19 3.25 -2.91 -0.01 -1.20 16 39 H 0.41 -3.54 6.80 -92.70 -0.63 -4.17 16 40 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.12 -1.92 8.08 -2.39 -0.02 -1.94 16 42 H 0.15 -2.63 8.07 -2.39 -0.02 -2.65 16 43 H 0.12 -1.44 7.84 -2.39 -0.02 -1.45 16 44 H 0.24 -3.35 8.06 -2.91 -0.02 -3.38 16 45 H 0.21 -0.75 8.06 -2.91 -0.02 -0.77 16 46 H 0.10 -0.44 7.90 -2.39 -0.02 -0.46 16 47 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 Total: 0.00 -28.47 382.64 1.25 -27.21 By element: Atomic # 1 Polarization: -18.03 SS G_CDS: -0.26 Total: -18.28 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.18 Total: 8.50 kcal Atomic # 7 Polarization: -2.74 SS G_CDS: -3.79 Total: -6.53 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -1.96 Total: -8.20 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: 2.07 Total: -2.71 kcal Total: -28.47 1.25 -27.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14928172_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.599 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds