Wall clock time and date at job start Tue Mar 9 2021 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.53002 * 109.47505 * 239.99821 * 2 1 3 5 5 O 1.45204 * 109.46845 * 119.99771 * 2 1 3 6 6 C 1.34630 * 117.00128 * 60.00089 * 5 2 1 7 7 O 1.21510 * 119.99650 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00120 * 179.97438 * 6 5 2 9 9 C 1.46510 * 120.00077 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.85016 * 23.79948 * 9 8 6 11 11 C 1.53780 * 113.61392 * 154.99961 * 9 8 6 12 12 C 1.53782 * 87.08202 * 89.11340 * 11 9 8 13 13 H 1.08995 * 113.61369 * 270.79977 * 12 11 9 14 14 C 1.50699 * 113.61589 * 139.97893 * 12 11 9 15 15 O 1.21290 * 119.99882 * 1.52539 * 14 12 11 16 16 N 1.34771 * 120.00407 * 181.53027 * 14 12 11 17 17 N 1.40094 * 120.00697 * 180.02562 * 16 14 12 18 18 C 1.34771 * 120.00697 * 180.02562 * 17 16 14 19 19 O 1.21614 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.47381 * 120.00461 * 179.97438 * 18 17 16 21 21 C 1.36413 * 127.18902 * 0.02562 * 20 18 17 22 22 O 1.33648 * 108.39650 * 179.97438 * 21 20 18 23 23 C 1.34218 * 110.90864 * 0.02562 * 22 21 20 24 24 C 1.50701 * 125.43892 * 179.97438 * 23 22 21 25 25 O 1.42896 * 109.47417 * 245.02985 * 24 23 22 26 26 Si 1.86301 * 109.47149 * 5.03001 * 24 23 22 27 27 C 1.34179 * 109.12332 * 0.26502 * 23 22 21 28 28 C 1.53788 * 87.17376 * 25.38685 * 12 11 9 29 29 H 1.09002 * 109.47251 * 300.00212 * 1 2 3 30 30 H 1.09001 * 109.46510 * 60.00303 * 1 2 3 31 31 H 1.08992 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47328 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47496 * 300.00001 * 3 2 1 34 34 H 1.09002 * 109.47192 * 59.99751 * 3 2 1 35 35 H 1.09000 * 109.46499 * 300.00271 * 4 2 1 36 36 H 1.09004 * 109.46964 * 60.00027 * 4 2 1 37 37 H 1.09001 * 109.47167 * 180.02562 * 4 2 1 38 38 H 0.96997 * 120.00217 * 359.97438 * 8 6 5 39 39 H 1.08999 * 113.61429 * 334.56296 * 11 9 8 40 40 H 1.08998 * 113.68435 * 203.66974 * 11 9 8 41 41 H 0.97005 * 119.99450 * 0.02562 * 16 14 12 42 42 H 0.97011 * 119.99676 * 359.97438 * 17 16 14 43 43 H 1.07997 * 125.80578 * 359.95321 * 21 20 18 44 44 H 1.09002 * 109.47060 * 125.03012 * 24 23 22 45 45 H 0.96708 * 114.00101 * 59.99427 * 25 24 23 46 46 H 1.48494 * 109.99914 * 58.67711 * 26 24 23 47 47 H 1.48493 * 110.00101 * 179.97438 * 26 24 23 48 48 H 1.08001 * 127.01860 * 179.73128 * 27 23 22 49 49 H 1.09002 * 113.60987 * 89.15692 * 28 12 11 50 50 H 1.08997 * 113.61506 * 220.06079 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0671 2.5828 10 1 1.4223 -4.5505 1.6390 11 6 2.6484 -4.8814 3.4510 12 6 1.8077 -4.4464 4.6630 13 1 2.1375 -3.5082 5.1090 14 6 1.6056 -5.5391 5.6809 15 8 2.1124 -6.6278 5.5107 16 7 0.8616 -5.3067 6.7804 17 7 0.6741 -6.3223 7.7270 18 6 -0.0703 -6.0901 8.8262 19 8 -0.5790 -4.9987 8.9966 20 6 -0.2680 -7.1587 9.8217 21 6 0.2308 -8.4277 9.7793 22 8 -0.1799 -9.0790 10.8717 23 6 -0.9388 -8.2867 11.6448 24 6 -1.5720 -8.6885 12.9520 25 8 -2.9945 -8.6680 12.8185 26 14 -1.0160 -10.4069 13.4091 27 6 -1.0490 -7.0817 11.0649 28 6 0.6276 -4.2847 3.6902 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 2.6281 -2.2369 3.0826 39 1 3.6634 -4.4842 3.4585 40 1 2.6147 -5.9537 3.2586 41 1 0.4559 -4.4361 6.9163 42 1 1.0795 -7.1931 7.5909 43 1 0.8517 -8.8367 8.9960 44 1 -1.2701 -7.9895 13.7320 45 1 -3.3347 -9.2677 12.1403 46 1 0.4642 -10.4491 13.5198 47 1 -1.6330 -10.8147 14.6967 48 1 -1.5972 -6.2288 11.4369 49 1 0.0395 -5.1935 3.5625 50 1 0.0137 -3.4066 3.8907 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14937822_13456056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:02 Heat of formation + Delta-G solvation = -96.479352 kcal Electronic energy + Delta-G solvation = -34209.545704 eV Core-core repulsion = 29208.287647 eV Total energy + Delta-G solvation = -5001.258058 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.86716 -42.13852 -41.53600 -40.56822 -39.27717 -38.10990 -37.68528 -36.46304 -35.26656 -34.31976 -33.97530 -32.78646 -31.47037 -28.34029 -28.29872 -27.69667 -26.99311 -26.73257 -25.09349 -23.87330 -22.74665 -22.37162 -21.63612 -21.13015 -20.36636 -19.62767 -19.25091 -18.96142 -18.33461 -17.84209 -17.55875 -17.55261 -17.16050 -17.04258 -16.85241 -16.50799 -16.40589 -15.99112 -15.91604 -15.62291 -15.44652 -15.32104 -15.04114 -14.85179 -14.40385 -14.25816 -14.08888 -13.98600 -13.76082 -13.65838 -13.45472 -13.12808 -13.11121 -12.93840 -12.86925 -12.84073 -12.53217 -12.44637 -12.27503 -12.19577 -11.97397 -11.85458 -11.53769 -11.32045 -11.12261 -11.03885 -11.00026 -10.73596 -10.27365 -9.97989 -9.56026 -5.11575 0.03884 0.56575 0.74141 1.05667 1.10167 1.27205 1.37806 1.68921 1.82475 1.86305 2.12050 2.73428 3.03640 3.05748 3.12651 3.17492 3.25147 3.37780 3.51279 3.56890 3.75696 3.76230 3.81999 3.87614 3.95848 4.14821 4.24837 4.32910 4.44552 4.46240 4.51160 4.55681 4.58705 4.62182 4.63631 4.70005 4.74533 4.77297 4.83699 4.90733 4.92074 5.07873 5.08122 5.27571 5.35528 5.41065 5.44533 5.50672 5.57420 5.71037 6.28511 6.31397 6.34290 6.66253 7.13995 7.37698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.653 3.347 7 O -0.562 6.562 8 N -0.696 5.696 9 C 0.139 3.861 10 H 0.117 0.883 11 C -0.117 4.117 12 C -0.130 4.130 13 H 0.122 0.878 14 C 0.527 3.473 15 O -0.535 6.535 16 N -0.518 5.518 17 N -0.523 5.523 18 C 0.592 3.408 19 O -0.530 6.530 20 C -0.235 4.235 21 C 0.041 3.959 22 O -0.162 6.162 23 C -0.055 4.055 24 C -0.029 4.029 25 O -0.529 6.529 26 Si 0.707 3.293 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.434 0.566 42 H 0.430 0.570 43 H 0.217 0.783 44 H 0.135 0.865 45 H 0.384 0.616 46 H -0.253 1.253 47 H -0.246 1.246 48 H 0.165 0.835 49 H 0.102 0.898 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -1.265 -0.715 1.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.451 6.451 8 N -0.355 5.355 9 C 0.034 3.966 10 H 0.135 0.865 11 C -0.156 4.156 12 C -0.153 4.153 13 H 0.140 0.860 14 C 0.313 3.687 15 O -0.410 6.410 16 N -0.267 5.267 17 N -0.272 5.272 18 C 0.380 3.620 19 O -0.405 6.405 20 C -0.241 4.241 21 C -0.030 4.030 22 O -0.057 6.057 23 C -0.104 4.104 24 C -0.139 4.139 25 O -0.335 6.335 26 Si 0.606 3.394 27 C -0.138 4.138 28 C -0.176 4.176 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.277 0.723 42 H 0.272 0.728 43 H 0.233 0.767 44 H 0.152 0.848 45 H 0.233 0.767 46 H -0.177 1.177 47 H -0.171 1.171 48 H 0.182 0.818 49 H 0.121 0.879 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.410 -1.794 -0.034 2.282 hybrid contribution 0.360 1.184 0.199 1.254 sum 1.770 -0.610 0.164 1.879 Atomic orbital electron populations 1.22525 0.93796 1.05071 1.02762 1.22133 0.94464 0.91546 0.81788 1.21884 1.02356 0.92329 1.03373 1.22530 1.01643 1.03460 0.96546 1.86306 1.71464 1.23309 1.46807 1.18060 0.78628 0.80684 0.81948 1.90929 1.40722 1.70350 1.43091 1.44365 1.55502 1.11710 1.23928 1.21792 0.95284 0.79657 0.99840 0.86487 1.23301 0.98518 1.02441 0.91332 1.22875 1.00989 0.97965 0.93478 0.86045 1.20830 0.77340 0.90228 0.80276 1.90747 1.48892 1.25152 1.76170 1.45022 1.53972 1.10789 1.16905 1.44663 1.54133 1.11068 1.17312 1.17287 0.77838 0.87560 0.79291 1.90849 1.48967 1.24385 1.76315 1.21107 1.08927 0.94660 0.99359 1.24571 0.98318 0.90859 0.89265 1.83713 1.53105 1.40817 1.28096 1.22785 1.00054 0.90648 0.96882 1.24485 0.84014 1.13831 0.91604 1.86585 1.17068 1.68280 1.61562 0.94233 0.81242 0.78709 0.85213 1.22497 1.00260 0.98204 0.92859 1.23514 0.95941 1.04081 0.94073 0.92101 0.90894 0.89403 0.91372 0.89895 0.91383 0.89401 0.90891 0.92079 0.75778 0.89514 0.86550 0.72333 0.72797 0.76674 0.84807 0.76747 1.17719 1.17055 0.81774 0.87929 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.16 8.37 37.16 0.31 0.15 16 2 C 0.14 0.11 1.13 -90.62 -0.10 0.01 16 3 C -0.14 0.15 8.85 37.16 0.33 0.48 16 4 C -0.18 -0.17 8.37 37.16 0.31 0.14 16 5 O -0.36 -0.60 9.94 -40.30 -0.40 -1.00 16 6 C 0.65 1.20 8.06 54.05 0.44 1.63 16 7 O -0.56 -2.40 11.48 -19.28 -0.22 -2.62 16 8 N -0.70 0.98 5.26 -57.84 -0.30 0.67 16 9 C 0.14 -0.28 4.33 -67.02 -0.29 -0.57 16 10 H 0.12 -0.07 7.46 -51.93 -0.39 -0.45 16 11 C -0.12 0.33 7.15 -25.92 -0.19 0.15 16 12 C -0.13 0.42 4.02 -90.96 -0.37 0.05 16 13 H 0.12 -0.63 8.14 -51.93 -0.42 -1.05 16 14 C 0.53 -0.29 7.47 -10.99 -0.08 -0.38 16 15 O -0.53 -1.28 15.75 5.55 0.09 -1.20 16 16 N -0.52 0.32 6.26 31.22 0.20 0.52 16 17 N -0.52 0.12 6.25 30.42 0.19 0.31 16 18 C 0.59 1.01 7.93 -12.54 -0.10 0.91 16 19 O -0.53 -2.71 16.82 5.26 0.09 -2.62 16 20 C -0.23 -0.07 6.31 -103.28 -0.65 -0.73 16 21 C 0.04 -0.10 11.61 30.07 0.35 0.25 16 22 O -0.16 0.21 8.90 7.65 0.07 0.27 16 23 C -0.06 0.03 6.18 -35.74 -0.22 -0.19 16 24 C -0.03 0.04 2.97 36.01 0.11 0.15 16 25 O -0.53 0.56 12.88 -35.23 -0.45 0.10 16 26 Si 0.71 -1.44 32.09 -169.99 -5.46 -6.90 16 27 C -0.12 -0.11 10.90 -37.45 -0.41 -0.52 16 28 C -0.14 0.39 7.44 -25.82 -0.19 0.20 16 29 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.09 0.26 5.88 -51.93 -0.31 -0.05 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.09 0.26 5.88 -51.93 -0.31 -0.05 16 36 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.41 -1.43 8.81 -40.82 -0.36 -1.79 16 39 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 40 H 0.12 -0.21 7.45 -51.93 -0.39 -0.59 16 41 H 0.43 -0.61 8.00 -182.60 -1.46 -2.07 16 42 H 0.43 -0.83 6.97 -182.59 -1.27 -2.11 16 43 H 0.22 -1.40 7.47 -52.49 -0.39 -1.79 16 44 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 45 H 0.38 -1.90 8.70 45.56 0.40 -1.50 16 46 H -0.25 -0.21 7.11 56.52 0.40 0.20 16 47 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 48 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 49 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 50 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 LS Contribution 423.10 15.07 6.38 6.38 Total: 0.00 -11.84 423.10 -9.74 -21.59 By element: Atomic # 1 Polarization: -8.09 SS G_CDS: -9.16 Total: -17.24 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.76 Total: 1.74 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: 0.08 Total: 1.50 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.83 Total: -7.06 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.46 Total: -6.90 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -11.84 -9.74 -21.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14937822_13456056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.894 kcal (2) G-P(sol) polarization free energy of solvation -11.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds