Wall clock time and date at job start Tue Mar 9 2021 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.53002 * 109.47505 * 239.99821 * 2 1 3 5 5 O 1.45204 * 109.46845 * 119.99771 * 2 1 3 6 6 C 1.34630 * 117.00128 * 60.00089 * 5 2 1 7 7 O 1.21510 * 119.99650 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00120 * 179.97438 * 6 5 2 9 9 C 1.46510 * 120.00077 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.85016 * 23.79948 * 9 8 6 11 11 C 1.53780 * 113.61392 * 154.99961 * 9 8 6 12 12 C 1.53782 * 87.08202 * 89.11340 * 11 9 8 13 13 H 1.08995 * 113.61369 * 270.79977 * 12 11 9 14 14 C 1.50699 * 113.61589 * 139.97893 * 12 11 9 15 15 O 1.21290 * 119.99882 * 1.52539 * 14 12 11 16 16 N 1.34771 * 120.00407 * 181.53027 * 14 12 11 17 17 N 1.40094 * 120.00697 * 180.02562 * 16 14 12 18 18 C 1.34771 * 120.00697 * 180.02562 * 17 16 14 19 19 O 1.21614 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.47381 * 120.00461 * 179.97438 * 18 17 16 21 21 C 1.36413 * 127.18902 * 0.02562 * 20 18 17 22 22 O 1.33648 * 108.39650 * 179.97438 * 21 20 18 23 23 C 1.34218 * 110.90864 * 0.02562 * 22 21 20 24 24 C 1.50701 * 125.43892 * 179.97438 * 23 22 21 25 25 O 1.42896 * 109.47417 * 245.02985 * 24 23 22 26 26 Si 1.86301 * 109.47149 * 5.03001 * 24 23 22 27 27 C 1.34179 * 109.12332 * 0.26502 * 23 22 21 28 28 C 1.53788 * 87.17376 * 25.38685 * 12 11 9 29 29 H 1.09002 * 109.47251 * 300.00212 * 1 2 3 30 30 H 1.09001 * 109.46510 * 60.00303 * 1 2 3 31 31 H 1.08992 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47328 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47496 * 300.00001 * 3 2 1 34 34 H 1.09002 * 109.47192 * 59.99751 * 3 2 1 35 35 H 1.09000 * 109.46499 * 300.00271 * 4 2 1 36 36 H 1.09004 * 109.46964 * 60.00027 * 4 2 1 37 37 H 1.09001 * 109.47167 * 180.02562 * 4 2 1 38 38 H 0.96997 * 120.00217 * 359.97438 * 8 6 5 39 39 H 1.08999 * 113.61429 * 334.56296 * 11 9 8 40 40 H 1.08998 * 113.68435 * 203.66974 * 11 9 8 41 41 H 0.97005 * 119.99450 * 0.02562 * 16 14 12 42 42 H 0.97011 * 119.99676 * 359.97438 * 17 16 14 43 43 H 1.07997 * 125.80578 * 359.95321 * 21 20 18 44 44 H 1.09002 * 109.47060 * 125.03012 * 24 23 22 45 45 H 0.96708 * 114.00101 * 59.99427 * 25 24 23 46 46 H 1.48494 * 109.99914 * 58.67711 * 26 24 23 47 47 H 1.48493 * 110.00101 * 179.97438 * 26 24 23 48 48 H 1.08001 * 127.01860 * 179.73128 * 27 23 22 49 49 H 1.09002 * 113.60987 * 89.15692 * 28 12 11 50 50 H 1.08997 * 113.61506 * 220.06079 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5036 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0671 2.5828 10 1 1.4223 -4.5505 1.6390 11 6 2.6484 -4.8814 3.4510 12 6 1.8077 -4.4464 4.6630 13 1 2.1375 -3.5082 5.1090 14 6 1.6056 -5.5391 5.6809 15 8 2.1124 -6.6278 5.5107 16 7 0.8616 -5.3067 6.7804 17 7 0.6741 -6.3223 7.7270 18 6 -0.0703 -6.0901 8.8262 19 8 -0.5790 -4.9987 8.9966 20 6 -0.2680 -7.1587 9.8217 21 6 0.2308 -8.4277 9.7793 22 8 -0.1799 -9.0790 10.8717 23 6 -0.9388 -8.2867 11.6448 24 6 -1.5720 -8.6885 12.9520 25 8 -2.9945 -8.6680 12.8185 26 14 -1.0160 -10.4069 13.4091 27 6 -1.0490 -7.0817 11.0649 28 6 0.6276 -4.2847 3.6902 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 2.6281 -2.2369 3.0826 39 1 3.6634 -4.4842 3.4585 40 1 2.6147 -5.9537 3.2586 41 1 0.4559 -4.4361 6.9163 42 1 1.0795 -7.1931 7.5909 43 1 0.8517 -8.8367 8.9960 44 1 -1.2701 -7.9895 13.7320 45 1 -3.3347 -9.2677 12.1403 46 1 0.4642 -10.4491 13.5198 47 1 -1.6330 -10.8147 14.6967 48 1 -1.5972 -6.2288 11.4369 49 1 0.0395 -5.1935 3.5625 50 1 0.0137 -3.4066 3.8907 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14937822_13456056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:00 Heat of formation + Delta-G solvation = -102.060043 kcal Electronic energy + Delta-G solvation = -34209.787701 eV Core-core repulsion = 29208.287647 eV Total energy + Delta-G solvation = -5001.500055 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.171 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.80067 -42.12854 -41.58959 -40.60716 -39.29721 -38.00328 -37.75733 -36.53841 -35.33224 -34.31865 -33.95648 -32.77158 -31.41394 -28.36607 -28.30304 -27.61643 -26.80692 -26.63513 -25.08143 -23.88771 -22.74631 -22.33563 -21.60450 -21.16078 -20.25700 -19.58566 -19.27388 -18.96322 -18.30546 -17.75116 -17.58163 -17.45965 -17.22311 -17.05833 -16.79531 -16.48536 -16.38148 -15.96566 -15.87243 -15.60721 -15.49790 -15.35775 -15.07857 -14.79879 -14.41863 -14.26393 -14.06637 -13.89147 -13.68762 -13.49479 -13.37997 -13.11532 -13.01714 -12.91604 -12.86635 -12.82578 -12.60687 -12.50726 -12.32281 -12.23099 -11.84460 -11.72773 -11.64204 -11.39673 -11.13676 -11.11494 -11.05158 -10.64181 -10.23479 -9.92507 -9.57332 -4.97663 0.11216 0.60088 0.73941 1.10489 1.17827 1.30985 1.48869 1.72178 1.79071 1.94850 2.07530 2.77430 3.08723 3.19199 3.28298 3.33923 3.36302 3.54686 3.66766 3.69906 3.74120 3.79986 3.89126 3.94410 4.08086 4.23679 4.34822 4.43826 4.45458 4.55021 4.61442 4.64527 4.69448 4.75878 4.76842 4.80433 4.81878 4.87657 4.87892 4.92679 5.01557 5.06095 5.14514 5.27382 5.30194 5.38874 5.42891 5.55600 5.60421 5.78206 6.31047 6.37200 6.62961 6.66188 7.13523 7.32848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.681 5.681 9 C 0.137 3.863 10 H 0.100 0.900 11 C -0.110 4.110 12 C -0.120 4.120 13 H 0.149 0.851 14 C 0.529 3.471 15 O -0.564 6.564 16 N -0.518 5.518 17 N -0.516 5.516 18 C 0.594 3.406 19 O -0.573 6.573 20 C -0.263 4.263 21 C 0.071 3.929 22 O -0.160 6.160 23 C -0.051 4.051 24 C -0.034 4.034 25 O -0.544 6.544 26 Si 0.794 3.206 27 C -0.142 4.142 28 C -0.131 4.131 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.419 0.581 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.438 0.562 42 H 0.438 0.562 43 H 0.259 0.741 44 H 0.133 0.867 45 H 0.401 0.599 46 H -0.289 1.289 47 H -0.285 1.285 48 H 0.151 0.849 49 H 0.099 0.901 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -1.375 -0.983 2.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.482 6.482 8 N -0.341 5.341 9 C 0.032 3.968 10 H 0.118 0.882 11 C -0.148 4.148 12 C -0.142 4.142 13 H 0.166 0.834 14 C 0.317 3.683 15 O -0.441 6.441 16 N -0.266 5.266 17 N -0.264 5.264 18 C 0.383 3.617 19 O -0.452 6.452 20 C -0.269 4.269 21 C 0.000 4.000 22 O -0.055 6.055 23 C -0.099 4.099 24 C -0.144 4.144 25 O -0.353 6.353 26 Si 0.698 3.302 27 C -0.163 4.163 28 C -0.170 4.170 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.281 0.719 42 H 0.282 0.718 43 H 0.275 0.725 44 H 0.150 0.850 45 H 0.251 0.749 46 H -0.216 1.216 47 H -0.211 1.211 48 H 0.169 0.831 49 H 0.117 0.883 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.247 -1.909 -0.311 2.965 hybrid contribution 0.111 1.188 0.280 1.226 sum 2.359 -0.721 -0.031 2.467 Atomic orbital electron populations 1.22477 0.94035 1.03750 1.03506 1.22336 0.94430 0.92516 0.81483 1.21896 1.02484 0.90939 1.04229 1.22485 1.01681 1.02294 0.97363 1.86310 1.71495 1.23213 1.47210 1.18312 0.78564 0.80793 0.82330 1.90919 1.42125 1.70878 1.44319 1.44308 1.54931 1.11649 1.23225 1.21772 0.96234 0.79323 0.99432 0.88190 1.23225 0.98999 1.01687 0.90932 1.22943 1.00548 0.98138 0.92555 0.83387 1.21248 0.76519 0.90284 0.80223 1.90735 1.50117 1.26448 1.76801 1.45168 1.53781 1.10927 1.16759 1.44624 1.53358 1.11545 1.16858 1.17468 0.77331 0.87250 0.79607 1.90819 1.50931 1.26084 1.77345 1.21072 1.10752 0.95668 0.99405 1.25315 0.96296 0.89558 0.88812 1.83740 1.52833 1.40646 1.28311 1.22823 0.99863 0.90222 0.97018 1.24651 0.83997 1.14499 0.91224 1.86550 1.17151 1.69151 1.62431 0.93199 0.77507 0.76675 0.82821 1.22529 1.01244 0.98565 0.93912 1.23460 0.95908 1.04082 0.93580 0.91878 0.89608 0.91677 0.91148 0.88430 0.91145 0.91691 0.89575 0.91890 0.74312 0.88324 0.87534 0.71893 0.71751 0.72529 0.84977 0.74856 1.21551 1.21148 0.83129 0.88253 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 2 C 0.13 0.23 1.13 -10.79 -0.01 0.22 16 3 C -0.14 0.41 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.42 8.37 71.98 0.60 0.19 16 5 O -0.37 -1.31 9.94 -55.39 -0.55 -1.86 16 6 C 0.65 2.81 8.06 129.79 1.05 3.86 16 7 O -0.59 -5.98 11.48 19.81 0.23 -5.76 16 8 N -0.68 1.96 5.26 -567.33 -2.99 -1.03 16 9 C 0.14 -0.51 4.33 45.58 0.20 -0.32 16 10 H 0.10 0.03 7.46 -2.39 -0.02 0.01 16 11 C -0.11 0.67 7.15 31.12 0.22 0.89 16 12 C -0.12 0.87 4.02 -11.01 -0.04 0.82 16 13 H 0.15 -1.83 8.14 -2.39 -0.02 -1.85 16 14 C 0.53 -0.84 7.47 87.66 0.65 -0.19 16 15 O -0.56 -2.50 15.75 -3.06 -0.05 -2.55 16 16 N -0.52 0.74 6.26 -173.53 -1.09 -0.35 16 17 N -0.52 0.33 6.25 -175.92 -1.10 -0.77 16 18 C 0.59 2.40 7.93 86.65 0.69 3.09 16 19 O -0.57 -6.75 16.82 -4.08 -0.07 -6.82 16 20 C -0.26 -0.22 6.31 -18.99 -0.12 -0.34 16 21 C 0.07 -0.44 11.61 67.39 0.78 0.34 16 22 O -0.16 0.59 8.90 4.47 0.04 0.63 16 23 C -0.05 0.05 6.18 24.76 0.15 0.20 16 24 C -0.03 0.09 2.97 71.24 0.21 0.30 16 25 O -0.54 1.07 12.88 -148.98 -1.92 -0.85 16 26 Si 0.79 -3.31 32.09 68.60 2.20 -1.11 16 27 C -0.14 -0.42 10.90 23.65 0.26 -0.16 16 28 C -0.13 0.75 7.44 31.18 0.23 0.99 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 32 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 36 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.42 -3.33 8.81 -92.71 -0.82 -4.15 16 39 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.11 -0.36 7.45 -2.39 -0.02 -0.37 16 41 H 0.44 -1.20 8.00 -213.32 -1.71 -2.91 16 42 H 0.44 -2.08 6.97 -213.31 -1.49 -3.57 16 43 H 0.26 -4.10 7.47 -2.91 -0.02 -4.12 16 44 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.40 -4.09 8.70 -74.05 -0.64 -4.73 16 46 H -0.29 -0.53 7.11 99.48 0.71 0.17 16 47 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 48 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 49 H 0.10 -0.47 8.09 -2.39 -0.02 -0.49 16 50 H 0.09 -0.54 8.14 -2.39 -0.02 -0.55 16 Total: 0.00 -29.68 423.10 -2.76 -32.44 By element: Atomic # 1 Polarization: -19.53 SS G_CDS: -3.58 Total: -23.12 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.11 Total: 11.14 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -5.17 Total: -2.14 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -2.32 Total: -17.20 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.20 Total: -1.11 kcal Total: -29.68 -2.76 -32.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14937822_13456056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.623 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds