Wall clock time and date at job start Tue Mar 9 2021 12:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46878 * 2 1 4 4 C 1.50693 * 109.47423 * 120.00014 * 2 1 3 5 5 C 1.36454 * 120.29695 * 120.01990 * 4 2 1 6 6 C 1.40088 * 119.25730 * 179.73378 * 5 4 2 7 7 C 1.40852 * 132.86605 * 179.61390 * 6 5 4 8 8 C 1.46564 * 126.57842 * 0.67314 * 7 6 5 9 9 O 1.21723 * 120.00101 * 359.71246 * 8 7 6 10 10 N 1.34777 * 119.99718 * 179.70922 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72448 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 14 14 C 1.53004 * 109.47137 * 65.00035 * 12 11 10 15 15 C 1.52996 * 109.47242 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46976 * 299.99985 * 15 14 12 17 17 H 1.08997 * 109.46851 * 299.99936 * 16 15 14 18 18 C 1.52996 * 109.46976 * 179.97438 * 16 15 14 19 19 O 1.42896 * 109.47503 * 64.99798 * 18 16 15 20 20 C 1.53004 * 109.47123 * 59.99942 * 16 15 14 21 21 C 1.52998 * 109.47023 * 185.00121 * 12 11 10 22 22 C 1.40562 * 106.84092 * 180.40919 * 7 6 5 23 23 N 1.30742 * 108.74235 * 0.24403 * 22 7 6 24 24 N 1.36589 * 120.22634 * 0.49973 * 6 5 4 25 25 C 1.36238 * 120.07803 * 359.47847 * 24 6 5 26 26 C 1.35188 * 120.71171 * 0.29549 * 25 24 6 27 27 H 0.96690 * 113.99964 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47244 * 240.00340 * 2 1 3 29 29 H 1.48497 * 110.00030 * 178.68035 * 3 2 1 30 30 H 1.48506 * 110.00273 * 300.00170 * 3 2 1 31 31 H 1.07995 * 120.36866 * 0.02562 * 5 4 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 35 35 H 1.09000 * 109.46939 * 300.00085 * 14 12 11 36 36 H 1.09003 * 109.46857 * 59.99834 * 14 12 11 37 37 H 1.08991 * 109.47151 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47278 * 59.99660 * 15 14 12 39 39 H 1.09002 * 109.47209 * 185.00347 * 18 16 15 40 40 H 1.09000 * 109.47272 * 304.99602 * 18 16 15 41 41 H 0.96694 * 114.00334 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46939 * 180.02562 * 20 16 15 43 43 H 1.09004 * 109.46838 * 59.99735 * 20 16 15 44 44 H 1.09005 * 109.47209 * 299.99293 * 21 12 11 45 45 H 1.08991 * 109.47437 * 59.99960 * 21 12 11 46 46 H 1.07997 * 125.62855 * 180.21485 * 22 7 6 47 47 H 1.08001 * 119.64255 * 180.27204 * 25 24 6 48 48 H 1.07995 * 119.83909 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.7166 -1.8201 1.1122 6 6 3.1762 -2.4601 2.2705 7 6 3.9761 -3.6000 2.4821 8 6 4.5769 -4.4493 1.4497 9 8 4.3974 -4.1960 0.2728 10 7 5.3283 -5.5107 1.8036 11 6 5.9239 -6.3631 0.7717 12 6 6.7156 -7.4912 1.4364 13 1 7.4466 -7.0657 2.1239 14 6 5.7575 -8.4002 2.2089 15 6 6.5492 -9.5278 2.8741 16 6 7.2733 -10.3441 1.8015 17 1 6.5426 -10.7698 1.1139 18 6 8.0656 -11.4713 2.4667 19 8 7.1614 -12.3850 3.0910 20 6 8.2314 -9.4351 1.0290 21 6 7.4392 -8.3072 0.3634 22 6 4.0926 -3.7632 3.8733 23 7 3.4195 -2.8116 4.4657 24 7 2.8319 -1.9822 3.5028 25 6 2.0477 -0.8733 3.6105 26 6 1.5965 -0.2369 2.5064 27 1 -0.3933 0.4416 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5614 2.4680 -1.2085 31 1 2.9846 -2.1979 0.1366 32 1 5.4712 -5.7128 2.7415 33 1 5.1347 -6.7893 0.1523 34 1 6.5923 -5.7678 0.1498 35 1 5.2420 -7.8187 2.9733 36 1 5.0265 -8.8255 1.5213 37 1 5.8668 -10.1750 3.4248 38 1 7.2800 -9.1021 3.5617 39 1 8.6513 -11.9976 1.7130 40 1 8.7341 -11.0512 3.2182 41 1 7.5953 -13.1272 3.5334 42 1 8.7469 -10.0165 0.2646 43 1 8.9622 -9.0093 1.7167 44 1 6.7082 -8.7328 -0.3241 45 1 8.1217 -7.6598 -0.1869 46 1 4.6462 -4.5457 4.3708 47 1 1.7834 -0.4989 4.5884 48 1 0.9754 0.6407 2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:59 Heat of formation + Delta-G solvation = -36.703914 kcal Electronic energy + Delta-G solvation = -29791.466739 eV Core-core repulsion = 25620.621174 eV Total energy + Delta-G solvation = -4170.845565 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.31963 -40.77871 -39.84206 -39.28644 -37.60788 -37.21616 -35.75639 -34.24167 -32.84419 -32.10007 -31.70483 -30.42580 -28.22722 -27.12039 -25.25142 -24.57815 -23.88469 -23.34548 -22.92378 -21.67999 -21.27366 -20.69361 -19.13064 -18.51144 -18.21233 -17.84982 -17.57220 -17.04574 -16.88096 -16.54064 -16.42847 -15.99561 -15.85472 -15.79458 -15.39865 -15.11107 -15.05673 -14.80219 -14.56222 -14.46384 -14.24538 -14.02464 -13.92791 -13.51689 -13.44146 -13.14846 -13.09269 -12.82103 -12.52472 -12.39933 -12.23757 -12.05012 -12.00783 -11.90351 -11.58346 -11.40929 -11.20355 -11.06955 -10.97222 -10.79715 -10.77536 -10.27099 -10.14878 -8.81563 -5.08068 -0.58302 -0.11918 0.98675 1.04184 1.19538 1.67319 1.95374 2.06817 2.22477 2.46094 3.07270 3.22509 3.30618 3.45453 3.59407 3.63602 3.73223 3.73918 3.76438 3.86707 3.95395 4.09817 4.16421 4.20333 4.30136 4.36311 4.38218 4.45029 4.49639 4.51134 4.58679 4.61228 4.66422 4.70109 4.75077 4.77043 4.85885 4.96400 5.08769 5.08996 5.15115 5.15561 5.22308 5.24256 5.27095 5.31618 5.42840 5.46701 5.56683 5.66628 6.27084 6.56275 6.76313 6.88635 7.25068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.078 4.078 3 Si 0.818 3.182 4 C -0.053 4.053 5 C -0.136 4.136 6 C 0.150 3.850 7 C -0.348 4.348 8 C 0.595 3.405 9 O -0.598 6.598 10 N -0.713 5.713 11 C 0.129 3.871 12 C -0.086 4.086 13 H 0.092 0.908 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.091 4.091 17 H 0.060 0.940 18 C 0.076 3.924 19 O -0.597 6.597 20 C -0.106 4.106 21 C -0.111 4.111 22 C 0.131 3.869 23 N -0.337 5.337 24 N -0.273 5.273 25 C 0.115 3.885 26 C -0.146 4.146 27 H 0.401 0.599 28 H 0.104 0.896 29 H -0.303 1.303 30 H -0.289 1.289 31 H 0.136 0.864 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.395 0.605 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.232 0.768 47 H 0.215 0.785 48 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 2.977 6.242 6.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.186 4.186 3 Si 0.721 3.279 4 C -0.059 4.059 5 C -0.156 4.156 6 C 0.029 3.971 7 C -0.363 4.363 8 C 0.385 3.615 9 O -0.481 6.481 10 N -0.364 5.364 11 C 0.006 3.994 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.109 4.109 17 H 0.078 0.922 18 C -0.002 4.002 19 O -0.405 6.405 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.050 4.050 23 N -0.157 5.157 24 N -0.036 5.036 25 C -0.010 4.010 26 C -0.166 4.166 27 H 0.252 0.748 28 H 0.122 0.878 29 H -0.231 1.231 30 H -0.216 1.216 31 H 0.154 0.846 32 H 0.249 0.751 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.248 0.752 47 H 0.232 0.768 48 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.540 4.210 5.470 6.923 hybrid contribution 0.985 -1.932 -0.809 2.315 sum 1.526 2.277 4.660 5.407 Atomic orbital electron populations 1.86584 1.15914 1.82298 1.50745 1.25350 0.85998 1.11304 0.95924 0.93856 0.76862 0.72121 0.85012 1.20781 0.94081 0.93424 0.97613 1.20636 1.01063 0.96709 0.97175 1.19468 0.96016 0.94623 0.86999 1.19713 1.17879 1.04321 0.94348 1.17099 0.77479 0.80064 0.86882 1.90750 1.63523 1.73362 1.20441 1.45576 1.51886 1.27885 1.11073 1.21370 0.96507 0.91217 0.90337 1.21342 0.97289 0.93970 0.97899 0.88963 1.21598 0.97516 0.96569 0.99358 1.21456 0.99169 0.96348 0.97284 1.21187 0.97809 0.94647 0.97270 0.92179 1.22314 0.91352 0.90404 0.96083 1.86433 1.38271 1.40859 1.74919 1.21470 0.97379 0.96097 0.99450 1.21488 0.99219 0.96999 0.97207 1.24551 0.93543 0.95839 0.91022 1.77547 1.19534 1.07247 1.11356 1.46385 1.32407 1.19858 1.04999 1.22498 0.90568 0.83811 1.04142 1.21369 1.03462 1.03611 0.88142 0.74774 0.87806 1.23085 1.21647 0.84627 0.75070 0.92954 0.92275 0.91023 0.92951 0.92668 0.91106 0.93100 0.92612 0.75577 0.91148 0.90639 0.92190 0.90799 0.75158 0.76833 0.76003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.58 12.88 -148.98 -1.92 -0.34 16 2 C -0.08 0.16 2.84 71.23 0.20 0.36 16 3 Si 0.82 -3.95 31.96 68.60 2.19 -1.75 16 4 C -0.05 0.04 4.53 -19.82 -0.09 -0.05 16 5 C -0.14 -0.99 9.35 22.30 0.21 -0.79 16 6 C 0.15 1.30 6.76 39.49 0.27 1.56 16 7 C -0.35 -2.87 6.17 -19.90 -0.12 -3.00 16 8 C 0.59 6.24 7.78 86.41 0.67 6.92 16 9 O -0.60 -11.17 15.71 -4.42 -0.07 -11.24 16 10 N -0.71 -1.84 5.27 -467.16 -2.46 -4.31 16 11 C 0.13 0.31 5.06 86.38 0.44 0.75 16 12 C -0.09 0.23 2.22 -10.79 -0.02 0.21 16 13 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 14 C -0.11 0.19 5.08 30.59 0.16 0.35 16 15 C -0.11 0.10 5.10 30.60 0.16 0.26 16 16 C -0.09 0.06 2.43 -10.79 -0.03 0.03 16 17 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 18 C 0.08 -0.11 6.43 71.98 0.46 0.36 16 19 O -0.60 -1.00 13.20 -148.98 -1.97 -2.96 16 20 C -0.11 0.36 5.20 30.61 0.16 0.52 16 21 C -0.11 0.27 5.21 30.61 0.16 0.43 16 22 C 0.13 0.35 11.44 85.42 0.98 1.32 16 23 N -0.34 -1.83 12.57 -56.61 -0.71 -2.55 16 24 N -0.27 -1.16 3.86 -187.27 -0.72 -1.89 16 25 C 0.12 -0.57 11.17 83.31 0.93 0.36 16 26 C -0.15 1.25 8.38 22.03 0.18 1.43 16 27 H 0.40 -5.67 8.08 -74.06 -0.60 -6.27 16 28 H 0.10 0.17 7.71 -2.39 -0.02 0.15 16 29 H -0.30 -1.00 7.11 99.48 0.71 -0.30 16 30 H -0.29 -0.67 7.11 99.48 0.71 0.03 16 31 H 0.14 1.55 7.01 -2.91 -0.02 1.52 16 32 H 0.41 -1.62 6.57 -92.71 -0.61 -2.23 16 33 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.07 -0.25 7.18 -2.39 -0.02 -0.27 16 36 H 0.05 0.07 8.14 -2.39 -0.02 0.06 16 37 H 0.05 0.14 7.82 -2.39 -0.02 0.12 16 38 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.39 -2.60 9.12 -74.06 -0.68 -3.27 16 42 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 44 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.23 -1.59 7.46 -2.91 -0.02 -1.62 16 47 H 0.22 -2.71 8.06 -2.91 -0.02 -2.73 16 48 H 0.22 -4.58 7.31 -2.91 -0.02 -4.60 16 Total: 0.00 -32.95 388.84 -1.79 -34.75 By element: Atomic # 1 Polarization: -19.89 SS G_CDS: -0.84 Total: -20.74 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 4.71 Total: 11.03 kcal Atomic # 7 Polarization: -4.84 SS G_CDS: -3.90 Total: -8.74 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -3.95 Total: -14.55 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.19 Total: -1.75 kcal Total: -32.95 -1.79 -34.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.958 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds