Wall clock time and date at job start Tue Mar 9 2021 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86306 * 109.46935 * 2 1 4 4 C 1.50694 * 109.47193 * 239.99967 * 2 1 3 5 5 C 1.38227 * 120.00048 * 299.99909 * 4 2 1 6 6 C 1.38238 * 120.00266 * 179.97438 * 5 4 2 7 7 C 1.38245 * 119.99621 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99724 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47477 * 89.99431 * 8 7 6 10 10 O 1.21286 * 119.99933 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00477 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00325 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47228 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47497 * 54.99778 * 13 12 11 15 15 C 1.53002 * 109.47415 * 175.00130 * 13 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 13 18 18 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 17 16 15 20 20 O 1.42900 * 109.47498 * 174.99804 * 19 17 16 21 21 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 22 22 C 1.52997 * 109.47232 * 295.00003 * 13 12 11 23 23 C 1.38230 * 120.00041 * 0.27028 * 7 6 5 24 24 C 1.38238 * 120.00059 * 359.51989 * 23 7 6 25 25 H 0.96703 * 113.99708 * 299.99722 * 1 2 3 26 26 H 1.09000 * 109.47264 * 119.99447 * 2 1 3 27 27 H 1.48490 * 109.99986 * 300.00152 * 3 2 1 28 28 H 1.48498 * 109.99812 * 61.32004 * 3 2 1 29 29 H 1.08002 * 120.00200 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.00511 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47423 * 329.99181 * 8 7 6 32 32 H 1.09001 * 109.46855 * 209.99613 * 8 7 6 33 33 H 0.97003 * 119.99405 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47277 * 60.00341 * 12 11 9 35 35 H 1.09001 * 109.47111 * 300.00156 * 12 11 9 36 36 H 1.08992 * 109.47063 * 59.99950 * 15 13 12 37 37 H 1.09004 * 109.46733 * 299.99664 * 15 13 12 38 38 H 1.09002 * 109.47398 * 59.99826 * 16 15 13 39 39 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47359 * 295.00205 * 19 17 16 41 41 H 1.09002 * 109.46906 * 55.00224 * 19 17 16 42 42 H 0.96702 * 114.00498 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47486 * 180.02562 * 21 17 16 44 44 H 1.09002 * 109.46716 * 60.00091 * 21 17 16 45 45 H 1.09002 * 109.47153 * 299.99992 * 22 13 12 46 46 H 1.09001 * 109.47289 * 60.00075 * 22 13 12 47 47 H 1.07999 * 120.00250 * 179.72798 * 23 7 6 48 48 H 1.07994 * 120.00412 * 180.27458 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5974 -2.0338 -1.4491 6 6 2.0578 -2.6853 -2.5781 7 6 2.8517 -2.0131 -3.4886 8 6 3.3530 -2.7232 -4.7196 9 6 2.3594 -2.5499 -5.8392 10 8 1.3442 -1.9122 -5.6558 11 7 2.5993 -3.1028 -7.0448 12 6 1.6336 -2.9339 -8.1334 13 6 2.1426 -3.6550 -9.3831 14 1 2.3482 -4.6980 -9.1425 15 6 1.0793 -3.5849 -10.4810 16 6 1.5881 -4.3065 -11.7306 17 6 2.8721 -3.6341 -12.2205 18 1 2.6668 -2.5910 -12.4615 19 6 3.3806 -4.3552 -13.4704 20 8 4.5123 -3.6582 -13.9952 21 6 3.9354 -3.7041 -11.1227 22 6 3.4264 -2.9820 -9.8729 23 6 3.1897 -0.6912 -3.2673 24 6 2.7258 -0.0384 -2.1405 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5137 0.8900 27 1 1.5614 2.4679 -1.2084 28 1 1.5878 2.4585 1.2242 29 1 0.9769 -2.5588 -0.7380 30 1 1.7966 -3.7191 -2.7492 31 1 3.4746 -3.7845 -4.5027 32 1 4.3129 -2.3009 -5.0170 33 1 3.4114 -3.6126 -7.1916 34 1 1.5122 -1.8726 -8.3500 35 1 0.6737 -3.3563 -7.8363 36 1 0.8738 -2.5420 -10.7217 37 1 0.1647 -4.0644 -10.1321 38 1 1.7934 -5.3496 -11.4896 39 1 0.8308 -4.2562 -12.5129 40 1 3.6696 -5.3735 -13.2101 41 1 2.5905 -4.3823 -14.2209 42 1 4.8876 -4.0601 -14.7907 43 1 4.8500 -3.2246 -11.4716 44 1 4.1407 -4.7471 -10.8817 45 1 3.2209 -1.9390 -10.1136 46 1 4.1840 -3.0320 -9.0908 47 1 3.8136 -0.1673 -3.9764 48 1 2.9863 0.9957 -1.9698 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:12 Heat of formation + Delta-G solvation = -117.595011 kcal Electronic energy + Delta-G solvation = -26292.883226 eV Core-core repulsion = 22505.834063 eV Total energy + Delta-G solvation = -3787.049163 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22150 -40.37984 -39.75039 -37.84596 -37.57607 -35.75696 -34.19899 -32.78335 -31.93707 -31.70389 -30.01613 -27.95084 -25.76110 -24.50667 -23.81334 -23.67216 -22.08207 -21.67983 -21.23708 -20.68366 -18.60384 -18.24178 -18.10429 -17.64610 -17.03593 -16.84898 -16.53283 -16.14418 -16.01322 -15.84312 -15.40231 -15.11984 -14.99323 -14.79485 -14.63218 -14.55447 -14.36908 -14.02526 -13.94247 -13.49703 -13.40309 -13.17798 -13.08925 -12.93755 -12.77571 -12.49361 -12.26621 -12.05100 -11.92331 -11.90193 -11.76060 -11.41096 -11.20328 -11.06979 -10.95066 -10.77478 -10.54032 -10.09756 -9.87202 -9.58760 -4.97398 0.23577 0.45660 1.27059 1.56194 1.65161 1.92556 2.19154 2.75844 3.30332 3.39017 3.63744 3.65521 3.73236 3.76157 3.85219 3.90448 4.04458 4.05938 4.10992 4.20326 4.30092 4.32209 4.44341 4.45862 4.49015 4.49704 4.51105 4.58670 4.62759 4.66367 4.69656 4.72783 4.76910 4.82966 4.95675 5.02850 5.08987 5.09053 5.15392 5.22168 5.24226 5.31901 5.37836 5.43437 5.46793 5.54256 5.56717 5.58960 6.01730 6.55819 6.56493 6.88503 7.28164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.088 4.088 3 Si 0.767 3.233 4 C -0.092 4.092 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.073 4.073 8 C -0.096 4.096 9 C 0.509 3.491 10 O -0.586 6.586 11 N -0.717 5.717 12 C 0.126 3.874 13 C -0.086 4.086 14 H 0.092 0.908 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.091 4.091 18 H 0.059 0.941 19 C 0.076 3.924 20 O -0.596 6.596 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.126 4.126 25 H 0.394 0.606 26 H 0.097 0.903 27 H -0.307 1.307 28 H -0.283 1.283 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.417 0.583 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.395 0.605 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.143 0.857 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -5.294 -1.409 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.196 4.196 3 Si 0.673 3.327 4 C -0.092 4.092 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.073 4.073 8 C -0.136 4.136 9 C 0.297 3.703 10 O -0.465 6.465 11 N -0.370 5.370 12 C 0.002 3.998 13 C -0.105 4.105 14 H 0.110 0.890 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.109 4.109 18 H 0.078 0.922 19 C -0.002 4.002 20 O -0.405 6.405 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.143 4.143 25 H 0.244 0.756 26 H 0.115 0.885 27 H -0.235 1.235 28 H -0.210 1.210 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.244 0.756 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.161 0.839 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.442 -3.955 -1.329 6.857 hybrid contribution -1.182 -0.431 -0.169 1.269 sum 4.260 -4.386 -1.499 6.296 Atomic orbital electron populations 1.86565 1.18826 1.80660 1.51020 1.25064 0.83852 1.11975 0.98717 0.94215 0.90277 0.72106 0.76101 1.19505 0.98737 0.94679 0.96310 1.21101 0.99006 0.94415 0.98148 1.21256 0.97223 1.00815 0.94126 1.19599 0.97815 0.94468 0.95439 1.20760 0.98863 1.04531 0.89402 1.21109 0.87070 0.77977 0.84161 1.90756 1.30312 1.42271 1.83187 1.45924 1.25277 1.55192 1.10614 1.21327 0.92086 1.00021 0.86374 1.21331 0.95740 1.00493 0.92910 0.88971 1.21486 0.97931 1.01050 0.94575 1.21458 0.95809 0.99888 0.97267 1.21185 0.95740 0.99817 0.94195 0.92239 1.22313 0.87732 0.94967 0.95164 1.86432 1.48073 1.57070 1.48881 1.21469 0.97592 1.01043 0.94195 1.21600 0.96635 0.99064 0.97619 1.21219 1.00280 0.94183 0.97175 1.21122 0.98792 0.99846 0.94572 0.75569 0.88526 1.23506 1.20957 0.85748 0.84776 0.84984 0.84741 0.74534 0.93208 0.92701 0.92345 0.90997 0.90636 0.91311 0.92595 0.93200 0.75560 0.92608 0.91132 0.93003 0.90629 0.83946 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.66 12.74 -148.98 -1.90 -5.56 16 2 C -0.09 -0.28 2.81 71.23 0.20 -0.08 16 3 Si 0.77 0.89 29.79 68.60 2.04 2.93 16 4 C -0.09 -0.62 5.42 -19.87 -0.11 -0.73 16 5 C -0.11 -0.78 9.61 22.27 0.21 -0.56 16 6 C -0.12 -0.60 9.70 22.27 0.22 -0.38 16 7 C -0.07 -0.25 4.37 -19.87 -0.09 -0.34 16 8 C -0.10 0.34 5.83 29.10 0.17 0.51 16 9 C 0.51 1.72 7.82 87.65 0.69 2.41 16 10 O -0.59 -8.76 16.03 -3.05 -0.05 -8.81 16 11 N -0.72 1.75 5.28 -463.07 -2.45 -0.70 16 12 C 0.13 0.00 5.06 86.38 0.44 0.44 16 13 C -0.09 0.38 2.22 -10.79 -0.02 0.36 16 14 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 15 C -0.11 0.37 5.20 30.60 0.16 0.53 16 16 C -0.11 0.44 5.20 30.59 0.16 0.60 16 17 C -0.09 0.14 2.43 -10.80 -0.03 0.11 16 18 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 19 C 0.08 -0.16 6.43 71.98 0.46 0.30 16 20 O -0.60 -0.51 13.20 -148.98 -1.97 -2.48 16 21 C -0.11 0.25 5.10 30.61 0.16 0.40 16 22 C -0.11 0.42 5.08 30.61 0.16 0.57 16 23 C -0.11 -0.44 9.70 22.27 0.22 -0.22 16 24 C -0.13 -0.65 8.67 22.27 0.19 -0.46 16 25 H 0.39 -0.87 8.74 -74.06 -0.65 -1.51 16 26 H 0.10 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H -0.31 -2.97 7.11 99.48 0.71 -2.27 16 28 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 29 H 0.12 0.71 8.06 -2.91 -0.02 0.69 16 30 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 31 H 0.13 -1.18 8.09 -2.39 -0.02 -1.20 16 32 H 0.13 -1.25 8.08 -2.39 -0.02 -1.27 16 33 H 0.42 -3.84 7.65 -92.71 -0.71 -4.55 16 34 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.39 -2.89 9.12 -74.06 -0.68 -3.57 16 43 H 0.06 0.06 7.82 -2.39 -0.02 0.05 16 44 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.08 -0.47 7.18 -2.39 -0.02 -0.49 16 47 H 0.14 -0.09 8.06 -2.91 -0.02 -0.12 16 48 H 0.14 0.19 4.88 -2.91 -0.01 0.17 16 Total: 0.00 -25.70 383.35 -2.17 -27.86 By element: Atomic # 1 Polarization: -15.67 SS G_CDS: -1.03 Total: -16.70 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 3.18 Total: 3.45 kcal Atomic # 7 Polarization: 1.75 SS G_CDS: -2.45 Total: -0.70 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -3.91 Total: -16.84 kcal Atomic # 14 Polarization: 0.89 SS G_CDS: 2.04 Total: 2.93 kcal Total: -25.70 -2.17 -27.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.732 kcal (2) G-P(sol) polarization free energy of solvation -25.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds