Wall clock time and date at job start Tue Mar 9 2021 12:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47001 * 2 1 4 4 C 1.50695 * 109.47308 * 239.99725 * 2 1 3 5 5 C 1.35085 * 126.07169 * 105.18063 * 4 2 1 6 6 N 1.35046 * 107.97693 * 179.86916 * 5 4 2 7 7 C 1.46496 * 125.93237 * 180.10928 * 6 5 4 8 8 C 1.50703 * 109.47123 * 125.30495 * 7 6 5 9 9 O 1.21286 * 119.99523 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00229 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99972 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46882 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47289 * 305.00121 * 12 11 10 14 14 C 1.53001 * 109.47423 * 64.99814 * 12 11 10 15 15 C 1.53004 * 109.47128 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47052 * 300.00037 * 15 14 12 17 17 H 1.08998 * 109.47147 * 300.00015 * 16 15 14 18 18 C 1.52998 * 109.46867 * 180.02562 * 16 15 14 19 19 O 1.42897 * 109.47139 * 64.99879 * 18 16 15 20 20 C 1.52995 * 109.47051 * 60.00292 * 16 15 14 21 21 C 1.52997 * 109.47186 * 184.99922 * 12 11 10 22 22 N 1.40077 * 108.13788 * 0.39653 * 6 5 4 23 23 C 1.31621 * 108.10343 * 359.75269 * 22 6 5 24 24 C 1.48426 * 126.03282 * 179.97438 * 23 22 6 25 25 C 1.39323 * 120.12159 * 137.23420 * 24 23 22 26 26 C 1.38019 * 119.87796 * 179.74360 * 25 24 23 27 27 C 1.38316 * 120.12112 * 0.53487 * 26 25 24 28 28 C 1.38324 * 120.24103 * 359.73790 * 27 26 25 29 29 C 1.38017 * 120.12099 * 359.97438 * 28 27 26 30 30 H 0.96696 * 114.00433 * 300.00362 * 1 2 3 31 31 H 1.09001 * 109.46830 * 119.99814 * 2 1 3 32 32 H 1.48499 * 110.00340 * 299.99769 * 3 2 1 33 33 H 1.48508 * 110.00113 * 61.31734 * 3 2 1 34 34 H 1.07999 * 126.01526 * 359.97438 * 5 4 2 35 35 H 1.08992 * 109.47627 * 245.30803 * 7 6 5 36 36 H 1.09004 * 109.47045 * 5.31277 * 7 6 5 37 37 H 0.97003 * 119.99387 * 359.97438 * 10 8 7 38 38 H 1.08992 * 109.46996 * 300.00035 * 11 10 8 39 39 H 1.09004 * 109.46905 * 60.00035 * 11 10 8 40 40 H 1.08997 * 109.46989 * 299.99953 * 14 12 11 41 41 H 1.09004 * 109.46638 * 59.99908 * 14 12 11 42 42 H 1.08995 * 109.46725 * 180.02562 * 15 14 12 43 43 H 1.08998 * 109.47157 * 60.00046 * 15 14 12 44 44 H 1.09002 * 109.46981 * 184.99977 * 18 16 15 45 45 H 1.08997 * 109.47149 * 304.99779 * 18 16 15 46 46 H 0.96704 * 113.99510 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47519 * 180.02562 * 20 16 15 48 48 H 1.08998 * 109.47370 * 59.99860 * 20 16 15 49 49 H 1.09004 * 109.47170 * 300.00273 * 21 12 11 50 50 H 1.09007 * 109.46772 * 59.99809 * 21 12 11 51 51 H 1.08003 * 120.05395 * 0.02562 * 25 24 23 52 52 H 1.08001 * 119.93741 * 180.29059 * 26 25 24 53 53 H 1.08004 * 119.88176 * 179.76182 * 27 26 25 54 54 H 1.07999 * 119.93798 * 180.02562 * 28 27 26 55 55 H 1.07996 * 120.06495 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4661 -0.1252 -2.3241 6 7 2.7931 -1.0994 -3.2003 7 6 3.4038 -0.9018 -4.5172 8 6 4.6647 -1.7214 -4.6143 9 8 5.0181 -2.4039 -3.6760 10 7 5.3996 -1.6961 -5.7438 11 6 6.6251 -2.4934 -5.8383 12 6 7.2636 -2.2859 -7.2131 13 1 6.5348 -2.5152 -7.9906 14 6 7.7157 -0.8308 -7.3512 15 6 8.3549 -0.6235 -8.7258 16 6 9.5643 -1.5493 -8.8707 17 1 10.2928 -1.3199 -8.0930 18 6 10.2038 -1.3416 -10.2450 19 8 10.7301 -0.0158 -10.3300 20 6 9.1122 -3.0044 -8.7327 21 6 8.4730 -3.2117 -7.3587 22 7 2.4410 -2.3313 -2.6341 23 6 1.9213 -2.1021 -1.4468 24 6 1.4135 -3.1289 -0.5029 25 6 1.7060 -3.0350 0.8560 26 6 1.2268 -3.9897 1.7300 27 6 0.4668 -5.0443 1.2574 28 6 0.1782 -5.1455 -0.0916 29 6 0.6473 -4.1932 -0.9736 30 1 -0.3934 0.4417 0.7650 31 1 1.7923 -0.5138 0.8900 32 1 1.5615 2.4679 -1.2085 33 1 1.5878 2.4586 1.2243 34 1 2.6087 0.9352 -2.4713 35 1 2.7054 -1.2163 -5.2925 36 1 3.6449 0.1528 -4.6513 37 1 5.1167 -1.1506 -6.4943 38 1 7.3235 -2.1795 -5.0627 39 1 6.3836 -3.5479 -5.7048 40 1 6.8542 -0.1712 -7.2475 41 1 8.4445 -0.6015 -6.5737 42 1 8.6773 0.4130 -8.8239 43 1 7.6264 -0.8530 -9.5035 44 1 11.0099 -2.0621 -10.3834 45 1 9.4517 -1.4844 -11.0210 46 1 11.1519 0.1864 -11.1764 47 1 9.9738 -3.6640 -8.8355 48 1 8.3838 -3.2339 -9.5104 49 1 9.2018 -2.9824 -6.5812 50 1 8.1508 -4.2484 -7.2604 51 1 2.3028 -2.2141 1.2254 52 1 1.4490 -3.9153 2.7843 53 1 0.0970 -5.7913 1.9443 54 1 -0.4160 -5.9708 -0.4552 55 1 0.4210 -4.2728 -2.0265 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_12622748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:53 Heat of formation + Delta-G solvation = -24.074800 kcal Electronic energy + Delta-G solvation = -35075.557354 eV Core-core repulsion = 30465.958051 eV Total energy + Delta-G solvation = -4609.599304 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49269 -40.92133 -39.97762 -39.71064 -37.80003 -37.61225 -35.82551 -34.84431 -32.95716 -32.37933 -31.90956 -31.70450 -31.45950 -29.23173 -27.69496 -25.97572 -24.84574 -24.01413 -23.60043 -23.40962 -21.83448 -21.69907 -21.49564 -20.91250 -20.64248 -18.56664 -18.45675 -18.31302 -18.17388 -17.63378 -16.91395 -16.73513 -16.36481 -16.11167 -16.09832 -15.87386 -15.70363 -15.59137 -15.18670 -15.16372 -14.83318 -14.80498 -14.60759 -14.41083 -14.31670 -14.22374 -14.03384 -13.76590 -13.58679 -13.50867 -13.30529 -13.09077 -12.82933 -12.69857 -12.51178 -12.35028 -12.18367 -12.04427 -11.98620 -11.90717 -11.57552 -11.40901 -11.33413 -11.09487 -11.07144 -10.77959 -10.63594 -10.24780 -10.16926 -9.87964 -9.80230 -9.31005 -4.86111 0.10882 0.45841 0.79460 1.25095 1.38675 1.48919 1.63555 1.66295 1.98056 2.11127 2.88235 3.28808 3.30251 3.58302 3.61456 3.63316 3.73683 3.76335 3.77994 3.90341 3.95351 4.05495 4.09494 4.11065 4.13486 4.18054 4.25236 4.30242 4.35457 4.45019 4.49207 4.50521 4.52524 4.56440 4.59234 4.65965 4.69312 4.75307 4.76558 4.81165 4.87290 4.95820 4.98077 5.09277 5.10714 5.15637 5.22003 5.23950 5.28191 5.30352 5.37536 5.46285 5.55793 5.56434 5.56642 5.60217 5.88141 6.03259 6.45389 6.57013 6.70527 6.88194 7.15788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.053 4.053 3 Si 0.768 3.232 4 C -0.225 4.225 5 C 0.073 3.927 6 N -0.360 5.360 7 C 0.109 3.891 8 C 0.496 3.504 9 O -0.565 6.565 10 N -0.710 5.710 11 C 0.129 3.871 12 C -0.086 4.086 13 H 0.091 0.909 14 C -0.111 4.111 15 C -0.106 4.106 16 C -0.091 4.091 17 H 0.060 0.940 18 C 0.075 3.925 19 O -0.596 6.596 20 C -0.107 4.107 21 C -0.112 4.112 22 N -0.292 5.292 23 C 0.108 3.892 24 C -0.026 4.026 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.115 4.115 30 H 0.389 0.611 31 H 0.078 0.922 32 H -0.275 1.275 33 H -0.285 1.285 34 H 0.215 0.785 35 H 0.140 0.860 36 H 0.178 0.822 37 H 0.419 0.581 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.395 0.605 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.136 0.864 52 H 0.151 0.849 53 H 0.148 0.852 54 H 0.141 0.859 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 4.067 -4.667 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.162 4.162 3 Si 0.670 3.330 4 C -0.237 4.237 5 C -0.072 4.072 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.281 3.719 9 O -0.442 6.442 10 N -0.365 5.365 11 C 0.005 3.995 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.148 4.148 15 C -0.143 4.143 16 C -0.109 4.109 17 H 0.079 0.921 18 C -0.002 4.002 19 O -0.404 6.404 20 C -0.145 4.145 21 C -0.150 4.150 22 N -0.114 5.114 23 C -0.057 4.057 24 C -0.028 4.028 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.134 4.134 30 H 0.238 0.762 31 H 0.096 0.904 32 H -0.202 1.202 33 H -0.212 1.212 34 H 0.231 0.769 35 H 0.157 0.843 36 H 0.195 0.805 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.244 0.756 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.154 0.846 52 H 0.169 0.831 53 H 0.165 0.835 54 H 0.158 0.842 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.646 3.281 -5.012 6.549 hybrid contribution -1.069 0.293 0.046 1.109 sum 1.578 3.574 -4.965 6.318 Atomic orbital electron populations 1.86598 1.19067 1.80650 1.50404 1.24472 0.83533 1.11797 0.96362 0.94250 0.89991 0.70982 0.77789 1.19613 1.12895 0.91829 0.99319 1.22763 0.98822 0.96605 0.89055 1.48099 1.47365 1.03573 1.15107 1.21991 0.92914 1.04705 0.81819 1.21010 0.85627 0.82507 0.82790 1.90823 1.71430 1.42703 1.39291 1.45777 1.25307 1.48741 1.16644 1.21330 0.85280 0.94892 0.97954 1.21332 0.97648 0.96204 0.95293 0.89066 1.21594 1.00758 0.95389 0.97103 1.21463 0.96450 0.99111 0.97313 1.21183 0.97450 0.96004 0.96277 0.92106 1.22313 0.97042 0.83427 0.97429 1.86430 1.79159 1.32192 1.42623 1.21446 1.00884 0.94683 0.97444 1.21475 0.96675 0.99438 0.97461 1.77690 1.19514 1.04069 1.10107 1.20894 0.98334 0.93656 0.92816 1.18001 0.98923 0.93517 0.92376 1.21343 0.99749 0.99879 0.91491 1.21420 0.97595 0.94112 1.00782 1.21585 0.97847 0.98633 0.95662 1.21349 1.00237 0.98988 0.93883 1.21260 0.98017 0.94320 0.99844 0.76155 0.90437 1.20159 1.21162 0.76882 0.84287 0.80461 0.74263 0.92752 0.92933 0.90357 0.92764 0.92516 0.91251 0.93261 0.92691 0.75575 0.91368 0.90771 0.92177 0.91168 0.84591 0.83127 0.83457 0.84161 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.31 12.86 -148.98 -1.92 -5.22 16 2 C -0.05 -0.16 2.49 71.23 0.18 0.01 16 3 Si 0.77 -1.66 30.77 68.60 2.11 0.46 16 4 C -0.23 -1.74 5.39 -19.96 -0.11 -1.85 16 5 C 0.07 0.22 9.96 83.47 0.83 1.05 16 6 N -0.36 -2.08 3.40 -351.92 -1.20 -3.28 16 7 C 0.11 -0.45 6.99 85.63 0.60 0.14 16 8 C 0.50 1.24 7.86 87.66 0.69 1.93 16 9 O -0.57 -8.49 15.70 -3.05 -0.05 -8.53 16 10 N -0.71 3.01 5.28 -463.06 -2.45 0.57 16 11 C 0.13 -0.16 5.07 86.38 0.44 0.27 16 12 C -0.09 0.48 2.23 -10.80 -0.02 0.46 16 13 H 0.09 -0.68 8.14 -2.38 -0.02 -0.70 16 14 C -0.11 0.60 5.08 30.60 0.16 0.76 16 15 C -0.11 0.37 5.10 30.60 0.16 0.53 16 16 C -0.09 0.21 2.43 -10.80 -0.03 0.18 16 17 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 18 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 19 O -0.60 -0.14 13.19 -148.98 -1.97 -2.11 16 20 C -0.11 0.50 5.20 30.58 0.16 0.66 16 21 C -0.11 0.45 5.20 30.58 0.16 0.61 16 22 N -0.29 -4.27 11.67 -48.16 -0.56 -4.83 16 23 C 0.11 1.45 6.67 42.53 0.28 1.73 16 24 C -0.03 -0.33 5.74 -20.04 -0.12 -0.44 16 25 C -0.11 -0.83 8.89 22.48 0.20 -0.63 16 26 C -0.12 -0.53 10.03 22.24 0.22 -0.30 16 27 C -0.12 -0.52 10.04 22.31 0.22 -0.29 16 28 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 29 C -0.12 -1.35 9.78 22.48 0.22 -1.13 16 30 H 0.39 -0.92 8.74 -74.06 -0.65 -1.57 16 31 H 0.08 0.08 5.57 -2.39 -0.01 0.07 16 32 H -0.28 -0.38 7.04 99.48 0.70 0.32 16 33 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 34 H 0.21 -1.25 6.35 -2.91 -0.02 -1.26 16 35 H 0.14 -1.18 8.14 -2.39 -0.02 -1.20 16 36 H 0.18 -2.59 8.07 -2.38 -0.02 -2.61 16 37 H 0.42 -4.93 7.66 -92.71 -0.71 -5.64 16 38 H 0.05 0.12 8.14 -2.39 -0.02 0.11 16 39 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.08 -0.67 7.18 -2.39 -0.02 -0.69 16 41 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 42 H 0.06 0.00 7.82 -2.39 -0.02 -0.02 16 43 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.39 -3.08 9.12 -74.05 -0.68 -3.76 16 47 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 50 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 51 H 0.14 0.59 6.21 -2.91 -0.02 0.57 16 52 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 53 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 54 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 55 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 Total: 0.00 -34.56 442.43 -2.17 -36.74 By element: Atomic # 1 Polarization: -16.00 SS G_CDS: -1.08 Total: -17.07 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.93 Total: 3.29 kcal Atomic # 7 Polarization: -3.34 SS G_CDS: -4.20 Total: -7.55 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -3.93 Total: -15.87 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.11 Total: 0.46 kcal Total: -34.56 -2.17 -36.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_12622748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.660 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds