Wall clock time and date at job start Tue Mar 9 2021 13:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38340 * 119.87245 * 119.72433 * 4 2 1 6 6 C 1.38000 * 120.12364 * 179.72744 * 5 4 2 7 7 C 1.39399 * 119.87572 * 0.54334 * 6 5 4 8 8 C 1.48269 * 120.12886 * 179.70838 * 7 6 5 9 9 C 1.39511 * 119.97676 * 179.75077 * 8 7 6 10 10 C 1.37660 * 120.02396 * 179.72587 * 9 8 7 11 11 C 1.39710 * 119.97937 * 0.52373 * 10 9 8 12 12 C 1.47716 * 120.02751 * 179.72808 * 11 10 9 13 13 O 1.21573 * 119.99693 * 180.02562 * 12 11 10 14 14 N 1.34778 * 120.00148 * 0.02562 * 12 11 10 15 15 C 1.46501 * 120.00171 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46991 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.46855 * 55.00522 * 16 15 14 18 18 C 1.53003 * 109.46702 * 174.99804 * 16 15 14 19 19 C 1.53006 * 109.46707 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47232 * 299.99975 * 19 18 16 21 21 H 1.08997 * 109.47227 * 300.00589 * 20 19 18 22 22 C 1.52996 * 109.46895 * 179.97438 * 20 19 18 23 23 O 1.42900 * 109.47008 * 175.00323 * 22 20 19 24 24 C 1.53005 * 109.46750 * 60.00222 * 20 19 18 25 25 C 1.52993 * 109.47348 * 294.99942 * 16 15 14 26 26 C 1.39709 * 119.94822 * 359.74646 * 11 10 9 27 27 C 1.37664 * 119.97511 * 0.02562 * 26 11 10 28 28 C 1.39405 * 119.74389 * 359.72651 * 7 6 5 29 29 C 1.37997 * 119.87229 * 0.02562 * 28 7 6 30 30 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 31 31 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 32 32 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 33 33 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 34 34 H 1.07998 * 119.93240 * 359.97438 * 5 4 2 35 35 H 1.08006 * 120.05973 * 180.27517 * 6 5 4 36 36 H 1.08001 * 119.98557 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.01434 * 180.24843 * 10 9 8 38 38 H 0.96996 * 119.99828 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.47246 * 300.00194 * 15 14 12 40 40 H 1.09000 * 109.46887 * 59.99513 * 15 14 12 41 41 H 1.08993 * 109.47381 * 299.99904 * 18 16 15 42 42 H 1.09002 * 109.46879 * 60.00733 * 18 16 15 43 43 H 1.08994 * 109.46999 * 60.00392 * 19 18 16 44 44 H 1.09000 * 109.47011 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.47556 * 295.00162 * 22 20 19 46 46 H 1.09007 * 109.46972 * 55.00483 * 22 20 19 47 47 H 0.96705 * 114.00526 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.46956 * 60.00201 * 24 20 19 49 49 H 1.08996 * 109.46624 * 179.97438 * 24 20 19 50 50 H 1.09002 * 109.47616 * 300.00114 * 25 16 15 51 51 H 1.09000 * 109.46867 * 60.00160 * 25 16 15 52 52 H 1.07996 * 120.01440 * 179.97438 * 26 11 10 53 53 H 1.08003 * 119.98760 * 179.97438 * 27 26 11 54 54 H 1.08001 * 120.06252 * 179.97438 * 28 7 6 55 55 H 1.07994 * 119.94067 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7217 -0.0337 -2.1422 6 6 3.1892 -0.6807 -3.2679 7 6 2.8542 -2.0153 -3.4913 8 6 3.3480 -2.7140 -4.7021 9 6 3.0151 -4.0512 -4.9199 10 6 3.4684 -4.6993 -6.0466 11 6 4.2712 -4.0207 -6.9669 12 6 4.7632 -4.7168 -8.1732 13 8 5.4621 -4.1259 -8.9734 14 7 4.4372 -6.0070 -8.3869 15 6 4.9256 -6.6975 -9.5831 16 6 4.4156 -8.1400 -9.5831 17 1 3.3292 -8.1413 -9.4936 18 6 4.8204 -8.8239 -10.8905 19 6 4.3098 -10.2663 -10.8908 20 6 4.9193 -11.0234 -9.7092 21 1 6.0056 -11.0224 -9.7985 22 6 4.4082 -12.4654 -9.7092 23 8 5.0654 -13.2037 -8.6771 24 6 4.5145 -10.3393 -8.4018 25 6 5.0255 -8.8967 -8.4015 26 6 4.6087 -2.6832 -6.7450 27 6 4.1504 -2.0357 -5.6199 28 6 2.0527 -2.6903 -2.5719 29 6 1.5952 -2.0346 -1.4471 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 0.8900 32 1 1.5614 2.4679 1.2086 33 1 3.5344 1.7704 -0.0321 34 1 2.9767 1.0016 -1.9706 35 1 3.8100 -0.1528 -3.9768 36 1 2.3981 -4.5770 -4.2061 37 1 3.2072 -5.7333 -6.2170 38 1 3.8792 -6.4783 -7.7486 39 1 4.5627 -6.1834 -10.4731 40 1 6.0156 -6.6978 -9.5828 41 1 4.3858 -8.2849 -11.7323 42 1 5.9067 -8.8227 -10.9800 43 1 3.2235 -10.2672 -10.8016 44 1 4.5985 -10.7537 -11.8220 45 1 3.3330 -12.4699 -9.5308 46 1 4.6182 -12.9253 -10.6750 47 1 4.7899 -14.1288 -8.6188 48 1 3.4282 -10.3403 -8.3125 49 1 4.9483 -10.8789 -7.5600 50 1 6.1119 -8.8954 -8.4910 51 1 4.7371 -8.4094 -7.4702 52 1 5.2296 -2.1577 -7.4554 53 1 4.4115 -1.0019 -5.4480 54 1 1.7896 -3.7242 -2.7400 55 1 0.9739 -2.5564 -0.7343 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:09 Heat of formation + Delta-G solvation = -83.303105 kcal Electronic energy + Delta-G solvation = -33320.655127 eV Core-core repulsion = 28866.650791 eV Total energy + Delta-G solvation = -4454.004335 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.49687 -40.77733 -40.06128 -39.18880 -37.64499 -37.49167 -35.89558 -34.11187 -32.95318 -32.46517 -31.70789 -31.57299 -30.82695 -28.27039 -26.85614 -25.04692 -24.65144 -24.13533 -23.57778 -22.58826 -22.21580 -21.68547 -21.26639 -20.72055 -19.29456 -18.43659 -18.21281 -17.74800 -17.27644 -16.80334 -16.68348 -16.30783 -16.18260 -16.04278 -15.90737 -15.68890 -15.43261 -15.20956 -15.09278 -14.96036 -14.88876 -14.77723 -14.61892 -14.34075 -14.19812 -14.05676 -13.93129 -13.57075 -13.47732 -13.17091 -13.09769 -12.82682 -12.73776 -12.56240 -12.50489 -12.07571 -12.04795 -11.95657 -11.90646 -11.59391 -11.41155 -11.27257 -11.07382 -11.01636 -10.79871 -10.77451 -10.40641 -10.18540 -10.06935 -9.95691 -9.06979 -5.01207 -0.69392 0.34456 0.40601 0.50023 1.30650 1.61685 1.78313 1.95401 2.07031 2.60853 3.01182 3.30528 3.40152 3.53543 3.59703 3.64808 3.66865 3.72990 3.75308 3.80709 3.87396 4.01200 4.05261 4.09293 4.18060 4.26797 4.28659 4.30749 4.37193 4.44518 4.47891 4.48661 4.50682 4.58361 4.64370 4.64654 4.68217 4.69942 4.76378 4.79985 4.88891 4.91845 4.95598 5.08629 5.08651 5.12917 5.15356 5.20275 5.21223 5.23937 5.26170 5.29610 5.36888 5.41471 5.45805 5.50123 5.55899 5.65309 5.79328 5.93368 6.42607 6.75823 6.88400 7.10135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.773 3.227 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.120 4.120 10 C -0.075 4.075 11 C -0.152 4.152 12 C 0.553 3.447 13 O -0.583 6.583 14 N -0.710 5.710 15 C 0.124 3.876 16 C -0.087 4.087 17 H 0.092 0.908 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.091 4.091 21 H 0.060 0.940 22 C 0.076 3.924 23 O -0.597 6.597 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.071 4.071 27 C -0.122 4.122 28 C -0.107 4.107 29 C -0.102 4.102 30 H 0.395 0.605 31 H 0.107 0.893 32 H -0.301 1.301 33 H -0.286 1.286 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.413 0.587 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.395 0.605 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.071 0.929 52 H 0.128 0.872 53 H 0.149 0.851 54 H 0.146 0.854 55 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -2.909 -0.863 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.138 4.138 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.342 3.658 13 O -0.465 6.465 14 N -0.363 5.363 15 C 0.001 3.999 16 C -0.106 4.106 17 H 0.111 0.889 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.110 4.110 21 H 0.079 0.921 22 C -0.002 4.002 23 O -0.405 6.405 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.090 4.090 27 C -0.139 4.139 28 C -0.125 4.125 29 C -0.120 4.120 30 H 0.245 0.755 31 H 0.124 0.876 32 H -0.229 1.229 33 H -0.213 1.213 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.252 0.748 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.244 0.756 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.146 0.854 53 H 0.167 0.833 54 H 0.163 0.837 55 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.731 -1.687 -0.398 4.114 hybrid contribution -0.020 -1.312 0.324 1.351 sum -3.751 -2.999 -0.074 4.803 Atomic orbital electron populations 1.86467 1.17146 1.82144 1.50542 1.25149 0.85340 1.10607 0.97252 0.93733 0.77865 0.75622 0.84849 1.20536 0.98954 0.95436 0.96983 1.21141 0.98115 1.00234 0.94276 1.21483 0.99382 0.93814 0.97746 1.18929 0.98777 0.94181 0.94142 1.19150 0.95803 0.94003 0.93306 1.21466 1.00548 0.93712 0.98043 1.21449 0.94618 1.00625 0.92649 1.19997 1.03493 0.95736 0.96303 1.18585 0.79486 0.82122 0.85581 1.90772 1.40040 1.67301 1.48340 1.45834 1.53243 1.11136 1.26055 1.21451 0.98912 0.92459 0.87110 1.21350 1.01529 0.91487 0.96219 0.88948 1.21480 1.01325 0.95508 0.96595 1.21461 1.01028 0.94675 0.97263 1.21192 1.00406 0.93150 0.96203 0.92143 1.22319 0.95941 0.91891 0.90032 1.86435 1.69045 1.28327 1.56689 1.21463 1.01154 0.94807 0.96832 1.21613 1.00206 0.95338 0.97933 1.21265 0.97313 0.93378 0.97014 1.21393 0.97832 1.01290 0.93412 1.21517 0.96633 1.00899 0.93454 1.21088 0.99209 0.94058 0.97635 0.75465 0.87554 1.22934 1.21333 0.83850 0.83596 0.82670 0.82691 0.74811 0.91870 0.92586 0.90693 0.92121 0.90653 0.91164 0.92625 0.93127 0.75581 0.91128 0.92688 0.92822 0.91069 0.85413 0.83305 0.83655 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.34 12.76 -148.98 -1.90 -1.56 16 2 C -0.07 0.09 2.82 71.24 0.20 0.29 16 3 Si 0.77 -1.97 29.77 68.60 2.04 0.08 16 4 C -0.12 0.13 5.40 -19.82 -0.11 0.02 16 5 C -0.12 0.29 8.65 22.24 0.19 0.48 16 6 C -0.11 0.20 9.43 22.49 0.21 0.42 16 7 C -0.06 0.04 5.88 -20.05 -0.12 -0.08 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 9 C -0.12 0.35 9.41 22.44 0.21 0.56 16 10 C -0.07 0.20 9.52 22.49 0.21 0.42 16 11 C -0.15 -0.49 5.88 -20.06 -0.12 -0.61 16 12 C 0.55 3.73 7.77 86.75 0.67 4.41 16 13 O -0.58 -9.08 16.33 -3.95 -0.06 -9.15 16 14 N -0.71 0.13 5.23 -466.09 -2.44 -2.30 16 15 C 0.12 0.01 5.06 86.38 0.44 0.45 16 16 C -0.09 0.39 2.22 -10.80 -0.02 0.37 16 17 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 18 C -0.11 0.45 5.20 30.60 0.16 0.61 16 19 C -0.11 0.50 5.20 30.60 0.16 0.66 16 20 C -0.09 0.16 2.43 -10.79 -0.03 0.14 16 21 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 22 C 0.08 -0.18 6.43 71.98 0.46 0.29 16 23 O -0.60 -0.48 13.19 -148.98 -1.97 -2.45 16 24 C -0.11 0.24 5.10 30.61 0.16 0.40 16 25 C -0.11 0.39 5.08 30.61 0.16 0.54 16 26 C -0.07 -0.28 9.58 22.49 0.22 -0.07 16 27 C -0.12 -0.06 9.41 22.44 0.21 0.15 16 28 C -0.11 0.19 9.43 22.49 0.21 0.41 16 29 C -0.10 0.08 9.59 22.24 0.21 0.29 16 30 H 0.40 -3.37 8.70 -74.06 -0.64 -4.01 16 31 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 32 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 33 H -0.29 -0.62 7.11 99.48 0.71 0.08 16 34 H 0.14 -0.87 4.86 -2.91 -0.01 -0.89 16 35 H 0.15 -0.82 6.19 -2.91 -0.02 -0.84 16 36 H 0.16 -1.23 6.19 -2.91 -0.02 -1.24 16 37 H 0.16 -1.44 6.39 -2.91 -0.02 -1.46 16 38 H 0.41 -2.62 5.67 -92.71 -0.53 -3.14 16 39 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 47 H 0.39 -2.89 9.12 -74.05 -0.68 -3.57 16 48 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.05 0.07 7.82 -2.39 -0.02 0.06 16 50 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.07 -0.38 7.18 -2.39 -0.02 -0.40 16 52 H 0.13 0.71 7.64 -2.91 -0.02 0.69 16 53 H 0.15 -0.54 6.19 -2.91 -0.02 -0.56 16 54 H 0.15 -0.88 6.19 -2.91 -0.02 -0.90 16 55 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: 0.00 -23.51 432.74 -1.62 -25.13 By element: Atomic # 1 Polarization: -18.91 SS G_CDS: -0.87 Total: -19.78 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 3.58 Total: 10.03 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -2.44 Total: -2.30 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -3.93 Total: -13.16 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.04 Total: 0.08 kcal Total: -23.51 -1.62 -25.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.169 kcal (2) G-P(sol) polarization free energy of solvation -23.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds