Wall clock time and date at job start Tue Mar 9 2021 13:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.47138 * 2 1 4 4 C 1.50703 * 109.47119 * 120.00258 * 2 1 3 5 5 C 1.34187 * 126.53742 * 254.97240 * 4 2 1 6 6 N 1.36863 * 109.96710 * 179.97438 * 5 4 2 7 7 C 1.37406 * 109.97913 * 0.02562 * 6 5 4 8 8 C 1.39333 * 133.24999 * 180.02562 * 7 6 5 9 9 C 1.36353 * 120.23643 * 179.97438 * 8 7 6 10 10 C 1.40168 * 120.66530 * 0.26199 * 9 8 7 11 11 C 1.47658 * 119.96810 * 179.73808 * 10 9 8 12 12 O 1.21581 * 120.00043 * 179.97438 * 11 10 9 13 13 N 1.34778 * 120.00461 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00065 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46898 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.46967 * 54.99979 * 15 14 13 17 17 C 1.52994 * 109.47155 * 174.99979 * 15 14 13 18 18 C 1.53004 * 109.47189 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46891 * 299.99755 * 18 17 15 20 20 H 1.09003 * 109.47192 * 300.00086 * 19 18 17 21 21 C 1.52992 * 109.47111 * 180.02562 * 19 18 17 22 22 O 1.42904 * 109.47397 * 175.00197 * 21 19 18 23 23 C 1.52994 * 109.47004 * 60.00131 * 19 18 17 24 24 C 1.53001 * 109.47231 * 294.99921 * 15 14 13 25 25 C 1.39184 * 120.05807 * 359.48442 * 10 9 8 26 26 C 1.39231 * 119.38990 * 0.50262 * 25 10 9 27 27 H 0.96700 * 113.99930 * 300.00104 * 1 2 3 28 28 H 1.09004 * 109.46910 * 239.99899 * 2 1 3 29 29 H 1.48499 * 110.00085 * 300.00140 * 3 2 1 30 30 H 1.48497 * 109.99909 * 61.31901 * 3 2 1 31 31 H 1.08001 * 125.01670 * 0.02562 * 5 4 2 32 32 H 0.96993 * 125.01116 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.87939 * 359.95512 * 8 7 6 34 34 H 1.08002 * 119.66194 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99752 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47384 * 299.99573 * 14 13 11 37 37 H 1.08993 * 109.47220 * 60.00248 * 14 13 11 38 38 H 1.09000 * 109.47105 * 299.99889 * 17 15 14 39 39 H 1.08995 * 109.47372 * 59.99837 * 17 15 14 40 40 H 1.08989 * 109.47418 * 59.99916 * 18 17 15 41 41 H 1.09000 * 109.46990 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47176 * 294.99706 * 21 19 18 43 43 H 1.08993 * 109.47555 * 54.99883 * 21 19 18 44 44 H 0.96698 * 114.00030 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.47372 * 60.00244 * 23 19 18 46 46 H 1.09000 * 109.47105 * 180.02562 * 23 19 18 47 47 H 1.08995 * 109.46857 * 299.99893 * 24 15 14 48 48 H 1.09000 * 109.46803 * 60.00332 * 24 15 14 49 49 H 1.07992 * 120.30632 * 180.25506 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.4612 -0.1388 2.3227 6 7 2.8026 -1.1005 3.2347 7 6 2.4947 -2.3455 2.7416 8 6 2.6323 -3.6350 3.2511 9 6 2.2278 -4.7103 2.5168 10 6 1.6743 -4.5371 1.2407 11 6 1.2467 -5.7128 0.4564 12 8 0.7662 -5.5632 -0.6504 13 7 1.3881 -6.9518 0.9677 14 6 0.9633 -8.1181 0.1898 15 6 1.2322 -9.3923 0.9930 16 1 0.7460 -9.3181 1.9657 17 6 0.6759 -10.5996 0.2355 18 6 0.9443 -11.8737 1.0390 19 6 2.4521 -12.0450 1.2348 20 1 2.9386 -12.1195 0.2622 21 6 2.7205 -13.3194 2.0377 22 8 4.1297 -13.5419 2.1211 23 6 3.0084 -10.8378 1.9922 24 6 2.7401 -9.5634 1.1883 25 6 1.5227 -3.2575 0.7144 26 6 1.9348 -2.1578 1.4622 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.5974 0.9235 2.4620 32 1 3.2034 -0.9286 4.1010 33 1 3.0612 -3.7833 4.2311 34 1 2.3392 -5.7057 2.9206 35 1 1.7711 -7.0711 1.8509 36 1 -0.1025 -8.0425 -0.0260 37 1 1.5218 -8.1540 -0.7455 38 1 -0.3983 -10.4778 0.0964 39 1 1.1621 -10.6739 -0.7372 40 1 0.4578 -11.7993 2.0114 41 1 0.5484 -12.7339 0.4991 42 1 2.3101 -13.2096 3.0415 43 1 2.2475 -14.1673 1.5424 44 1 4.3739 -14.3348 2.6178 45 1 2.5219 -10.7633 2.9647 46 1 4.0826 -10.9596 2.1313 47 1 3.2262 -9.6376 0.2156 48 1 3.1364 -8.7033 1.7280 49 1 1.0930 -3.1192 -0.2667 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14939082_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:26 Heat of formation + Delta-G solvation = -76.945475 kcal Electronic energy + Delta-G solvation = -29534.449082 eV Core-core repulsion = 25427.284423 eV Total energy + Delta-G solvation = -4107.164659 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47525 -40.85862 -39.92677 -37.99800 -37.66925 -37.34891 -35.69017 -33.29098 -32.87095 -31.77278 -30.84540 -30.47579 -28.06066 -26.47895 -25.28796 -24.10595 -23.59425 -23.43290 -21.68892 -21.41451 -20.89146 -20.62479 -19.33342 -18.44774 -18.24112 -17.56810 -17.32067 -16.80236 -16.57668 -16.19627 -16.02737 -15.90182 -15.63494 -15.40996 -15.24130 -15.06935 -14.95046 -14.75709 -14.67613 -14.52820 -14.12682 -13.93431 -13.72881 -13.50914 -13.42820 -13.15842 -12.87362 -12.59235 -12.48298 -12.42198 -12.12175 -12.09095 -11.93108 -11.76443 -11.46672 -11.21823 -11.11287 -10.85297 -10.77890 -10.74696 -10.44812 -9.96977 -9.30793 -8.82231 -4.95155 -0.02457 0.20629 1.31059 1.47948 1.56470 1.95608 2.00605 2.06115 2.27101 3.00644 3.18307 3.51230 3.56348 3.60123 3.67357 3.71760 3.74457 3.80960 3.89249 4.03274 4.10140 4.14994 4.23810 4.37359 4.38678 4.42514 4.44322 4.45705 4.51410 4.52275 4.58780 4.61143 4.64999 4.75664 4.81852 4.86281 4.91249 5.02689 5.04138 5.10183 5.15257 5.19545 5.25139 5.27394 5.39700 5.40723 5.46422 5.50671 5.58687 5.61743 5.99526 6.35898 6.53913 6.61771 6.66356 7.39195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.042 4.042 3 Si 0.687 3.313 4 C -0.187 4.187 5 C 0.058 3.942 6 N -0.585 5.585 7 C 0.118 3.882 8 C -0.134 4.134 9 C -0.066 4.066 10 C -0.168 4.168 11 C 0.563 3.437 12 O -0.538 6.538 13 N -0.728 5.728 14 C 0.123 3.877 15 C -0.100 4.100 16 H 0.078 0.922 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.089 4.089 20 H 0.078 0.922 21 C 0.078 3.922 22 O -0.574 6.574 23 C -0.110 4.110 24 C -0.116 4.116 25 C 0.008 3.992 26 C -0.102 4.102 27 H 0.373 0.627 28 H 0.116 0.884 29 H -0.256 1.256 30 H -0.260 1.260 31 H 0.176 0.824 32 H 0.421 0.579 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.399 0.601 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.380 0.620 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -0.742 6.592 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.153 4.153 3 Si 0.588 3.412 4 C -0.195 4.195 5 C -0.068 4.068 6 N -0.187 5.187 7 C 0.010 3.990 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.172 4.172 11 C 0.351 3.649 12 O -0.416 6.416 13 N -0.380 5.380 14 C 0.000 4.000 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.107 4.107 20 H 0.096 0.904 21 C 0.000 4.000 22 O -0.379 6.379 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.012 4.012 26 C -0.107 4.107 27 H 0.220 0.780 28 H 0.134 0.866 29 H -0.180 1.180 30 H -0.185 1.185 31 H 0.193 0.807 32 H 0.259 0.741 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.227 0.773 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.977 0.490 4.977 5.820 hybrid contribution -0.714 -0.751 1.891 2.157 sum 2.262 -0.261 6.868 7.236 Atomic orbital electron populations 1.86644 1.17916 1.79874 1.48958 1.24372 0.83516 1.10054 0.97345 0.95190 0.91416 0.74127 0.80491 1.20696 1.09022 0.91939 0.97820 1.21746 1.01067 0.94431 0.89583 1.41731 1.54673 1.04157 1.18155 1.18436 0.99910 0.86491 0.94209 1.19660 1.05790 0.88859 1.01145 1.20583 0.96745 0.98309 0.92998 1.19558 1.08136 0.93313 0.96188 1.18175 0.78045 0.82897 0.85779 1.90801 1.44530 1.86096 1.20162 1.45895 1.65197 1.05802 1.21148 1.21433 1.00514 0.83304 0.94744 1.21443 0.96904 0.93835 0.99669 0.90409 1.21468 1.01168 0.93188 0.98991 1.21502 0.94827 0.97929 1.00726 1.21174 0.96007 0.93722 0.99824 0.90356 1.22245 0.81691 0.97132 0.98887 1.86475 1.23124 1.49759 1.78557 1.21521 1.01615 0.93354 0.98238 1.21640 0.94926 0.97740 1.01027 1.20701 0.92404 0.89184 0.98898 1.18916 1.04526 0.92917 0.94308 0.77973 0.86587 1.18006 1.18511 0.80724 0.74145 0.85470 0.85491 0.76564 0.91238 0.91188 0.91236 0.91301 0.91643 0.91484 0.93710 0.93684 0.77333 0.92164 0.91075 0.91479 0.91956 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.26 12.88 -35.23 -0.45 -1.72 16 2 C -0.04 -0.02 3.06 36.01 0.11 0.09 16 3 Si 0.69 -0.88 30.82 -169.99 -5.24 -6.12 16 4 C -0.19 -0.14 5.58 -102.69 -0.57 -0.71 16 5 C 0.06 -0.09 10.43 -16.73 -0.17 -0.26 16 6 N -0.58 1.03 6.05 -10.61 -0.06 0.97 16 7 C 0.12 0.08 7.27 -83.95 -0.61 -0.53 16 8 C -0.13 0.06 10.00 -39.85 -0.40 -0.34 16 9 C -0.07 0.00 9.46 -39.54 -0.37 -0.37 16 10 C -0.17 -0.45 5.87 -104.98 -0.62 -1.07 16 11 C 0.56 2.25 7.76 -12.41 -0.10 2.15 16 12 O -0.54 -4.30 16.33 5.29 0.09 -4.21 16 13 N -0.73 -0.51 5.23 -61.31 -0.32 -0.83 16 14 C 0.12 0.06 5.06 -4.04 -0.02 0.04 16 15 C -0.10 0.15 2.22 -90.62 -0.20 -0.05 16 16 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 17 C -0.11 0.16 5.20 -26.73 -0.14 0.02 16 18 C -0.11 0.18 5.20 -26.73 -0.14 0.05 16 19 C -0.09 0.05 2.43 -90.63 -0.22 -0.16 16 20 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 21 C 0.08 -0.06 6.43 37.15 0.24 0.18 16 22 O -0.57 -0.31 13.20 -35.23 -0.46 -0.77 16 23 C -0.11 0.08 5.10 -26.71 -0.14 -0.06 16 24 C -0.12 0.14 5.08 -26.71 -0.14 0.01 16 25 C 0.01 0.03 9.64 -38.86 -0.37 -0.35 16 26 C -0.10 -0.25 6.34 -105.16 -0.67 -0.92 16 27 H 0.37 -0.29 8.70 45.56 0.40 0.11 16 28 H 0.12 0.08 7.96 -51.93 -0.41 -0.34 16 29 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 30 H -0.26 0.06 7.00 56.52 0.40 0.46 16 31 H 0.18 -0.74 6.27 -52.49 -0.33 -1.07 16 32 H 0.42 -2.02 8.96 -40.82 -0.37 -2.38 16 33 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 34 H 0.13 -0.37 6.36 -52.49 -0.33 -0.70 16 35 H 0.40 -0.75 5.66 -40.82 -0.23 -0.98 16 36 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 40 H 0.06 -0.12 8.14 -51.94 -0.42 -0.55 16 41 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 42 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 44 H 0.38 -1.33 9.12 45.56 0.42 -0.91 16 45 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 46 H 0.07 0.05 7.82 -51.93 -0.41 -0.35 16 47 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 48 H 0.06 -0.11 7.18 -51.93 -0.37 -0.48 16 49 H 0.14 0.67 7.64 -52.49 -0.40 0.27 16 LS Contribution 392.21 15.07 5.91 5.91 Total: 0.00 -10.24 392.21 -11.82 -22.06 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -6.74 Total: -12.99 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.53 Total: -2.30 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.39 Total: 0.14 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.83 Total: -6.70 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.24 Total: -6.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -10.24 -11.82 -22.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.888 kcal (2) G-P(sol) polarization free energy of solvation -10.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds