Wall clock time and date at job start Tue Mar 9 2021 13:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38580 * 120.32694 * 65.00252 * 4 2 1 6 6 C 1.38621 * 118.49101 * 179.97438 * 5 4 2 7 7 C 1.39278 * 119.06039 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72146 * 179.97438 * 7 6 5 9 9 O 1.21519 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99923 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00353 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47410 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.46955 * 304.99952 * 12 11 10 14 14 C 1.53002 * 109.46937 * 65.00051 * 12 11 10 15 15 C 1.53005 * 109.47071 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46757 * 299.99502 * 15 14 12 17 17 H 1.08999 * 109.47011 * 300.00183 * 16 15 14 18 18 C 1.53001 * 109.47111 * 180.02562 * 16 15 14 19 19 O 1.42897 * 109.46793 * 65.00095 * 18 16 15 20 20 C 1.53003 * 109.46998 * 59.99853 * 16 15 14 21 21 C 1.52994 * 109.47586 * 300.00046 * 20 16 15 22 22 N 1.32741 * 120.55068 * 359.97438 * 7 6 5 23 23 C 1.31493 * 121.64839 * 359.73185 * 22 7 6 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 26 26 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.08008 * 120.75521 * 359.95490 * 5 4 2 29 29 H 1.08001 * 120.47365 * 179.97438 * 6 5 4 30 30 H 0.97006 * 119.99713 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46876 * 299.99515 * 11 10 8 32 32 H 1.08994 * 109.47231 * 59.99189 * 11 10 8 33 33 H 1.09007 * 109.46668 * 299.99693 * 14 12 11 34 34 H 1.08999 * 109.47460 * 59.99700 * 14 12 11 35 35 H 1.08996 * 109.46937 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46772 * 59.99480 * 15 14 12 37 37 H 1.09000 * 109.46535 * 185.00047 * 18 16 15 38 38 H 1.09000 * 109.46764 * 304.99621 * 18 16 15 39 39 H 0.96704 * 113.99583 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47155 * 179.97438 * 20 16 15 41 41 H 1.08999 * 109.46970 * 60.00305 * 20 16 15 42 42 H 1.08999 * 109.47178 * 300.00132 * 21 20 16 43 43 H 1.08993 * 109.47533 * 179.97438 * 21 20 16 44 44 H 1.07995 * 119.55534 * 180.28816 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6878 -2.0634 1.4058 6 6 2.1676 -2.6786 2.5516 7 6 2.8734 -1.9196 3.4821 8 6 3.3924 -2.5622 4.7122 9 8 3.2012 -3.7465 4.9061 10 7 4.0765 -1.8332 5.6160 11 6 4.5901 -2.4685 6.8320 12 6 5.3230 -1.4277 7.6808 13 1 6.0966 -0.9489 7.0806 14 6 4.3271 -0.3721 8.1654 15 6 5.0600 0.6692 9.0137 16 6 5.7031 -0.0172 10.2204 17 1 4.9296 -0.4960 10.8209 18 6 6.4355 1.0240 11.0691 19 8 5.4885 1.9432 11.6172 20 6 6.6989 -1.0730 9.7358 21 6 5.9660 -2.1141 8.8875 22 7 3.0849 -0.6255 3.2760 23 6 2.6460 -0.0181 2.1955 24 1 -0.3934 0.4418 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4678 -1.2086 28 1 1.1365 -2.6256 0.6666 29 1 1.9960 -3.7313 2.7209 30 1 4.2294 -0.8879 5.4610 31 1 3.7600 -2.8843 7.4031 32 1 5.2805 -3.2671 6.5608 33 1 3.8693 0.1173 7.3056 34 1 3.5534 -0.8508 8.7656 35 1 4.3506 1.4214 9.3585 36 1 5.8335 1.1479 8.4131 37 1 6.9671 0.5240 11.8787 38 1 7.1479 1.5646 10.4459 39 1 5.8835 2.6332 12.1677 40 1 7.1573 -1.5617 10.5955 41 1 7.4724 -0.5942 9.1353 42 1 5.1925 -2.5928 9.4880 43 1 6.6755 -2.8659 8.5420 44 1 2.8413 1.0353 2.0600 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:28 Heat of formation + Delta-G solvation = -101.073613 kcal Electronic energy + Delta-G solvation = -24871.847688 eV Core-core repulsion = 21175.626654 eV Total energy + Delta-G solvation = -3696.221033 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91000 -40.61919 -39.81428 -37.88242 -37.61287 -35.89855 -33.94662 -33.06580 -32.58001 -31.69144 -28.73566 -27.30434 -25.09074 -24.84051 -23.86822 -23.35410 -21.81257 -21.66542 -20.75427 -19.31018 -18.59719 -18.18905 -17.78026 -16.86057 -16.69972 -16.59244 -16.43062 -16.09994 -15.96755 -15.79165 -15.28985 -15.13364 -14.79996 -14.71339 -14.48581 -14.35192 -14.22288 -13.89747 -13.56856 -13.44657 -13.08317 -12.82725 -12.55616 -12.50984 -12.18697 -12.03302 -11.90284 -11.56003 -11.39386 -11.10657 -11.07647 -11.05872 -10.76903 -10.68867 -10.57586 -10.38416 -10.10112 -5.00506 -0.61695 0.06237 1.24828 1.51845 1.64364 1.95366 1.97873 2.64856 2.93562 3.32176 3.42523 3.51405 3.62982 3.65219 3.74495 3.76284 3.79303 3.93341 4.10269 4.11612 4.18902 4.31666 4.40358 4.45701 4.49166 4.51994 4.56608 4.60045 4.66456 4.70190 4.76480 4.78556 4.88152 4.97110 4.97688 5.09776 5.17137 5.21262 5.25029 5.29268 5.35186 5.37771 5.47102 5.57010 6.25007 6.59116 6.71296 6.90433 7.01486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.069 4.069 3 Si 0.774 3.226 4 C -0.143 4.143 5 C -0.053 4.053 6 C -0.117 4.117 7 C 0.064 3.936 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.697 5.697 11 C 0.122 3.878 12 C -0.088 4.088 13 H 0.088 0.912 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.090 4.090 17 H 0.062 0.938 18 C 0.076 3.924 19 O -0.596 6.596 20 C -0.107 4.107 21 C -0.110 4.110 22 N -0.459 5.459 23 C 0.103 3.897 24 H 0.397 0.603 25 H 0.119 0.881 26 H -0.279 1.279 27 H -0.296 1.296 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.419 0.581 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.395 0.605 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 4.993 1.124 5.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.180 4.180 3 Si 0.679 3.321 4 C -0.145 4.145 5 C -0.079 4.079 6 C -0.137 4.137 7 C -0.073 4.073 8 C 0.351 3.649 9 O -0.448 6.448 10 N -0.348 5.348 11 C -0.001 4.001 12 C -0.107 4.107 13 H 0.106 0.894 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.108 4.108 17 H 0.080 0.920 18 C -0.002 4.002 19 O -0.404 6.404 20 C -0.145 4.145 21 C -0.148 4.148 22 N -0.171 5.171 23 C -0.056 4.056 24 H 0.248 0.752 25 H 0.136 0.864 26 H -0.205 1.205 27 H -0.223 1.223 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.257 0.743 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.244 0.756 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.535 4.498 0.687 5.208 hybrid contribution -0.009 -0.541 -0.551 0.772 sum 2.526 3.957 0.136 4.696 Atomic orbital electron populations 1.86513 1.16660 1.82119 1.50579 1.25174 0.85619 1.10998 0.96180 0.93794 0.78161 0.74579 0.85609 1.21778 0.98771 0.95584 0.98400 1.21736 0.95580 0.94216 0.96381 1.22279 0.95686 1.02276 0.93507 1.21065 0.99608 0.90901 0.95751 1.18120 0.78234 0.85626 0.82929 1.90790 1.59729 1.16421 1.77903 1.45830 1.54200 1.14296 1.20511 1.21540 0.98159 0.96008 0.84424 1.21347 0.97770 0.95196 0.96343 0.89407 1.21592 0.97566 0.96272 0.99591 1.21450 0.99688 0.97390 0.95718 1.21183 0.98161 0.95337 0.96161 0.91953 1.22314 0.90779 0.90770 0.96319 1.86435 1.38193 1.45147 1.70647 1.21462 0.97408 0.95704 0.99904 1.21473 0.99919 0.97851 0.95542 1.67496 1.18592 1.08955 1.22016 1.23029 0.93578 1.00785 0.88254 0.75224 0.86377 1.20542 1.22345 0.82213 0.83432 0.74286 0.91970 0.91526 0.91452 0.92554 0.92588 0.91415 0.93040 0.92754 0.75579 0.91011 0.90858 0.91823 0.90649 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.04 12.84 -148.98 -1.91 0.12 16 2 C -0.07 0.33 2.82 71.24 0.20 0.53 16 3 Si 0.77 -4.72 29.83 68.60 2.05 -2.68 16 4 C -0.14 0.42 5.37 -19.69 -0.11 0.31 16 5 C -0.05 0.05 9.83 22.44 0.22 0.27 16 6 C -0.12 -0.35 9.63 22.61 0.22 -0.13 16 7 C 0.06 0.31 6.75 41.90 0.28 0.59 16 8 C 0.57 4.43 7.81 86.88 0.68 5.11 16 9 O -0.57 -8.28 16.32 -3.78 -0.06 -8.34 16 10 N -0.70 -1.70 5.27 -465.67 -2.46 -4.16 16 11 C 0.12 0.12 5.07 86.38 0.44 0.56 16 12 C -0.09 0.27 2.22 -10.79 -0.02 0.24 16 13 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 14 C -0.11 0.21 5.08 30.60 0.16 0.36 16 15 C -0.10 0.11 5.10 30.60 0.16 0.26 16 16 C -0.09 0.11 2.43 -10.79 -0.03 0.08 16 17 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 18 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 19 O -0.60 -0.66 13.19 -148.98 -1.97 -2.63 16 20 C -0.11 0.43 5.20 30.59 0.16 0.59 16 21 C -0.11 0.38 5.20 30.59 0.16 0.54 16 22 N -0.46 -0.78 9.54 -184.91 -1.76 -2.55 16 23 C 0.10 -0.27 9.84 84.83 0.83 0.56 16 24 H 0.40 -4.58 8.70 -74.06 -0.64 -5.22 16 25 H 0.12 -0.50 7.96 -2.39 -0.02 -0.52 16 26 H -0.28 0.43 7.11 99.48 0.71 1.14 16 27 H -0.30 -0.57 7.11 99.48 0.71 0.14 16 28 H 0.16 -0.63 8.06 -2.91 -0.02 -0.66 16 29 H 0.15 0.49 7.64 -2.91 -0.02 0.47 16 30 H 0.42 -0.32 6.98 -92.70 -0.65 -0.97 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.07 -0.16 7.18 -2.38 -0.02 -0.17 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.06 0.13 7.82 -2.39 -0.02 0.11 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 37 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.39 -2.80 9.12 -74.05 -0.68 -3.48 16 40 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.19 -1.61 4.92 -2.91 -0.01 -1.63 16 Total: 0.00 -19.41 356.08 -3.21 -22.61 By element: Atomic # 1 Polarization: -11.69 SS G_CDS: -0.90 Total: -12.59 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 3.81 Total: 10.22 kcal Atomic # 7 Polarization: -2.49 SS G_CDS: -4.22 Total: -6.71 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -3.94 Total: -10.85 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.05 Total: -2.68 kcal Total: -19.41 -3.21 -22.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.462 kcal (2) G-P(sol) polarization free energy of solvation -19.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds