Wall clock time and date at job start Tue Mar 9 2021 13:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.46812 * 2 1 4 4 C 1.50700 * 109.47409 * 240.00164 * 2 1 3 5 5 C 1.34176 * 125.43798 * 300.01329 * 4 2 1 6 6 C 1.47016 * 105.95418 * 179.97438 * 5 4 2 7 7 C 1.47376 * 127.19272 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99656 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46758 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47019 * 305.00262 * 11 10 9 13 13 C 1.53001 * 109.47052 * 65.00386 * 11 10 9 14 14 C 1.52996 * 109.46959 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47528 * 299.99725 * 14 13 11 16 16 H 1.08993 * 109.46975 * 300.00517 * 15 14 13 17 17 C 1.52996 * 109.47528 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.46909 * 65.00248 * 17 15 14 19 19 C 1.53000 * 109.46415 * 60.00069 * 15 14 13 20 20 C 1.52998 * 109.46814 * 185.00425 * 11 10 9 21 21 C 1.36414 * 105.61615 * 0.02562 * 6 5 4 22 22 O 1.33654 * 108.39828 * 359.97438 * 21 6 5 23 23 H 0.96699 * 114.00232 * 59.99941 * 1 2 3 24 24 H 1.08997 * 109.47483 * 119.99710 * 2 1 3 25 25 H 1.48497 * 110.00144 * 298.68038 * 3 2 1 26 26 H 1.48505 * 110.00157 * 60.00367 * 3 2 1 27 27 H 1.07997 * 127.01841 * 359.94263 * 5 4 2 28 28 H 0.96998 * 120.00207 * 0.02562 * 9 7 6 29 29 H 1.08997 * 109.47250 * 299.99916 * 10 9 7 30 30 H 1.09002 * 109.47040 * 60.00509 * 10 9 7 31 31 H 1.09001 * 109.46953 * 299.99635 * 13 11 10 32 32 H 1.09003 * 109.47309 * 60.00054 * 13 11 10 33 33 H 1.08999 * 109.46946 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47266 * 59.99652 * 14 13 11 35 35 H 1.08997 * 109.47139 * 185.00282 * 17 15 14 36 36 H 1.09007 * 109.47024 * 305.00305 * 17 15 14 37 37 H 0.96700 * 113.99826 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47056 * 180.02562 * 19 15 14 39 39 H 1.09000 * 109.47520 * 60.00599 * 19 15 14 40 40 H 1.09003 * 109.47195 * 299.99730 * 20 11 10 41 41 H 1.08999 * 109.47397 * 60.00121 * 20 11 10 42 42 H 1.08007 * 125.80379 * 180.26684 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6752 -1.9880 -1.5503 6 6 2.3680 -2.2325 -2.8237 7 6 2.3961 -3.4874 -3.5960 8 8 1.8003 -4.4660 -3.1880 9 7 3.0821 -3.5506 -4.7544 10 6 3.1104 -4.7983 -5.5217 11 6 3.9525 -4.6016 -6.7840 12 1 3.5676 -3.7526 -7.3488 13 6 5.4069 -4.3354 -6.3904 14 6 6.2490 -4.1394 -7.6526 15 6 6.1769 -5.4012 -8.5150 16 1 6.5616 -6.2500 -7.9498 17 6 7.0196 -5.2054 -9.7769 18 8 8.3956 -5.0730 -9.4150 19 6 4.7225 -5.6673 -8.9085 20 6 3.8803 -5.8631 -7.6468 21 6 2.9794 -1.0551 -3.1411 22 8 2.7063 -0.1659 -2.1814 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5138 0.8900 25 1 1.5878 2.4586 -1.2242 26 1 1.5614 2.4680 1.2086 27 1 1.0818 -2.6929 -0.9870 28 1 3.5576 -2.7703 -5.0796 29 1 3.5482 -5.5894 -4.9130 30 1 2.0942 -5.0756 -5.8021 31 1 5.4582 -3.4367 -5.7758 32 1 5.7917 -5.1845 -5.8256 33 1 7.2850 -3.9492 -7.3722 34 1 5.8643 -3.2905 -8.2179 35 1 6.8976 -6.0675 -10.4326 36 1 6.6922 -4.3046 -10.2963 37 1 8.9896 -4.9452 -10.1672 38 1 4.6710 -6.5665 -9.5225 39 1 4.3378 -4.8185 -9.4738 40 1 4.2652 -6.7122 -7.0819 41 1 2.8442 -6.0528 -7.9271 42 1 3.5781 -0.8712 -4.0210 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:05 Heat of formation + Delta-G solvation = -122.370898 kcal Electronic energy + Delta-G solvation = -23642.146499 eV Core-core repulsion = 19975.509424 eV Total energy + Delta-G solvation = -3666.637075 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72314 -40.85327 -39.84047 -38.16978 -37.61237 -35.85039 -34.07227 -32.85918 -31.72825 -31.65210 -28.33367 -26.66178 -25.37075 -24.12769 -23.45053 -22.31403 -21.68416 -21.05758 -20.57556 -19.40485 -18.19916 -17.90334 -17.57942 -17.38557 -16.89420 -16.62201 -16.21085 -16.02622 -15.78329 -15.73119 -15.12947 -14.92132 -14.78600 -14.51803 -14.22277 -13.99326 -13.95360 -13.61297 -13.43392 -13.08237 -12.95173 -12.82522 -12.50504 -12.14385 -12.03009 -11.89999 -11.40034 -11.35680 -11.07283 -11.06034 -10.99319 -10.77845 -10.76383 -10.21299 -9.78664 -4.90874 0.25611 0.80350 1.18996 1.53149 1.75155 1.95871 2.06088 2.23716 3.20257 3.31653 3.47921 3.55322 3.63787 3.74299 3.76867 3.97192 4.10621 4.17954 4.30444 4.35011 4.43131 4.46099 4.50602 4.51198 4.51970 4.60311 4.67572 4.70387 4.77561 4.82330 4.89202 4.97407 5.10207 5.11984 5.16750 5.22595 5.25271 5.30181 5.37219 5.47593 5.57526 5.82016 6.34392 6.45125 6.89707 7.12597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.047 4.047 3 Si 0.794 3.206 4 C -0.050 4.050 5 C -0.152 4.152 6 C -0.270 4.270 7 C 0.584 3.416 8 O -0.590 6.590 9 N -0.707 5.707 10 C 0.126 3.874 11 C -0.086 4.086 12 H 0.094 0.906 13 C -0.113 4.113 14 C -0.105 4.105 15 C -0.091 4.091 16 H 0.059 0.941 17 C 0.075 3.925 18 O -0.596 6.596 19 C -0.107 4.107 20 C -0.112 4.112 21 C 0.067 3.933 22 O -0.163 6.163 23 H 0.391 0.609 24 H 0.147 0.853 25 H -0.286 1.286 26 H -0.288 1.288 27 H 0.143 0.857 28 H 0.415 0.585 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 4.671 -5.858 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.696 3.304 4 C -0.098 4.098 5 C -0.172 4.172 6 C -0.274 4.274 7 C 0.373 3.627 8 O -0.471 6.471 9 N -0.360 5.360 10 C 0.002 3.998 11 C -0.105 4.105 12 H 0.113 0.887 13 C -0.151 4.151 14 C -0.143 4.143 15 C -0.110 4.110 16 H 0.078 0.922 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.004 4.004 22 O -0.059 6.059 23 H 0.241 0.759 24 H 0.165 0.835 25 H -0.212 1.212 26 H -0.215 1.215 27 H 0.160 0.840 28 H 0.253 0.747 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 4.179 4.700 -4.430 7.693 hybrid contribution -0.891 -0.578 -1.141 1.559 sum 3.288 4.122 -5.572 7.671 Atomic orbital electron populations 1.86649 1.17504 1.80609 1.50026 1.24722 0.83478 1.13395 0.93861 0.93426 0.89804 0.70118 0.77014 1.22700 0.99549 0.93458 0.94079 1.22550 1.02261 0.96163 0.96270 1.21473 1.09971 0.95884 1.00080 1.17554 0.78035 0.86483 0.80670 1.90791 1.46708 1.38917 1.70710 1.45679 1.52319 1.15943 1.22021 1.21434 1.00288 0.85750 0.92327 1.21345 0.94989 0.99979 0.94153 0.88748 1.21611 0.93842 1.02088 0.97524 1.21459 0.99732 0.97160 0.95930 1.21187 0.95010 0.98902 0.95855 0.92232 1.22317 0.81288 1.00192 0.96411 1.86433 1.18489 1.96279 1.39250 1.21450 0.92992 1.02581 0.97407 1.21477 1.00646 0.96929 0.95975 1.25304 0.97209 0.85226 0.92625 1.83718 1.54225 1.40060 1.27853 0.75929 0.83508 1.21174 1.21515 0.83951 0.74674 0.92691 0.92171 0.90555 0.92917 0.92566 0.91014 0.93264 0.92583 0.75576 0.91330 0.90610 0.92218 0.90865 0.72135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.11 12.86 -148.98 -1.92 -3.03 16 2 C -0.05 0.06 2.98 71.24 0.21 0.27 16 3 Si 0.79 -2.71 32.08 68.60 2.20 -0.50 16 4 C -0.05 -0.04 6.20 24.76 0.15 0.11 16 5 C -0.15 -0.87 10.88 23.65 0.26 -0.62 16 6 C -0.27 -0.80 6.31 -19.00 -0.12 -0.92 16 7 C 0.58 4.00 7.81 86.65 0.68 4.67 16 8 O -0.59 -10.31 16.98 -4.08 -0.07 -10.37 16 9 N -0.71 1.18 5.28 -466.39 -2.46 -1.28 16 10 C 0.13 -0.07 5.06 86.38 0.44 0.37 16 11 C -0.09 0.48 2.23 -10.79 -0.02 0.45 16 12 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 13 C -0.11 0.56 5.08 30.59 0.16 0.71 16 14 C -0.11 0.37 5.10 30.59 0.16 0.53 16 15 C -0.09 0.22 2.43 -10.79 -0.03 0.20 16 16 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 17 C 0.08 -0.22 6.43 71.98 0.46 0.25 16 18 O -0.60 -0.10 13.20 -148.98 -1.97 -2.06 16 19 C -0.11 0.54 5.20 30.58 0.16 0.70 16 20 C -0.11 0.50 5.20 30.58 0.16 0.66 16 21 C 0.07 -0.37 11.61 67.39 0.78 0.42 16 22 O -0.16 0.40 8.89 4.47 0.04 0.44 16 23 H 0.39 -1.47 8.70 -74.06 -0.64 -2.11 16 24 H 0.15 -0.55 7.96 -2.39 -0.02 -0.57 16 25 H -0.29 -0.41 7.11 99.48 0.71 0.29 16 26 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 27 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.42 -3.97 6.62 -92.71 -0.61 -4.58 16 29 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.08 -0.60 7.18 -2.39 -0.02 -0.61 16 32 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 0.00 7.82 -2.39 -0.02 -0.02 16 34 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.39 -3.13 9.12 -74.06 -0.68 -3.80 16 38 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.26 -4.42 7.47 -2.91 -0.02 -4.44 16 Total: 0.00 -25.13 346.66 -1.58 -26.72 By element: Atomic # 1 Polarization: -16.85 SS G_CDS: -0.85 Total: -17.71 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 3.44 Total: 7.80 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.46 Total: -1.28 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -3.91 Total: -15.02 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.20 Total: -0.50 kcal Total: -25.13 -1.58 -26.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.655 kcal (2) G-P(sol) polarization free energy of solvation -25.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds