Wall clock time and date at job start Tue Mar 9 2021 13:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47367 * 330.00153 * 5 4 3 7 7 C 1.53009 * 109.46942 * 90.00522 * 5 4 3 8 8 C 1.52999 * 109.47040 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47197 * 299.99589 * 8 7 5 10 10 H 1.08995 * 109.46964 * 300.00228 * 9 8 7 11 11 N 1.46495 * 109.47035 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99777 * 85.00306 * 11 9 8 13 13 O 1.21616 * 120.00019 * 0.02562 * 12 11 9 14 14 C 1.47378 * 120.00188 * 179.97438 * 12 11 9 15 15 C 1.36413 * 127.19796 * 179.70780 * 14 12 11 16 16 C 1.50706 * 125.79547 * 0.02562 * 15 14 12 17 17 O 1.42901 * 109.46924 * 90.00111 * 16 15 14 18 18 C 1.35903 * 116.99638 * 179.97438 * 17 16 15 19 19 C 1.38729 * 120.05579 * 359.72438 * 18 17 16 20 20 C 1.38148 * 119.93966 * 179.74137 * 19 18 17 21 21 C 1.38265 * 120.05836 * 0.51404 * 20 19 18 22 22 C 1.50701 * 119.94822 * 179.74305 * 21 20 19 23 23 O 1.42901 * 109.46975 * 245.01962 * 22 21 20 24 24 Si 1.86297 * 109.46838 * 5.01761 * 22 21 20 25 25 C 1.38266 * 120.11234 * 359.76259 * 21 20 19 26 26 C 1.38152 * 120.05260 * 359.97438 * 25 21 20 27 27 O 1.33653 * 108.40199 * 179.84056 * 15 14 12 28 28 C 1.34214 * 110.90560 * 0.44943 * 27 15 14 29 29 C 1.34183 * 109.12488 * 359.72553 * 28 27 15 30 30 C 1.53009 * 109.46790 * 60.00258 * 9 8 7 31 31 C 1.52999 * 109.47279 * 210.00101 * 5 4 3 32 32 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 33 33 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 34 34 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 35 35 H 1.08996 * 109.46645 * 299.99712 * 7 5 4 36 36 H 1.08999 * 109.46819 * 60.00114 * 7 5 4 37 37 H 1.08997 * 109.46841 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47165 * 59.99855 * 8 7 5 39 39 H 0.97001 * 120.00534 * 264.99656 * 11 9 8 40 40 H 1.09003 * 109.47147 * 209.99882 * 16 15 14 41 41 H 1.09003 * 109.47450 * 329.99757 * 16 15 14 42 42 H 1.07996 * 120.03363 * 359.97438 * 19 18 17 43 43 H 1.07998 * 119.97119 * 180.23163 * 20 19 18 44 44 H 1.09003 * 109.47259 * 125.01797 * 22 21 20 45 45 H 0.96702 * 113.99579 * 179.97438 * 23 22 21 46 46 H 1.48497 * 110.00580 * 300.00268 * 24 22 21 47 47 H 1.48511 * 110.00075 * 61.32159 * 24 22 21 48 48 H 1.08000 * 119.97440 * 179.97438 * 25 21 20 49 49 H 1.07995 * 120.02623 * 180.02562 * 26 25 21 50 50 H 1.08005 * 125.43827 * 179.72935 * 28 27 15 51 51 H 1.07995 * 127.01942 * 180.02562 * 29 28 27 52 52 H 1.08996 * 109.46645 * 180.02562 * 30 9 8 53 53 H 1.08991 * 109.46950 * 60.00070 * 30 9 8 54 54 H 1.09003 * 109.47280 * 300.00266 * 31 5 4 55 55 H 1.08997 * 109.46986 * 60.00452 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9787 0.7833 -0.1266 7 6 5.0558 -0.1290 -2.0767 8 6 6.5810 -0.0502 -2.1680 9 6 6.9904 1.3313 -2.6828 10 1 6.5584 1.4937 -3.6702 11 7 8.4509 1.4069 -2.7697 12 6 9.0850 0.9521 -3.8685 13 8 8.4448 0.4794 -4.7882 14 6 10.5542 1.0287 -3.9563 15 6 11.3416 0.6105 -4.9887 16 6 10.8561 -0.0233 -6.2669 17 8 10.6059 0.9946 -7.2382 18 6 10.1596 0.5888 -8.4560 19 6 9.9720 -0.7615 -8.7128 20 6 9.5131 -1.1709 -9.9498 21 6 9.2510 -0.2369 -10.9351 22 6 8.7561 -0.6867 -12.2856 23 8 9.7358 -0.3779 -13.2790 24 14 8.4589 -2.5256 -12.2571 25 6 9.4426 1.1091 -10.6836 26 6 9.8962 1.5240 -9.4463 27 8 12.6164 0.8621 -4.6758 28 6 12.7090 1.4270 -3.4618 29 6 11.4779 1.5658 -2.9464 30 6 6.4810 2.4058 -1.7200 31 6 4.9552 2.3270 -1.6290 32 1 -1.0502 -0.0001 0.0004 33 1 3.0092 0.3479 0.9672 34 1 3.0098 -1.0104 -0.1831 35 1 4.7646 -1.1131 -1.7097 36 1 4.6234 0.0334 -3.0640 37 1 6.9440 -0.8159 -2.8536 38 1 7.0131 -0.2127 -1.1806 39 1 8.9615 1.7844 -2.0364 40 1 11.6162 -0.7072 -6.6449 41 1 9.9359 -0.5744 -6.0726 42 1 10.1809 -1.4918 -7.9451 43 1 9.3634 -2.2217 -10.1490 44 1 7.8248 -0.1717 -12.5213 45 1 9.4837 -0.6404 -14.1749 46 1 9.7211 -3.2394 -11.9368 47 1 7.4187 -2.8565 -11.2500 48 1 9.2376 1.8367 -11.4549 49 1 10.0453 2.5755 -9.2502 50 1 13.6278 1.7226 -2.9772 51 1 11.2187 1.9866 -1.9862 52 1 6.7722 3.3899 -2.0869 53 1 6.9130 2.2432 -0.7327 54 1 4.5228 2.4893 -2.6163 55 1 4.5923 3.0925 -0.9431 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:02 Heat of formation + Delta-G solvation = -44.969716 kcal Electronic energy + Delta-G solvation = -38314.721790 eV Core-core repulsion = 33252.326809 eV Total energy + Delta-G solvation = -5062.394980 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.77487 -41.43450 -41.14601 -39.95756 -39.24977 -37.93637 -37.26696 -35.18886 -34.25868 -33.78181 -32.98656 -32.16084 -31.92698 -31.57051 -30.05047 -28.09289 -27.59171 -26.20079 -24.93169 -24.00466 -23.85369 -23.12814 -22.37124 -21.90084 -21.51357 -20.75935 -19.66407 -19.45013 -19.11581 -18.37639 -17.94281 -17.75066 -17.41599 -17.32725 -17.02458 -16.88848 -16.78365 -16.62007 -16.31304 -16.00762 -15.89048 -15.71951 -15.45047 -15.04910 -14.96076 -14.85405 -14.57821 -14.39033 -14.32264 -14.02992 -14.00017 -13.87016 -13.77793 -13.59336 -13.50947 -13.28487 -13.15865 -12.70323 -12.56322 -12.41288 -12.28131 -12.21998 -12.07378 -11.91798 -11.89630 -11.74230 -11.37393 -11.32951 -11.17855 -11.01349 -10.48128 -10.31152 -10.22703 -10.18793 -9.88224 -9.38709 -4.97975 -0.10641 0.07223 0.12770 0.99776 1.28692 1.43425 1.46940 1.61657 1.76753 1.94699 1.96810 2.07466 2.37476 2.45825 2.85346 3.25482 3.39546 3.49218 3.50563 3.51379 3.58216 3.65410 3.68008 3.68686 3.81214 3.90709 3.97512 3.99801 4.04513 4.10569 4.11781 4.19598 4.26735 4.27291 4.32670 4.37702 4.39708 4.40233 4.43777 4.50903 4.54540 4.62571 4.75357 4.76143 4.76723 4.88306 4.98268 4.98642 4.99385 5.05230 5.06227 5.09531 5.20387 5.22466 5.24785 5.30958 5.41303 5.51827 5.83801 6.09484 6.16812 6.41452 6.54849 6.91954 7.07583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.090 3.910 6 H 0.090 0.910 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.144 3.856 10 H 0.062 0.938 11 N -0.701 5.701 12 C 0.583 3.417 13 O -0.574 6.574 14 C -0.220 4.220 15 C 0.037 3.963 16 C 0.134 3.866 17 O -0.317 6.317 18 C 0.125 3.875 19 C -0.207 4.207 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.072 4.072 23 O -0.563 6.563 24 Si 0.773 3.227 25 C -0.053 4.053 26 C -0.156 4.156 27 O -0.178 6.178 28 C -0.011 4.011 29 C -0.194 4.194 30 C -0.112 4.112 31 C -0.112 4.112 32 H 0.248 0.752 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.403 0.597 46 H -0.296 1.296 47 H -0.293 1.293 48 H 0.154 0.846 49 H 0.144 0.856 50 H 0.254 0.746 51 H 0.196 0.804 52 H 0.084 0.916 53 H 0.098 0.902 54 H 0.058 0.942 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 0.635 4.456 4.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.033 3.967 6 H 0.108 0.892 7 C -0.175 4.175 8 C -0.157 4.157 9 C 0.040 3.960 10 H 0.081 0.919 11 N -0.352 5.352 12 C 0.371 3.629 13 O -0.455 6.455 14 C -0.225 4.225 15 C -0.016 4.016 16 C 0.060 3.940 17 O -0.232 6.232 18 C 0.080 3.920 19 C -0.226 4.226 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.182 4.182 23 O -0.373 6.373 24 Si 0.680 3.320 25 C -0.071 4.071 26 C -0.175 4.175 27 O -0.074 6.074 28 C -0.077 4.077 29 C -0.212 4.212 30 C -0.149 4.149 31 C -0.150 4.150 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.255 0.745 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.255 0.745 46 H -0.224 1.224 47 H -0.220 1.220 48 H 0.171 0.829 49 H 0.162 0.838 50 H 0.270 0.730 51 H 0.213 0.787 52 H 0.102 0.898 53 H 0.117 0.883 54 H 0.077 0.923 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.283 0.055 4.577 4.754 hybrid contribution 0.083 0.078 0.846 0.854 sum 1.366 0.133 5.424 5.594 Atomic orbital electron populations 1.25864 0.96990 0.98271 0.97671 1.23258 0.95181 1.02502 1.02769 1.19322 0.84111 0.95233 0.92107 1.87969 1.22632 1.66153 1.55249 1.22298 0.79456 0.95498 0.99459 0.89242 1.21961 0.95232 0.99866 1.00396 1.21787 0.95138 0.96502 1.02249 1.21046 0.78933 0.95990 1.00051 0.91926 1.45680 1.07751 1.62530 1.19231 1.17457 0.85946 0.77202 0.82260 1.90788 1.68056 1.47191 1.39461 1.21404 0.93905 1.09228 0.97987 1.21943 0.81738 1.01804 0.96147 1.21115 1.01800 0.88618 0.82468 1.86054 1.80765 1.35953 1.20397 1.19136 0.94890 0.93157 0.84781 1.21307 1.07073 0.94948 0.99242 1.20845 0.98410 0.98697 0.93657 1.19667 1.03803 0.94093 0.95336 1.24725 0.94198 1.12630 0.86675 1.86446 1.44366 1.85916 1.20602 0.94537 0.76849 0.73470 0.87156 1.21065 0.94922 0.95494 0.95570 1.20748 1.04468 0.99968 0.92282 1.83793 1.27187 1.61910 1.34514 1.24967 1.02056 0.98104 0.82563 1.23276 0.90830 1.05497 1.01627 1.21716 0.94560 0.98391 1.00266 1.21520 0.95203 0.95926 1.02354 0.73552 0.88865 0.89766 0.90863 0.92791 0.93236 0.89372 0.74538 0.88640 0.87777 0.83955 0.86056 0.88685 0.74548 1.22391 1.22041 0.82855 0.83782 0.73039 0.78662 0.89764 0.88334 0.92307 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 19.25 74.32 1.43 0.90 16 2 C -0.24 -1.33 13.73 31.13 0.43 -0.90 16 3 C 0.17 0.22 6.22 70.18 0.44 0.65 16 4 O -0.40 -1.86 9.95 -148.98 -1.48 -3.34 16 5 C 0.09 -0.10 2.61 30.60 0.08 -0.02 16 6 H 0.09 -0.52 7.79 -2.39 -0.02 -0.54 16 7 C -0.14 -0.09 5.54 30.60 0.17 0.08 16 8 C -0.12 0.02 5.49 30.59 0.17 0.19 16 9 C 0.14 0.01 2.45 45.00 0.11 0.12 16 10 H 0.06 0.42 7.58 -2.39 -0.02 0.40 16 11 N -0.70 0.44 5.07 -445.84 -2.26 -1.82 16 12 C 0.58 4.13 7.78 86.65 0.67 4.81 16 13 O -0.57 -8.67 14.51 -4.08 -0.06 -8.73 16 14 C -0.22 -1.02 6.31 -18.99 -0.12 -1.14 16 15 C 0.04 0.26 7.00 25.26 0.18 0.43 16 16 C 0.13 1.09 4.74 71.24 0.34 1.43 16 17 O -0.32 -3.94 10.12 -92.46 -0.94 -4.88 16 18 C 0.13 1.47 6.69 22.51 0.15 1.62 16 19 C -0.21 -2.12 9.04 22.37 0.20 -1.92 16 20 C -0.10 -1.00 8.66 22.25 0.19 -0.80 16 21 C -0.13 -1.09 5.38 -19.85 -0.11 -1.20 16 22 C -0.07 -0.15 2.79 71.24 0.20 0.05 16 23 O -0.56 -0.92 12.81 -148.98 -1.91 -2.83 16 24 Si 0.77 0.45 29.85 68.60 2.05 2.50 16 25 C -0.05 -0.41 9.68 22.26 0.22 -0.19 16 26 C -0.16 -1.50 9.99 22.37 0.22 -1.28 16 27 O -0.18 -0.71 10.52 4.47 0.05 -0.66 16 28 C -0.01 0.04 12.03 66.89 0.80 0.85 16 29 C -0.19 0.70 10.60 23.65 0.25 0.95 16 30 C -0.11 0.61 5.39 30.61 0.17 0.77 16 31 C -0.11 0.23 5.58 30.61 0.17 0.40 16 32 H 0.25 -1.12 7.80 -4.41 -0.03 -1.16 16 33 H 0.09 -0.30 8.08 -2.39 -0.02 -0.32 16 34 H 0.08 -0.14 7.87 -2.39 -0.02 -0.16 16 35 H 0.07 -0.02 7.87 -2.39 -0.02 -0.04 16 36 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.42 -3.13 7.77 -92.71 -0.72 -3.85 16 40 H 0.10 0.39 7.65 -2.39 -0.02 0.37 16 41 H 0.10 1.01 6.02 -2.39 -0.01 0.99 16 42 H 0.14 0.92 6.30 -2.91 -0.02 0.90 16 43 H 0.12 1.05 4.86 -2.91 -0.01 1.04 16 44 H 0.10 -0.22 7.96 -2.39 -0.02 -0.24 16 45 H 0.40 -3.73 8.74 -74.06 -0.65 -4.38 16 46 H -0.30 -2.31 7.05 99.48 0.70 -1.61 16 47 H -0.29 -1.96 7.11 99.48 0.71 -1.26 16 48 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 49 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 50 H 0.25 -3.34 8.06 -2.91 -0.02 -3.37 16 51 H 0.20 -2.26 7.74 -2.91 -0.02 -2.28 16 52 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 53 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 54 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 55 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: 0.00 -31.10 459.14 1.40 -29.70 By element: Atomic # 1 Polarization: -15.34 SS G_CDS: -0.40 Total: -15.74 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.36 Total: 5.80 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.26 Total: -1.82 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -4.34 Total: -20.44 kcal Atomic # 14 Polarization: 0.45 SS G_CDS: 2.05 Total: 2.50 kcal Total: -31.10 1.40 -29.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.274 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds