Wall clock time and date at job start Tue Mar 9 2021 13:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47150 * 159.60846 * 3 2 1 5 5 C 1.42898 * 113.99874 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47259 * 30.00319 * 5 4 3 7 7 C 1.53002 * 109.47113 * 150.00334 * 5 4 3 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 H 1.09002 * 109.46838 * 299.99316 * 9 8 7 11 11 N 1.46497 * 109.46729 * 179.97438 * 9 8 7 12 12 C 1.34778 * 119.99664 * 155.00120 * 11 9 8 13 13 O 1.21275 * 120.00492 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99875 * 179.97438 * 12 11 9 15 15 O 1.42903 * 109.47347 * 179.97438 * 14 12 11 16 16 C 1.35989 * 117.00132 * 179.97438 * 15 14 12 17 17 C 1.39160 * 120.07392 * 180.02562 * 16 15 14 18 18 O 1.35989 * 120.06962 * 359.95400 * 17 16 15 19 19 C 1.42898 * 116.99745 * 180.02562 * 18 17 16 20 20 C 1.38560 * 119.85309 * 179.97438 * 17 16 15 21 21 C 1.38238 * 120.00164 * 359.97438 * 20 17 16 22 22 C 1.50703 * 119.92731 * 179.97438 * 21 20 17 23 23 O 1.42902 * 109.47002 * 255.00145 * 22 21 20 24 24 Si 1.86306 * 109.47120 * 14.99592 * 22 21 20 25 25 C 1.38253 * 120.14689 * 359.97438 * 21 20 17 26 26 N 1.48006 * 119.92415 * 180.02562 * 25 21 20 27 27 O 1.21805 * 119.99903 * 180.02562 * 26 25 21 28 28 O 1.21804 * 120.00276 * 359.97438 * 26 25 21 29 29 C 1.38241 * 120.14732 * 359.74630 * 25 21 20 30 30 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 31 31 C 1.52992 * 109.47106 * 300.00123 * 30 9 8 32 32 H 4.38447 * 5.44444 * 180.02562 * 4 1 2 33 33 H 1.09002 * 109.47321 * 39.60756 * 3 2 1 34 34 H 1.08997 * 109.47254 * 279.61253 * 3 2 1 35 35 H 1.09000 * 109.46986 * 300.00041 * 7 5 4 36 36 H 1.09002 * 109.47075 * 59.99312 * 7 5 4 37 37 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 38 38 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 39 39 H 0.97000 * 120.00413 * 334.99384 * 11 9 8 40 40 H 1.09006 * 109.47337 * 299.99806 * 14 12 11 41 41 H 1.09006 * 109.47440 * 59.99416 * 14 12 11 42 42 H 1.08997 * 109.47125 * 299.99512 * 19 18 17 43 43 H 1.08998 * 109.47345 * 59.99868 * 19 18 17 44 44 H 1.09011 * 109.47347 * 180.02562 * 19 18 17 45 45 H 1.08003 * 119.99696 * 180.02562 * 20 17 16 46 46 H 1.08999 * 109.47369 * 135.00215 * 22 21 20 47 47 H 0.96703 * 113.99731 * 179.97438 * 23 22 21 48 48 H 1.48502 * 109.99821 * 300.00172 * 24 22 21 49 49 H 1.48501 * 109.99767 * 61.32355 * 24 22 21 50 50 H 1.07993 * 120.00040 * 180.27473 * 29 25 21 51 51 H 1.09002 * 109.47070 * 60.00059 * 30 9 8 52 52 H 1.08996 * 109.46550 * 179.97438 * 30 9 8 53 53 H 1.09002 * 109.47103 * 299.99915 * 31 30 9 54 54 H 1.08998 * 109.46862 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2637 -0.4694 5 6 4.5463 1.3703 -0.5082 6 1 4.9794 0.3868 -0.6904 7 6 4.9560 2.3242 -1.6321 8 6 6.4811 2.4388 -1.6733 9 6 6.9881 2.9799 -0.3350 10 1 6.5547 3.9634 -0.1530 11 7 8.4485 3.0891 -0.3742 12 6 9.0802 3.9691 0.4277 13 8 8.4397 4.6709 1.1814 14 6 10.5825 4.0811 0.3878 15 8 11.0111 5.0748 1.3209 16 6 12.3490 5.3013 1.4107 17 6 12.8368 6.2548 2.2992 18 8 11.9765 6.9628 3.0789 19 6 12.5482 7.9252 3.9671 20 6 14.2009 6.4815 2.3873 21 6 15.0740 5.7609 1.5940 22 6 16.5573 6.0092 1.6907 23 8 16.9909 6.7539 0.5508 24 14 16.9254 6.9756 3.2404 25 6 14.5895 4.8128 0.7120 26 7 15.5288 4.0437 -0.1346 27 8 15.1034 3.2084 -0.9124 28 8 16.7271 4.2466 -0.0542 29 6 13.2302 4.5776 0.6233 30 6 6.5784 2.0260 0.7890 31 6 5.0534 1.9114 0.8300 32 1 -1.0501 -0.0003 0.0003 33 1 3.0098 -0.7909 -0.6552 34 1 3.0095 -0.1708 1.0132 35 1 4.5944 1.9389 -2.5855 36 1 4.5228 3.3077 -1.4500 37 1 6.9146 1.4554 -1.8553 38 1 6.7729 3.1180 -2.4743 39 1 8.9608 2.5280 -0.9772 40 1 11.0256 3.1204 0.6505 41 1 10.8992 4.3649 -0.6159 42 1 13.2255 7.4242 4.6587 43 1 13.1006 8.6679 3.3915 44 1 11.7545 8.4175 4.5292 45 1 14.5821 7.2207 3.0763 46 1 17.0840 5.0555 1.7235 47 1 17.9377 6.9508 0.5466 48 1 16.2130 8.2782 3.2079 49 1 16.5082 6.1981 4.4349 50 1 12.8546 3.8334 -0.0632 51 1 7.0119 1.0426 0.6070 52 1 6.9401 2.4114 1.7423 53 1 4.6199 2.8948 1.0120 54 1 4.7615 1.2322 1.6310 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_4549636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:07 Heat of formation + Delta-G solvation = -86.389686 kcal Electronic energy + Delta-G solvation = -40449.750595 eV Core-core repulsion = 34939.221496 eV Total energy + Delta-G solvation = -5510.529099 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.175 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.46292 -42.23482 -41.34844 -40.31587 -39.65591 -39.16192 -37.94791 -37.75346 -37.13216 -35.15460 -33.99407 -32.87336 -32.69890 -31.91521 -30.85254 -29.26360 -28.79998 -27.97912 -27.59992 -25.82845 -24.19661 -23.86950 -23.32512 -23.01662 -21.72945 -21.17354 -20.81390 -19.93630 -19.59489 -19.40609 -18.89759 -18.69586 -18.29259 -18.19237 -17.92093 -17.84112 -17.73219 -17.13890 -17.02400 -16.64062 -16.57310 -16.33515 -15.99571 -15.73571 -15.55007 -15.26546 -15.03679 -14.89299 -14.76487 -14.35200 -14.33479 -14.13652 -13.96293 -13.79957 -13.60936 -13.47930 -13.27446 -13.02527 -12.73395 -12.70075 -12.68719 -12.54305 -12.45051 -12.40993 -12.37778 -12.21898 -12.20143 -11.92581 -11.89174 -11.73341 -11.36531 -11.31713 -11.09466 -10.64015 -10.48605 -10.24409 -10.20035 -9.62319 -5.01413 -1.40565 -0.57983 0.10378 0.22505 1.14375 1.15369 1.34988 1.47024 1.56682 1.69759 1.76464 1.76702 1.79969 2.25580 2.81114 2.85455 3.03190 3.18768 3.32204 3.43085 3.50457 3.58324 3.67669 3.72036 3.76369 3.79626 3.89777 3.92008 3.98205 3.98652 4.05758 4.06034 4.09911 4.12918 4.20888 4.21782 4.27557 4.33953 4.41375 4.44260 4.49117 4.56552 4.57765 4.59882 4.77136 4.88788 4.99507 5.00014 5.07920 5.10821 5.19568 5.22441 5.24342 5.37275 5.45606 5.88588 6.17514 6.36882 6.49772 6.54889 6.83664 7.05429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.090 0.910 7 C -0.113 4.113 8 C -0.111 4.111 9 C 0.144 3.856 10 H 0.063 0.937 11 N -0.703 5.703 12 C 0.516 3.484 13 O -0.567 6.567 14 C 0.025 3.975 15 O -0.291 6.291 16 C 0.104 3.896 17 C 0.162 3.838 18 O -0.305 6.305 19 C 0.004 3.996 20 C -0.187 4.187 21 C -0.005 4.005 22 C -0.100 4.100 23 O -0.553 6.553 24 Si 0.777 3.223 25 C -0.043 4.043 26 N 0.037 4.963 27 O -0.191 6.191 28 O -0.140 6.140 29 C -0.106 4.106 30 C -0.120 4.120 31 C -0.137 4.137 32 H 0.248 0.752 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.423 0.577 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.169 0.831 46 H 0.101 0.899 47 H 0.408 0.592 48 H -0.269 1.269 49 H -0.277 1.277 50 H 0.192 0.808 51 H 0.090 0.910 52 H 0.049 0.951 53 H 0.053 0.947 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -2.282 0.514 4.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.032 3.968 6 H 0.108 0.892 7 C -0.151 4.151 8 C -0.149 4.149 9 C 0.040 3.960 10 H 0.081 0.919 11 N -0.357 5.357 12 C 0.302 3.698 13 O -0.445 6.445 14 C -0.053 4.053 15 O -0.203 6.203 16 C 0.056 3.944 17 C 0.114 3.886 18 O -0.217 6.217 19 C -0.090 4.090 20 C -0.206 4.206 21 C -0.006 4.006 22 C -0.208 4.208 23 O -0.363 6.363 24 Si 0.679 3.321 25 C -0.127 4.127 26 N 0.553 4.447 27 O -0.398 6.398 28 O -0.360 6.360 29 C -0.126 4.126 30 C -0.159 4.159 31 C -0.176 4.176 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.261 0.739 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.186 0.814 46 H 0.119 0.881 47 H 0.260 0.740 48 H -0.195 1.195 49 H -0.203 1.203 50 H 0.209 0.791 51 H 0.108 0.892 52 H 0.068 0.932 53 H 0.072 0.928 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.499 -0.884 2.039 2.680 hybrid contribution 0.011 -0.784 -0.532 0.948 sum 1.509 -1.668 1.507 2.707 Atomic orbital electron populations 1.25872 0.97000 0.96683 0.99302 1.23272 0.95197 1.03208 1.02028 1.19320 0.84083 0.86685 1.00668 1.87970 1.22719 1.34645 1.86736 1.22316 0.79429 1.00259 0.94791 0.89242 1.21521 0.95435 0.99622 0.98534 1.21709 0.94387 1.03632 0.95187 1.21040 0.78956 0.99444 0.96548 0.91863 1.45712 1.07824 1.40228 1.41950 1.20300 0.89386 0.79884 0.80241 1.90788 1.68490 1.44905 1.40316 1.22985 0.92661 0.94086 0.95541 1.86302 1.17450 1.57026 1.59564 1.17879 0.83648 0.96119 0.96722 1.18673 0.88762 0.90759 0.90442 1.86311 1.34147 1.50548 1.50683 1.23673 1.02551 0.90395 0.92357 1.21042 0.90593 1.04232 1.04736 1.19319 0.97230 0.91922 0.92173 1.25224 0.89756 1.04089 1.01746 1.86386 1.32140 1.74660 1.43160 0.93543 0.89856 0.76963 0.71730 1.20538 0.89526 1.01881 1.00751 1.43438 1.01733 0.99663 0.99891 1.94522 1.82397 1.28940 1.33971 1.94480 0.98502 1.71283 1.71782 1.20973 0.89757 1.01255 1.00578 1.21802 0.95087 1.00627 0.98351 1.21964 0.95399 1.01910 0.98293 0.73563 0.88868 0.89757 0.89689 0.92310 0.88241 0.89461 0.73862 0.85057 0.85270 0.90874 0.90900 0.85106 0.81443 0.88098 0.73962 1.19537 1.20316 0.79103 0.89157 0.93248 0.92813 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.24 -1.28 13.73 31.12 0.43 -0.85 16 3 C 0.17 0.16 6.22 70.18 0.44 0.60 16 4 O -0.40 -1.66 9.95 -148.98 -1.48 -3.14 16 5 C 0.09 -0.17 2.61 30.59 0.08 -0.09 16 6 H 0.09 -0.59 7.79 -2.39 -0.02 -0.61 16 7 C -0.11 0.36 5.57 30.59 0.17 0.54 16 8 C -0.11 0.83 5.39 30.59 0.16 1.00 16 9 C 0.14 -0.35 2.45 44.99 0.11 -0.24 16 10 H 0.06 0.27 7.58 -2.39 -0.02 0.26 16 11 N -0.70 3.64 5.08 -442.53 -2.25 1.39 16 12 C 0.52 1.12 7.87 87.66 0.69 1.81 16 13 O -0.57 -7.96 16.16 16.02 0.26 -7.70 16 14 C 0.02 -0.08 5.22 71.24 0.37 0.29 16 15 O -0.29 -1.68 9.45 -67.01 -0.63 -2.32 16 16 C 0.10 0.43 6.70 22.57 0.15 0.59 16 17 C 0.16 0.81 6.70 22.57 0.15 0.97 16 18 O -0.31 -1.75 10.28 -79.56 -0.82 -2.57 16 19 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 20 C -0.19 -0.52 7.65 22.35 0.17 -0.35 16 21 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 22 C -0.10 0.01 1.73 71.24 0.12 0.13 16 23 O -0.55 -0.26 11.77 -129.63 -1.53 -1.78 16 24 Si 0.78 -3.99 30.19 68.60 2.07 -1.92 16 25 C -0.04 -0.24 6.85 36.38 0.25 0.01 16 26 N 0.04 0.32 4.45 -46.46 -0.21 0.12 16 27 O -0.19 -1.83 18.44 18.88 0.35 -1.48 16 28 O -0.14 -1.29 14.62 25.09 0.37 -0.92 16 29 C -0.11 -0.18 8.54 22.35 0.19 0.01 16 30 C -0.12 0.22 5.49 30.59 0.17 0.39 16 31 C -0.14 0.04 5.54 30.59 0.17 0.21 16 32 H 0.25 -1.15 7.80 -4.41 -0.03 -1.18 16 33 H 0.09 -0.33 8.09 -2.39 -0.02 -0.35 16 34 H 0.08 -0.17 7.87 -2.39 -0.02 -0.19 16 35 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.42 -5.57 8.60 -92.71 -0.80 -6.37 16 40 H 0.13 -1.30 7.65 -2.38 -0.02 -1.32 16 41 H 0.13 -1.21 7.68 -2.38 -0.02 -1.23 16 42 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 43 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 44 H 0.13 -0.78 8.14 -2.38 -0.02 -0.80 16 45 H 0.17 -0.09 3.13 -2.91 -0.01 -0.10 16 46 H 0.10 -0.05 6.07 -2.39 -0.01 -0.07 16 47 H 0.41 -3.92 8.74 -74.06 -0.65 -4.57 16 48 H -0.27 0.45 6.75 99.48 0.67 1.12 16 49 H -0.28 0.19 7.11 99.48 0.71 0.90 16 50 H 0.19 -0.84 5.85 -2.91 -0.02 -0.86 16 51 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 52 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 53 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 54 H 0.07 -0.07 7.87 -2.39 -0.02 -0.09 16 Total: 0.00 -34.09 452.05 1.93 -32.16 By element: Atomic # 1 Polarization: -18.26 SS G_CDS: -0.46 Total: -18.72 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.26 Total: 6.90 kcal Atomic # 7 Polarization: 3.96 SS G_CDS: -2.45 Total: 1.51 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -3.49 Total: -19.92 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: 2.07 Total: -1.92 kcal Total: -34.09 1.93 -32.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_4549636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.231 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds