Wall clock time and date at job start Tue Mar 9 2021 13:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47122 * 66.80140 * 3 2 1 5 5 C 1.42900 * 114.00135 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47240 * 330.00027 * 5 4 3 7 7 C 1.53009 * 109.47167 * 89.99814 * 5 4 3 8 8 C 1.53002 * 109.47090 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47141 * 300.00105 * 8 7 5 10 10 H 1.09001 * 109.47066 * 300.00262 * 9 8 7 11 11 N 1.46496 * 109.47084 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00271 * 84.99619 * 11 9 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 9 15 15 O 1.42898 * 109.47171 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00172 * 179.97438 * 15 14 12 17 17 C 1.38713 * 120.05537 * 179.71958 * 16 15 14 18 18 N 1.48004 * 120.02783 * 0.02562 * 17 16 15 19 19 O 1.21806 * 119.99724 * 179.97438 * 18 17 16 20 20 O 1.21795 * 120.00385 * 0.02562 * 18 17 16 21 21 C 1.38166 * 119.93976 * 179.74838 * 17 16 15 22 22 C 1.38245 * 120.05956 * 0.52938 * 21 17 16 23 23 C 1.50696 * 119.94568 * 179.76243 * 22 21 17 24 24 O 1.42893 * 109.47448 * 299.98240 * 23 22 21 25 25 Si 1.86305 * 109.46934 * 179.97438 * 23 22 21 26 26 C 1.38287 * 120.10835 * 359.75060 * 22 21 17 27 27 C 1.38123 * 120.05712 * 359.97370 * 26 22 21 28 28 C 1.53002 * 109.47405 * 60.00131 * 9 8 7 29 29 C 1.52998 * 109.47476 * 209.99764 * 5 4 3 30 30 H 4.38440 * 5.44433 * 179.97438 * 4 1 2 31 31 H 1.08999 * 109.47422 * 306.79681 * 3 2 1 32 32 H 1.09004 * 109.47086 * 186.80247 * 3 2 1 33 33 H 1.09004 * 109.46811 * 300.00511 * 7 5 4 34 34 H 1.09001 * 109.46866 * 59.99984 * 7 5 4 35 35 H 1.09002 * 109.46730 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46674 * 60.00484 * 8 7 5 37 37 H 0.97005 * 120.00266 * 265.00202 * 11 9 8 38 38 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 39 39 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 40 40 H 1.08009 * 119.96761 * 180.27644 * 21 17 16 41 41 H 1.09009 * 109.46768 * 59.98586 * 23 22 21 42 42 H 0.96703 * 114.00417 * 299.99838 * 24 23 22 43 43 H 1.48499 * 109.99790 * 58.68525 * 25 23 22 44 44 H 1.48506 * 109.99813 * 180.02562 * 25 23 22 45 45 H 1.08001 * 119.97215 * 179.97438 * 26 22 21 46 46 H 1.08003 * 120.03221 * 180.02562 * 27 26 22 47 47 H 1.08997 * 109.46609 * 59.99617 * 28 9 8 48 48 H 1.09002 * 109.47469 * 179.97438 * 28 9 8 49 49 H 1.09002 * 109.46949 * 60.00275 * 29 5 4 50 50 H 1.08997 * 109.47585 * 300.00411 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.5298 -1.2383 5 6 4.5471 -0.5731 -1.3423 6 1 4.9790 0.2378 -0.7558 7 6 5.0567 -1.9144 -0.8109 8 6 6.5820 -1.9605 -0.9216 9 6 6.9919 -1.8036 -2.3872 10 1 6.5603 -2.6145 -2.9740 11 7 8.4524 -1.8483 -2.4933 12 6 9.0859 -3.0349 -2.5775 13 8 8.4470 -4.0656 -2.5658 14 6 10.5883 -3.0809 -2.6860 15 8 11.0190 -4.4413 -2.7620 16 6 12.3563 -4.6603 -2.8651 17 6 12.8444 -5.9567 -2.9372 18 7 11.9091 -7.1033 -2.9025 19 8 12.3383 -8.2415 -2.9663 20 8 10.7103 -6.9088 -2.8111 21 6 14.2040 -6.1765 -3.0472 22 6 15.0785 -5.1062 -3.0744 23 6 16.5614 -5.3490 -3.1891 24 8 17.0039 -6.1286 -2.0763 25 14 17.4589 -3.7165 -3.2000 26 6 14.5948 -3.8130 -2.9969 27 6 13.2360 -3.5877 -2.8925 28 6 6.4824 -0.4624 -2.9186 29 6 4.9565 -0.4165 -2.8081 30 1 -1.0499 -0.0002 -0.0001 31 1 3.0096 -0.6147 0.8229 32 1 3.0088 1.0213 0.1217 33 1 4.7650 -2.0259 0.2335 34 1 4.6248 -2.7253 -1.3974 35 1 6.9450 -2.9162 -0.5434 36 1 7.0135 -1.1496 -0.3348 37 1 8.9635 -1.0239 -2.5030 38 1 11.0306 -2.6079 -1.8092 39 1 10.9042 -2.5495 -3.5838 40 1 14.5843 -7.1856 -3.1079 41 1 16.7712 -5.8851 -4.1147 42 1 16.8486 -5.7119 -1.2175 43 1 17.1557 -2.9619 -1.9576 44 1 18.9224 -3.9422 -3.3134 45 1 15.2800 -2.9784 -3.0179 46 1 12.8586 -2.5776 -2.8324 47 1 6.9139 0.3485 -2.3318 48 1 6.7748 -0.3504 -3.9627 49 1 4.5935 0.5390 -3.1866 50 1 4.5246 -1.2274 -3.3946 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:11 Heat of formation + Delta-G solvation = -61.899589 kcal Electronic energy + Delta-G solvation = -35537.957223 eV Core-core repulsion = 30502.709905 eV Total energy + Delta-G solvation = -5035.247318 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.160 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.29232 -41.80132 -41.07293 -40.10087 -39.38969 -37.88914 -37.62048 -37.43347 -35.09203 -33.97231 -33.47233 -32.26827 -31.87003 -30.82999 -28.99396 -27.82295 -27.60746 -26.52402 -24.25797 -23.83185 -23.18516 -22.72964 -21.63155 -21.11399 -20.52384 -19.77584 -19.40189 -19.18283 -18.63685 -18.48587 -18.20522 -17.89802 -17.56457 -17.28560 -17.06437 -16.61165 -16.36348 -16.28776 -16.12515 -15.73201 -15.64650 -15.25080 -14.99866 -14.87704 -14.73755 -14.31322 -14.04851 -13.91352 -13.72193 -13.66857 -13.47583 -13.23225 -13.21272 -12.71019 -12.65485 -12.41163 -12.38138 -12.31852 -12.27316 -12.20829 -12.16387 -11.85926 -11.80927 -11.70354 -11.33504 -11.28451 -10.97648 -10.83342 -10.75101 -10.45095 -10.12428 -9.79317 -4.91379 -1.31471 -0.23704 0.15773 0.35705 1.21668 1.27298 1.48259 1.48899 1.61077 1.78198 2.02670 2.05532 2.32698 2.88300 3.11759 3.25437 3.35385 3.45414 3.52325 3.58342 3.66622 3.71910 3.72086 3.77149 3.94115 4.02483 4.03005 4.10614 4.16149 4.24787 4.29601 4.30800 4.37892 4.40042 4.45135 4.46865 4.56296 4.62119 4.64562 4.82241 4.84660 4.92769 5.01592 5.03650 5.07987 5.11901 5.15126 5.19561 5.25690 5.28950 5.46242 5.77212 6.20475 6.41113 6.45093 6.49244 6.56377 7.20053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.401 6.401 5 C 0.090 3.910 6 H 0.092 0.908 7 C -0.139 4.139 8 C -0.119 4.119 9 C 0.144 3.856 10 H 0.058 0.942 11 N -0.702 5.702 12 C 0.506 3.494 13 O -0.567 6.567 14 C 0.024 3.976 15 O -0.293 6.293 16 C 0.194 3.806 17 C -0.106 4.106 18 N 0.035 4.965 19 O -0.205 6.205 20 O -0.175 6.175 21 C -0.004 4.004 22 C -0.148 4.148 23 C -0.092 4.092 24 O -0.551 6.551 25 Si 0.790 3.210 26 C -0.004 4.004 27 C -0.188 4.188 28 C -0.109 4.109 29 C -0.114 4.114 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.424 0.576 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.127 0.873 42 H 0.389 0.611 43 H -0.260 1.260 44 H -0.309 1.309 45 H 0.190 0.810 46 H 0.208 0.792 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 17.315 -0.190 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.237 4.237 3 C 0.093 3.907 4 O -0.322 6.322 5 C 0.033 3.967 6 H 0.109 0.891 7 C -0.177 4.177 8 C -0.158 4.158 9 C 0.040 3.960 10 H 0.076 0.924 11 N -0.357 5.357 12 C 0.292 3.708 13 O -0.444 6.444 14 C -0.052 4.052 15 O -0.203 6.203 16 C 0.144 3.856 17 C -0.191 4.191 18 N 0.544 4.456 19 O -0.412 6.412 20 O -0.388 6.388 21 C -0.023 4.023 22 C -0.149 4.149 23 C -0.198 4.198 24 O -0.360 6.360 25 Si 0.692 3.308 26 C -0.021 4.021 27 C -0.206 4.206 28 C -0.146 4.146 29 C -0.152 4.152 30 H 0.264 0.736 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.263 0.737 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.144 0.856 42 H 0.238 0.762 43 H -0.186 1.186 44 H -0.238 1.238 45 H 0.206 0.794 46 H 0.225 0.775 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.769 16.963 -0.412 18.268 hybrid contribution -0.685 -1.650 1.327 2.225 sum 6.084 15.314 0.915 16.503 Atomic orbital electron populations 1.25861 0.97011 0.99204 0.96872 1.23286 0.95228 1.02051 1.03105 1.19322 0.84029 1.00004 0.87381 1.87972 1.22824 1.84772 1.36606 1.22326 0.79353 0.97054 0.98003 0.89053 1.21982 0.95663 0.98305 1.01793 1.21798 0.94875 1.02467 0.96676 1.20986 0.79415 0.99365 0.96253 0.92365 1.45648 1.07489 1.08103 1.74425 1.20562 0.90010 0.84017 0.76210 1.90859 1.68729 1.35218 1.49620 1.23150 0.92107 0.81456 1.08517 1.86475 1.18491 1.29869 1.85452 1.18983 0.84452 0.91499 0.90629 1.20879 0.90475 0.83380 1.24366 1.43920 1.02075 1.02599 0.96983 1.94504 1.82132 1.09100 1.55432 1.94680 0.98683 1.91934 1.53536 1.20839 0.87829 1.02711 0.90927 1.20380 0.96713 0.92486 1.05337 1.25531 0.91538 1.10017 0.92757 1.86633 1.83854 1.47765 1.17707 0.94180 0.76505 0.74038 0.86030 1.21726 0.95663 0.96639 0.88079 1.21823 0.92590 0.99201 1.06993 1.21704 0.94082 0.95537 1.03323 1.21545 0.95750 1.03390 0.94551 0.73613 0.89849 0.88727 0.91151 0.93138 0.93589 0.88900 0.73682 0.83807 0.83530 0.83313 0.85566 0.76154 1.18570 1.23796 0.79367 0.77513 0.87957 0.89303 0.89616 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.24 -1.25 13.73 31.13 0.43 -0.82 16 3 C 0.17 0.11 6.22 70.18 0.44 0.55 16 4 O -0.40 -1.58 9.95 -148.98 -1.48 -3.06 16 5 C 0.09 -0.23 2.61 30.60 0.08 -0.15 16 6 H 0.09 -0.70 7.79 -2.39 -0.02 -0.72 16 7 C -0.14 0.03 5.54 30.60 0.17 0.20 16 8 C -0.12 0.29 5.49 30.59 0.17 0.46 16 9 C 0.14 -0.52 2.45 44.99 0.11 -0.41 16 10 H 0.06 0.25 7.58 -2.39 -0.02 0.23 16 11 N -0.70 5.59 5.08 -442.54 -2.25 3.34 16 12 C 0.51 0.00 7.87 87.66 0.69 0.69 16 13 O -0.57 -8.29 16.16 16.01 0.26 -8.03 16 14 C 0.02 -0.21 5.22 71.24 0.37 0.16 16 15 O -0.29 -1.11 7.68 -63.41 -0.49 -1.59 16 16 C 0.19 -0.03 6.67 22.51 0.15 0.12 16 17 C -0.11 -0.71 6.87 36.47 0.25 -0.46 16 18 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 19 O -0.20 -3.88 18.45 18.88 0.35 -3.53 16 20 O -0.17 -3.83 17.24 25.61 0.44 -3.39 16 21 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 22 C -0.15 0.93 5.39 -19.85 -0.11 0.83 16 23 C -0.09 0.61 2.82 71.23 0.20 0.82 16 24 O -0.55 0.91 12.77 -148.98 -1.90 -0.99 16 25 Si 0.79 -8.39 29.78 68.60 2.04 -6.35 16 26 C 0.00 0.05 8.66 22.25 0.19 0.24 16 27 C -0.19 2.23 9.04 22.37 0.20 2.44 16 28 C -0.11 1.01 5.39 30.61 0.17 1.17 16 29 C -0.11 0.47 5.58 30.61 0.17 0.64 16 30 H 0.25 -1.13 7.80 -4.42 -0.03 -1.17 16 31 H 0.08 -0.18 7.87 -2.39 -0.02 -0.20 16 32 H 0.10 -0.40 8.08 -2.38 -0.02 -0.42 16 33 H 0.07 -0.05 7.87 -2.38 -0.02 -0.06 16 34 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.42 -7.44 8.60 -92.70 -0.80 -8.23 16 38 H 0.14 -2.51 7.66 -2.39 -0.02 -2.53 16 39 H 0.15 -2.61 7.66 -2.39 -0.02 -2.62 16 40 H 0.15 0.56 7.61 -2.91 -0.02 0.54 16 41 H 0.13 -0.91 7.96 -2.38 -0.02 -0.93 16 42 H 0.39 -3.12 8.70 -74.06 -0.64 -3.77 16 43 H -0.26 2.49 7.11 99.48 0.71 3.20 16 44 H -0.31 0.13 7.11 99.48 0.71 0.84 16 45 H 0.19 -3.83 4.87 -2.91 -0.01 -3.85 16 46 H 0.21 -4.62 6.30 -2.91 -0.02 -4.64 16 47 H 0.10 -1.48 8.14 -2.39 -0.02 -1.50 16 48 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 49 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 50 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -44.89 427.05 1.68 -43.21 By element: Atomic # 1 Polarization: -27.18 SS G_CDS: -0.40 Total: -27.58 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.31 Total: 7.59 kcal Atomic # 7 Polarization: 6.18 SS G_CDS: -2.45 Total: 3.72 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -2.82 Total: -20.59 kcal Atomic # 14 Polarization: -8.39 SS G_CDS: 2.04 Total: -6.35 kcal Total: -44.89 1.68 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.691 kcal (2) G-P(sol) polarization free energy of solvation -44.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds