Wall clock time and date at job start Tue Mar 9 2021 13:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47175 * 143.67379 * 3 2 1 5 5 C 1.42894 * 114.00382 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47228 * 329.99696 * 5 4 3 7 7 C 1.52997 * 109.47281 * 89.99967 * 5 4 3 8 8 C 1.53001 * 109.47152 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47303 * 299.99902 * 8 7 5 10 10 H 1.09003 * 109.46641 * 300.00266 * 9 8 7 11 11 N 1.46500 * 109.47359 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00045 * 84.99930 * 11 9 8 13 13 O 1.21284 * 119.99824 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99895 * 180.02562 * 12 11 9 15 15 N 1.46501 * 109.46897 * 180.02562 * 14 12 11 16 16 C 1.36838 * 125.05911 * 264.99496 * 15 14 12 17 17 C 1.34235 * 109.93691 * 180.02562 * 16 15 14 18 18 C 1.50701 * 126.50273 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47080 * 104.97264 * 18 17 16 20 20 Si 1.86299 * 109.46634 * 344.97559 * 18 17 16 21 21 C 1.46490 * 107.00215 * 0.02562 * 17 16 15 22 22 C 1.39597 * 134.04506 * 180.02562 * 21 17 16 23 23 C 1.36661 * 119.76503 * 179.75449 * 22 21 17 24 24 C 1.38785 * 120.53167 * 0.47938 * 23 22 21 25 25 C 1.37797 * 120.66211 * 359.49774 * 24 23 22 26 26 C 1.37689 * 125.06780 * 84.99953 * 15 14 12 27 27 C 1.53003 * 109.47213 * 59.99821 * 9 8 7 28 28 C 1.53001 * 109.47132 * 300.00284 * 27 9 8 29 29 H 4.38447 * 5.44566 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47683 * 23.67369 * 3 2 1 31 31 H 1.08993 * 109.47352 * 263.67107 * 3 2 1 32 32 H 1.09000 * 109.46901 * 300.00053 * 7 5 4 33 33 H 1.08998 * 109.47310 * 60.00184 * 7 5 4 34 34 H 1.09006 * 109.47514 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47489 * 59.99648 * 8 7 5 36 36 H 0.96997 * 119.99582 * 264.99521 * 11 9 8 37 37 H 1.08997 * 109.47456 * 60.00376 * 14 12 11 38 38 H 1.08997 * 109.47099 * 299.99578 * 14 12 11 39 39 H 1.07992 * 125.03174 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.47232 * 224.97471 * 18 17 16 41 41 H 0.96700 * 114.00454 * 300.00007 * 19 18 17 42 42 H 1.48503 * 109.99683 * 180.02562 * 20 18 17 43 43 H 1.48502 * 110.00088 * 301.31915 * 20 18 17 44 44 H 1.07997 * 120.10936 * 359.97438 * 22 21 17 45 45 H 1.08002 * 119.73315 * 180.23224 * 23 22 21 46 46 H 1.08002 * 119.67131 * 179.78029 * 24 23 22 47 47 H 1.07998 * 120.10584 * 180.28277 * 25 24 23 48 48 H 1.08998 * 109.47052 * 60.00172 * 27 9 8 49 49 H 1.09000 * 109.47178 * 180.02562 * 27 9 8 50 50 H 1.09001 * 109.47017 * 179.97438 * 28 27 9 51 51 H 1.08998 * 109.47060 * 299.99883 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 1.0863 -0.7981 5 6 4.5462 1.1776 -0.8655 6 1 4.9792 0.7903 0.0569 7 6 5.0544 0.3558 -2.0517 8 6 6.5797 0.4530 -2.1235 9 6 6.9896 1.9160 -2.3036 10 1 6.5570 2.3036 -3.2260 11 7 8.4500 2.0091 -2.3729 12 6 9.0821 1.8218 -3.5483 13 8 8.4419 1.5768 -4.5489 14 6 10.5844 1.9170 -3.6195 15 7 11.0243 1.6765 -4.9960 16 6 11.4326 0.4679 -5.4909 17 6 11.7684 0.5928 -6.7846 18 6 12.2667 -0.5030 -7.6913 19 8 11.2221 -0.8940 -8.5845 20 14 12.7880 -1.9683 -6.6658 21 6 11.5585 1.9963 -7.1480 22 6 11.7255 2.7298 -8.3240 23 6 11.4282 4.0635 -8.3397 24 6 10.9708 4.6975 -7.1929 25 6 10.7984 3.9926 -6.0215 26 6 11.0885 2.6329 -5.9845 27 6 6.4814 2.7379 -1.1173 28 6 4.9561 2.6407 -1.0456 29 1 -1.0502 -0.0001 0.0003 30 1 3.0098 -0.9403 -0.4126 31 1 3.0092 0.1141 1.0213 32 1 4.7628 -0.6865 -1.9232 33 1 4.6216 0.7431 -2.9741 34 1 6.9418 -0.1328 -2.9684 35 1 7.0123 0.0655 -1.2011 36 1 8.9619 2.2055 -1.5727 37 1 11.0274 1.1703 -2.9605 38 1 10.9007 2.9118 -3.3060 39 1 11.4788 -0.4504 -4.9244 40 1 13.1189 -0.1398 -8.2657 41 1 10.4303 -1.2284 -8.1414 42 1 13.2821 -3.0558 -7.5482 43 1 13.8518 -1.5672 -5.7105 44 1 12.0849 2.2440 -9.2190 45 1 11.5539 4.6297 -9.2508 46 1 10.7434 5.7529 -7.2200 47 1 10.4376 4.4940 -5.1356 48 1 6.9139 2.3503 -0.1949 49 1 6.7730 3.7802 -1.2459 50 1 4.5941 3.2258 -0.2002 51 1 4.5236 3.0282 -1.9680 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:08 Heat of formation + Delta-G solvation = 10.692882 kcal Electronic energy + Delta-G solvation = -32801.593812 eV Core-core repulsion = 28441.777156 eV Total energy + Delta-G solvation = -4359.816655 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52691 -41.07561 -39.93847 -38.16148 -37.93686 -37.50427 -35.05492 -34.13840 -33.82992 -31.86807 -31.56226 -30.25953 -30.12052 -28.63274 -27.59468 -25.73280 -23.92615 -23.77459 -23.24106 -22.49960 -21.56025 -21.12622 -20.62046 -19.39018 -18.62778 -18.33324 -17.91008 -17.77230 -17.35413 -16.90022 -16.66642 -16.44084 -16.29111 -16.22962 -15.92287 -15.46808 -15.36129 -15.06034 -14.89183 -14.81604 -14.70058 -14.42518 -14.26594 -14.05674 -13.81134 -13.64191 -13.46709 -13.25823 -13.13785 -12.73504 -12.65220 -12.55637 -12.34637 -12.23973 -12.15773 -12.11689 -11.85182 -11.81315 -11.70030 -11.33397 -11.28014 -11.07204 -10.54841 -10.43793 -10.30331 -10.08572 -9.16100 -8.62550 -4.99896 0.13591 0.62608 1.36841 1.41650 1.49428 1.51977 1.69129 1.71889 1.78775 2.00286 2.23199 2.88580 2.93958 3.52440 3.57160 3.61018 3.68269 3.70123 3.72680 3.77436 3.88931 4.03436 4.04990 4.11777 4.16339 4.18304 4.21132 4.25065 4.29730 4.31349 4.38944 4.45815 4.47282 4.47717 4.55433 4.63257 4.71174 4.78201 4.82211 4.87832 4.93224 5.02009 5.04910 5.12030 5.12558 5.14992 5.26440 5.29923 5.49007 5.49497 5.64897 5.72548 5.74894 6.20318 6.20892 6.24669 6.53953 6.56896 6.81740 7.21169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.402 6.402 5 C 0.089 3.911 6 H 0.090 0.910 7 C -0.138 4.138 8 C -0.116 4.116 9 C 0.146 3.854 10 H 0.056 0.944 11 N -0.707 5.707 12 C 0.492 3.508 13 O -0.569 6.569 14 C 0.087 3.913 15 N -0.466 5.466 16 C 0.081 3.919 17 C -0.227 4.227 18 C -0.048 4.048 19 O -0.565 6.565 20 Si 0.795 3.205 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.133 4.133 26 C 0.091 3.909 27 C -0.111 4.111 28 C -0.114 4.114 29 H 0.247 0.753 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.421 0.579 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.209 0.791 40 H 0.091 0.909 41 H 0.390 0.610 42 H -0.302 1.302 43 H -0.273 1.273 44 H 0.115 0.885 45 H 0.135 0.865 46 H 0.145 0.855 47 H 0.134 0.866 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -0.650 11.843 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.322 6.322 5 C 0.032 3.968 6 H 0.108 0.892 7 C -0.176 4.176 8 C -0.155 4.155 9 C 0.041 3.959 10 H 0.074 0.926 11 N -0.360 5.360 12 C 0.278 3.722 13 O -0.447 6.447 14 C -0.037 4.037 15 N -0.148 5.148 16 C -0.044 4.044 17 C -0.234 4.234 18 C -0.157 4.157 19 O -0.372 6.372 20 Si 0.699 3.301 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.173 4.173 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.015 4.015 27 C -0.149 4.149 28 C -0.152 4.152 29 H 0.264 0.736 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.260 0.740 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.226 0.774 40 H 0.109 0.891 41 H 0.239 0.761 42 H -0.230 1.230 43 H -0.199 1.199 44 H 0.133 0.867 45 H 0.153 0.847 46 H 0.163 0.837 47 H 0.152 0.848 48 H 0.118 0.882 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.400 -0.978 11.160 11.290 hybrid contribution -0.048 0.581 -0.695 0.907 sum 1.353 -0.396 10.466 10.560 Atomic orbital electron populations 1.25860 0.97013 0.97561 0.98546 1.23287 0.95231 1.02786 1.02338 1.19323 0.84007 0.91017 0.96365 1.87970 1.22828 1.50145 1.71271 1.22321 0.79378 0.96590 0.98505 0.89184 1.21968 0.95818 1.00895 0.98930 1.21771 0.94660 0.96133 1.02924 1.20937 0.79780 0.95874 0.99336 0.92572 1.45843 1.07447 1.71824 1.10888 1.21406 0.91198 0.76268 0.83374 1.90815 1.68534 1.48744 1.36646 1.22010 0.90891 1.09034 0.81808 1.43454 1.55322 1.06849 1.09203 1.22075 0.98788 0.89587 0.93984 1.20799 1.13474 0.93807 0.95317 1.24715 0.92623 1.02269 0.96061 1.86441 1.28750 1.85683 1.36344 0.93991 0.83849 0.73776 0.78469 1.19385 1.04844 0.94176 0.93838 1.20438 0.99750 0.94336 0.96502 1.20903 1.02416 0.94534 0.99475 1.21124 0.99123 1.00662 0.91928 1.20255 1.04650 0.90542 0.99893 1.18383 1.02819 0.91600 0.88663 1.21698 0.94162 1.00986 0.98041 1.21528 0.95722 0.94887 1.03077 0.73647 0.89653 0.88862 0.90941 0.93176 0.92938 0.89076 0.74046 0.81588 0.84114 0.77421 0.89141 0.76054 1.22963 1.19934 0.86708 0.84743 0.83728 0.84831 0.88225 0.89800 0.89945 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.41 19.25 74.32 1.43 1.02 16 2 C -0.24 -1.10 13.73 31.13 0.43 -0.67 16 3 C 0.17 -0.01 6.22 70.18 0.44 0.42 16 4 O -0.40 -1.30 9.95 -148.98 -1.48 -2.78 16 5 C 0.09 -0.29 2.61 30.60 0.08 -0.21 16 6 H 0.09 -0.73 7.79 -2.39 -0.02 -0.75 16 7 C -0.14 0.27 5.54 30.59 0.17 0.44 16 8 C -0.12 0.53 5.49 30.59 0.17 0.70 16 9 C 0.15 -0.70 2.45 44.99 0.11 -0.59 16 10 H 0.06 0.17 7.58 -2.39 -0.02 0.15 16 11 N -0.71 6.25 5.08 -442.53 -2.25 4.01 16 12 C 0.49 -1.29 7.86 87.66 0.69 -0.60 16 13 O -0.57 -5.40 16.08 -3.04 -0.05 -5.45 16 14 C 0.09 -0.73 6.48 85.63 0.56 -0.18 16 15 N -0.47 -0.48 2.27 -520.01 -1.18 -1.65 16 16 C 0.08 0.02 9.89 83.00 0.82 0.84 16 17 C -0.23 -1.34 5.57 -18.63 -0.10 -1.45 16 18 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 19 O -0.56 -3.88 12.88 -148.98 -1.92 -5.79 16 20 Si 0.80 -1.04 30.75 68.60 2.11 1.07 16 21 C -0.12 -1.27 6.35 -20.20 -0.13 -1.39 16 22 C -0.09 -1.00 10.05 22.23 0.22 -0.78 16 23 C -0.15 -1.21 9.97 22.03 0.22 -0.99 16 24 C -0.11 -0.63 10.01 22.30 0.22 -0.41 16 25 C -0.13 -0.76 10.00 22.37 0.22 -0.53 16 26 C 0.09 0.68 6.80 39.03 0.27 0.95 16 27 C -0.11 1.01 5.39 30.60 0.17 1.17 16 28 C -0.11 0.48 5.57 30.60 0.17 0.65 16 29 H 0.25 -1.25 7.80 -4.41 -0.03 -1.29 16 30 H 0.09 -0.28 7.87 -2.39 -0.02 -0.29 16 31 H 0.09 -0.44 8.08 -2.39 -0.02 -0.46 16 32 H 0.07 -0.19 7.87 -2.39 -0.02 -0.21 16 33 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 35 H 0.09 -0.84 8.14 -2.39 -0.02 -0.85 16 36 H 0.42 -7.05 8.60 -92.71 -0.80 -7.85 16 37 H 0.17 -2.85 8.12 -2.39 -0.02 -2.87 16 38 H 0.14 -1.82 8.14 -2.39 -0.02 -1.84 16 39 H 0.21 -1.86 6.34 -2.91 -0.02 -1.88 16 40 H 0.09 0.65 7.96 -2.39 -0.02 0.63 16 41 H 0.39 -0.24 8.70 -74.06 -0.64 -0.88 16 42 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 43 H -0.27 -0.44 7.11 99.48 0.71 0.27 16 44 H 0.11 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.13 0.52 8.06 -2.91 -0.02 0.49 16 46 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 47 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 48 H 0.10 -1.37 8.14 -2.39 -0.02 -1.39 16 49 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 50 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 51 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -33.46 427.63 1.14 -32.32 By element: Atomic # 1 Polarization: -19.65 SS G_CDS: -0.46 Total: -20.11 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 6.36 Total: -1.61 kcal Atomic # 7 Polarization: 5.78 SS G_CDS: -3.43 Total: 2.35 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -3.45 Total: -14.02 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.11 Total: 1.07 kcal Total: -33.46 1.14 -32.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.014 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds