Wall clock time and date at job start Tue Mar 9 2021 13:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30275 * 126.28093 * 2 1 4 4 N 1.28665 * 109.37820 * 179.73448 * 3 2 1 5 5 C 1.30277 * 109.38189 * 0.43777 * 4 3 2 6 6 C 1.50701 * 126.28312 * 179.82623 * 5 4 3 7 7 H 1.09004 * 112.84862 * 168.49531 * 6 5 4 8 8 C 1.53780 * 113.61578 * 299.69368 * 6 5 4 9 9 C 1.53783 * 87.07925 * 140.06527 * 8 6 5 10 10 H 1.09003 * 113.61232 * 89.20047 * 9 8 6 11 11 N 1.46496 * 113.61323 * 220.01651 * 9 8 6 12 12 C 1.34777 * 120.00271 * 204.99760 * 11 9 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 9 15 15 C 1.50701 * 109.47064 * 180.02562 * 14 12 11 16 16 C 1.38233 * 120.00099 * 269.72899 * 15 14 12 17 17 C 1.38234 * 119.99645 * 179.78840 * 16 15 14 18 18 C 1.38232 * 120.00446 * 0.46326 * 17 16 15 19 19 C 1.50693 * 120.00107 * 179.79093 * 18 17 16 20 20 O 1.42905 * 109.47136 * 244.97697 * 19 18 17 21 21 Si 1.86293 * 109.47320 * 4.97611 * 19 18 17 22 22 C 1.38240 * 119.99683 * 359.76905 * 18 17 16 23 23 C 1.38234 * 120.00218 * 0.02562 * 22 18 17 24 24 C 1.53781 * 87.08297 * 334.56771 * 9 8 6 25 25 O 1.34359 * 126.28180 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46668 * 270.00677 * 1 2 3 27 27 H 1.08996 * 109.46741 * 30.00047 * 1 2 3 28 28 H 1.09001 * 109.47294 * 150.00021 * 1 2 3 29 29 H 1.09002 * 113.61383 * 25.51634 * 8 6 5 30 30 H 1.09002 * 113.68732 * 254.62103 * 8 6 5 31 31 H 0.97005 * 120.00266 * 25.00343 * 11 9 8 32 32 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 33 33 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 34 34 H 1.08003 * 119.99927 * 359.97438 * 16 15 14 35 35 H 1.08005 * 119.99562 * 180.24672 * 17 16 15 36 36 H 1.09004 * 109.47341 * 124.97922 * 19 18 17 37 37 H 0.96700 * 113.99912 * 180.02562 * 20 19 18 38 38 H 1.48508 * 110.00154 * 178.68166 * 21 19 18 39 39 H 1.48499 * 109.99993 * 299.99782 * 21 19 18 40 40 H 1.08000 * 119.99654 * 180.02562 * 22 18 17 41 41 H 1.07995 * 119.99943 * 179.97438 * 23 22 18 42 42 H 1.09000 * 113.61499 * 139.97811 * 24 9 8 43 43 H 1.09000 * 113.61078 * 270.88680 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0056 5 6 3.5654 -0.6254 0.0000 6 6 4.8176 -1.4638 0.0000 7 1 4.6212 -2.5181 0.1951 8 6 5.7214 -1.2212 -1.2203 9 6 6.9158 -1.3204 -0.2567 10 1 7.2938 -2.3352 -0.1330 11 7 7.9760 -0.3483 -0.5343 12 6 9.2430 -0.6057 -0.1535 13 8 9.5054 -1.6424 0.4186 14 6 10.3335 0.3946 -0.4385 15 6 11.6458 -0.1302 0.0846 16 6 12.0413 0.1619 1.3766 17 6 13.2430 -0.3232 1.8578 18 6 14.0536 -1.0923 1.0440 19 6 15.3657 -1.6171 1.5672 20 8 16.4412 -1.0249 0.8359 21 14 15.5313 -1.1871 3.3722 22 6 13.6603 -1.3804 -0.2495 23 6 12.4566 -0.8989 -0.7294 24 6 5.9523 -0.8797 0.8579 25 8 2.3021 -1.0831 0.0005 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 5.5995 -0.2332 -1.6644 30 1 5.6871 -2.0237 -1.9572 31 1 7.7662 0.4808 -0.9921 32 1 10.0978 1.3389 0.0523 33 1 10.4089 0.5532 -1.5143 34 1 11.4101 0.7665 2.0109 35 1 13.5501 -0.0983 2.8685 36 1 15.3978 -2.7001 1.4473 37 1 17.3180 -1.3180 1.1194 38 1 16.8069 -1.7267 3.9080 39 1 15.4893 0.2868 3.5491 40 1 14.2934 -1.9816 -0.8852 41 1 12.1496 -1.1236 -1.7401 42 1 6.1036 -1.4073 1.7997 43 1 5.8936 0.2016 0.9820 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12335836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:37 Heat of formation + Delta-G solvation = 21.018477 kcal Electronic energy + Delta-G solvation = -26491.695030 eV Core-core repulsion = 22506.201593 eV Total energy + Delta-G solvation = -3985.493436 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.31530 -41.35581 -40.47374 -39.33387 -37.74830 -37.26145 -34.85515 -34.13850 -33.49821 -31.92668 -30.15579 -29.34697 -26.88292 -26.85310 -25.59283 -23.81460 -23.79792 -23.39317 -22.04921 -21.35786 -20.74041 -18.60685 -18.57738 -18.49442 -18.01792 -17.65584 -17.16547 -16.93044 -16.45240 -16.23874 -15.95021 -15.51947 -15.48953 -15.19030 -14.63981 -14.53853 -14.36186 -14.24161 -13.98306 -13.73947 -13.62426 -13.60896 -13.54806 -13.43126 -13.01852 -12.97817 -12.90298 -12.63827 -12.30945 -12.24097 -11.94289 -11.88677 -11.85465 -11.72430 -10.92037 -10.50656 -10.47775 -10.04352 -9.85905 -9.59406 -4.94375 0.06695 0.25044 0.47184 1.20064 1.25380 1.27823 1.56143 1.65980 1.90021 2.20625 2.73222 2.82432 3.22830 3.38890 3.40766 3.51103 3.66265 3.69625 3.74491 3.86310 3.92101 4.01015 4.06689 4.08867 4.31042 4.31441 4.45028 4.46951 4.50903 4.53094 4.53471 4.64209 4.65406 4.68834 4.70621 4.73652 4.84191 4.90389 5.02035 5.03092 5.10217 5.17272 5.39261 5.54956 5.55767 5.60201 6.02783 6.56741 6.57831 7.20858 7.28932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.332 5.332 4 N -0.312 5.312 5 C 0.176 3.824 6 C -0.021 4.021 7 H 0.147 0.853 8 C -0.118 4.118 9 C 0.131 3.869 10 H 0.117 0.883 11 N -0.710 5.710 12 C 0.518 3.482 13 O -0.572 6.572 14 C -0.100 4.100 15 C -0.071 4.071 16 C -0.111 4.111 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.086 4.086 20 O -0.558 6.558 21 Si 0.759 3.241 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.133 4.133 25 O -0.232 6.232 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.394 0.606 38 H -0.283 1.283 39 H -0.296 1.296 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.085 0.915 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -2.255 -1.401 5.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.178 5.178 4 N -0.157 5.157 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.165 0.835 8 C -0.157 4.157 9 C 0.025 3.975 10 H 0.134 0.866 11 N -0.362 5.362 12 C 0.306 3.694 13 O -0.451 6.451 14 C -0.140 4.140 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.145 4.145 18 C -0.091 4.091 19 C -0.195 4.195 20 O -0.367 6.367 21 Si 0.665 3.335 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.172 4.172 25 O -0.112 6.112 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.254 0.746 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.244 0.756 38 H -0.210 1.210 39 H -0.224 1.224 40 H 0.144 0.856 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.343 -1.035 -0.700 4.519 hybrid contribution 0.664 -0.714 -0.713 1.207 sum -3.680 -1.749 -1.413 4.312 Atomic orbital electron populations 1.20703 0.76973 1.07270 1.06837 1.28980 0.99362 0.78866 0.97187 1.74370 0.96557 1.27048 1.19830 1.74223 1.12658 1.10213 1.18604 1.28275 0.85396 0.91419 0.98469 1.21259 0.82727 0.99012 1.01132 0.83495 1.23428 0.91668 1.04824 0.95769 1.22261 0.85425 0.94690 0.95082 0.86554 1.45873 1.06826 1.23106 1.60410 1.20915 0.83857 0.87281 0.77380 1.90737 1.83098 1.28532 1.42693 1.20764 0.88935 0.98764 1.05498 1.19583 0.95480 0.97803 0.94297 1.21202 0.96225 1.00023 0.95438 1.21140 0.95623 0.97890 0.99800 1.19480 0.95016 0.99306 0.95327 1.25006 0.86091 1.00421 1.07973 1.86544 1.17880 1.71085 1.61233 0.94038 0.85114 0.79223 0.75173 1.21119 0.96553 0.99827 0.95101 1.21251 0.94210 0.97243 1.00571 1.23565 0.92248 1.02570 0.98821 1.84812 1.17797 1.38688 1.69889 0.86543 0.86511 0.86789 0.88542 0.87706 0.74585 0.85314 0.85287 0.84123 0.84721 0.89192 0.75589 1.21003 1.22405 0.85627 0.84626 0.89588 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.52 8.48 88.34 0.75 1.27 16 3 N -0.33 -3.11 12.22 -165.50 -2.02 -5.13 16 4 N -0.31 -2.66 11.83 -165.50 -1.96 -4.62 16 5 C 0.18 0.60 7.54 88.34 0.67 1.26 16 6 C -0.02 0.08 4.29 -11.01 -0.05 0.03 16 7 H 0.15 -1.15 8.14 -2.39 -0.02 -1.17 16 8 C -0.12 0.73 7.38 31.12 0.23 0.96 16 9 C 0.13 -0.53 4.24 45.52 0.19 -0.34 16 10 H 0.12 -0.20 7.46 -2.39 -0.02 -0.22 16 11 N -0.71 3.23 5.35 -440.04 -2.36 0.87 16 12 C 0.52 0.25 7.82 87.66 0.69 0.94 16 13 O -0.57 -5.53 15.63 -3.02 -0.05 -5.58 16 14 C -0.10 0.41 5.83 29.10 0.17 0.58 16 15 C -0.07 -0.19 4.37 -19.86 -0.09 -0.28 16 16 C -0.11 -0.39 9.70 22.27 0.22 -0.18 16 17 C -0.13 -0.62 8.67 22.27 0.19 -0.43 16 18 C -0.09 -0.56 5.38 -19.87 -0.11 -0.67 16 19 C -0.09 -0.25 2.79 71.23 0.20 -0.05 16 20 O -0.56 -2.72 12.81 -148.98 -1.91 -4.62 16 21 Si 0.76 0.68 29.85 68.60 2.05 2.73 16 22 C -0.11 -0.66 9.69 22.27 0.22 -0.45 16 23 C -0.11 -0.47 9.70 22.27 0.22 -0.26 16 24 C -0.13 0.38 7.42 31.12 0.23 0.61 16 25 O -0.23 -0.86 10.87 -3.58 -0.04 -0.90 16 26 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.10 -0.49 8.07 -2.39 -0.02 -0.51 16 30 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.42 -3.94 8.73 -92.70 -0.81 -4.75 16 32 H 0.13 -1.10 8.08 -2.39 -0.02 -1.12 16 33 H 0.13 -1.14 8.08 -2.39 -0.02 -1.16 16 34 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 35 H 0.14 0.23 4.87 -2.91 -0.01 0.22 16 36 H 0.09 -0.05 7.96 -2.38 -0.02 -0.07 16 37 H 0.39 -1.37 8.74 -74.06 -0.65 -2.01 16 38 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 39 H -0.30 -2.26 7.05 99.48 0.70 -1.55 16 40 H 0.13 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.09 -0.03 7.78 -2.39 -0.02 -0.04 16 Total: 0.00 -28.04 369.36 -2.18 -30.22 By element: Atomic # 1 Polarization: -16.80 SS G_CDS: -0.36 Total: -17.16 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.47 Total: 4.20 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -6.34 Total: -8.88 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.99 Total: -11.10 kcal Atomic # 14 Polarization: 0.68 SS G_CDS: 2.05 Total: 2.73 kcal Total: -28.04 -2.18 -30.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12335836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.236 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds