Wall clock time and date at job start Tue Mar 9 2021 13:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35650 * 117.00606 * 2 1 4 4 C 1.40139 * 120.15564 * 180.30119 * 3 2 1 5 5 C 1.47538 * 120.19043 * 0.02562 * 4 3 2 6 6 O 1.21586 * 119.99750 * 0.25470 * 5 4 3 7 7 N 1.34768 * 119.99927 * 180.25573 * 5 4 3 8 8 C 1.46498 * 120.00297 * 179.97438 * 7 5 4 9 9 H 1.09005 * 112.84680 * 23.80437 * 8 7 5 10 10 C 1.53780 * 113.61872 * 155.00021 * 8 7 5 11 11 C 1.53780 * 87.08201 * 139.98315 * 10 8 7 12 12 H 1.09005 * 113.61320 * 89.11657 * 11 10 8 13 13 C 1.50697 * 113.61493 * 219.93489 * 11 10 8 14 14 N 1.30279 * 126.28024 * 60.02189 * 13 11 10 15 15 N 1.28666 * 109.37756 * 179.97438 * 14 13 11 16 16 C 1.30268 * 109.38510 * 0.02562 * 15 14 13 17 17 C 1.50703 * 126.28397 * 180.02562 * 16 15 14 18 18 O 1.34361 * 126.28233 * 239.71581 * 13 11 10 19 19 C 1.53781 * 87.08334 * 334.56838 * 11 10 8 20 20 C 1.39707 * 119.61729 * 180.27747 * 4 3 2 21 21 C 1.37790 * 119.90592 * 359.44149 * 20 4 3 22 22 C 1.50703 * 119.84642 * 180.28334 * 21 20 4 23 23 O 1.42896 * 109.47148 * 299.99924 * 22 21 20 24 24 Si 1.86308 * 109.46883 * 179.97438 * 22 21 20 25 25 C 1.38548 * 120.30368 * 0.25701 * 21 20 4 26 26 C 1.38051 * 120.38770 * 0.02632 * 25 21 20 27 27 H 1.08996 * 109.46762 * 300.00697 * 1 2 3 28 28 H 1.09001 * 109.46761 * 59.99929 * 1 2 3 29 29 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 30 30 H 0.97006 * 120.00261 * 0.02562 * 7 5 4 31 31 H 1.09002 * 113.61156 * 254.53280 * 10 8 7 32 32 H 1.09000 * 113.60986 * 25.35088 * 10 8 7 33 33 H 1.08996 * 109.47290 * 90.02923 * 17 16 15 34 34 H 1.09003 * 109.46583 * 210.02595 * 17 16 15 35 35 H 1.09000 * 109.47134 * 330.02057 * 17 16 15 36 36 H 1.09004 * 113.61412 * 270.88880 * 19 11 10 37 37 H 1.08999 * 113.61603 * 139.98097 * 19 11 10 38 38 H 1.08002 * 120.04882 * 179.72426 * 20 4 3 39 39 H 1.08997 * 109.47480 * 59.99937 * 22 21 20 40 40 H 0.96705 * 113.99800 * 299.99760 * 23 22 21 41 41 H 1.48496 * 109.99715 * 58.67988 * 24 22 21 42 42 H 1.48494 * 109.99770 * 179.97438 * 24 22 21 43 43 H 1.07991 * 119.80437 * 180.02562 * 25 21 20 44 44 H 1.08002 * 119.95697 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 3.4442 1.2856 -0.0064 5 6 4.2551 0.0530 -0.0137 6 8 3.7095 -1.0335 -0.0189 7 7 5.6005 0.1316 -0.0146 8 6 6.4057 -1.0923 -0.0213 9 1 5.8702 -1.9490 -0.4304 10 6 7.8106 -0.9022 -0.6172 11 6 8.3243 -1.8228 0.5024 12 1 8.3138 -2.8801 0.2375 13 6 9.6385 -1.3803 1.0924 14 7 9.8746 -0.2432 1.6828 15 7 11.1034 -0.2064 2.0625 16 6 11.6932 -1.3183 1.7268 17 6 13.1332 -1.6781 1.9876 18 8 10.7802 -2.0884 1.1112 19 6 7.0996 -1.3806 1.3205 20 6 4.0669 2.5362 -0.0004 21 6 3.3039 3.6836 0.0000 22 6 3.9770 5.0319 0.0000 23 8 4.7929 5.1570 1.1664 24 14 2.6828 6.3720 -0.0002 25 6 1.9208 3.6033 -0.0001 26 6 1.2926 2.3740 -0.0001 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 6.0358 0.9985 -0.0101 31 1 7.9221 -1.3249 -1.6157 32 1 8.1798 0.1209 -0.5469 33 1 13.2136 -2.1791 2.9522 34 1 13.4894 -2.3440 1.2015 35 1 13.7382 -0.7714 1.9974 36 1 7.2751 -0.4885 1.9218 37 1 6.6372 -2.1894 1.8863 38 1 5.1449 2.6036 -0.0008 39 1 4.5988 5.1277 -0.8902 40 1 4.3046 5.0819 1.9978 41 1 1.8082 6.2335 1.1918 42 1 3.3338 7.7067 0.0004 43 1 1.3306 4.5077 -0.0002 44 1 0.2140 2.3195 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12496546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:12 Heat of formation + Delta-G solvation = -5.951444 kcal Electronic energy + Delta-G solvation = -29706.335692 eV Core-core repulsion = 25400.990560 eV Total energy + Delta-G solvation = -4305.345132 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.33909 -41.83999 -40.79334 -39.26666 -39.19753 -37.28517 -37.23246 -34.98308 -33.69667 -32.49585 -31.81149 -29.65598 -28.52435 -26.97989 -26.91248 -26.15957 -25.24157 -23.81315 -23.42995 -22.42388 -21.54937 -20.88590 -19.43055 -18.62538 -18.52870 -18.40115 -18.12819 -17.41551 -16.97856 -16.84658 -16.45240 -16.16083 -16.10804 -15.85958 -15.82813 -15.49437 -15.30342 -14.66004 -14.52087 -14.38030 -14.26694 -13.79065 -13.67367 -13.61403 -13.55116 -13.48398 -13.35345 -13.10430 -12.99380 -12.69813 -12.43343 -12.32955 -12.22944 -12.03686 -11.93955 -11.89040 -11.67724 -11.02863 -10.56067 -10.50743 -10.27755 -10.03803 -9.28646 -4.90188 -0.26466 0.04290 0.21939 1.16924 1.22960 1.33223 1.61953 1.75793 1.99821 2.10237 2.27592 2.66967 2.75964 3.18681 3.34636 3.40771 3.46805 3.59008 3.64291 3.65330 3.71174 3.74805 3.97008 4.01981 4.16096 4.28947 4.32132 4.37910 4.38435 4.43055 4.47983 4.51381 4.60393 4.63336 4.64982 4.67778 4.69488 4.75175 4.80075 4.85681 4.93162 5.00315 5.07812 5.13166 5.28082 5.47351 5.56811 6.30379 6.48827 6.51052 7.18294 7.18753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.173 3.827 4 C -0.198 4.198 5 C 0.561 3.439 6 O -0.559 6.559 7 N -0.708 5.708 8 C 0.130 3.870 9 H 0.120 0.880 10 C -0.118 4.118 11 C -0.017 4.017 12 H 0.151 0.849 13 C 0.176 3.824 14 N -0.313 5.313 15 N -0.332 5.332 16 C 0.168 3.832 17 C -0.060 4.060 18 O -0.231 6.231 19 C -0.134 4.134 20 C -0.018 4.018 21 C -0.165 4.165 22 C -0.076 4.076 23 O -0.548 6.548 24 Si 0.765 3.235 25 C -0.042 4.042 26 C -0.212 4.212 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.411 0.589 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.386 0.614 41 H -0.280 1.280 42 H -0.307 1.307 43 H 0.158 0.842 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -0.097 -3.495 3.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.124 3.876 4 C -0.201 4.201 5 C 0.349 3.651 6 O -0.438 6.438 7 N -0.360 5.360 8 C 0.025 3.975 9 H 0.138 0.862 10 C -0.156 4.156 11 C -0.038 4.038 12 H 0.169 0.831 13 C -0.035 4.035 14 N -0.159 5.159 15 N -0.178 5.178 16 C -0.043 4.043 17 C -0.117 4.117 18 O -0.111 6.111 19 C -0.174 4.174 20 C -0.036 4.036 21 C -0.166 4.166 22 C -0.185 4.185 23 O -0.356 6.356 24 Si 0.671 3.329 25 C -0.059 4.059 26 C -0.230 4.230 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.248 0.752 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.235 0.765 41 H -0.207 1.207 42 H -0.235 1.235 43 H 0.175 0.825 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.459 0.851 -3.028 3.467 hybrid contribution 0.661 -0.946 0.959 1.501 sum -0.798 -0.095 -2.069 2.220 Atomic orbital electron populations 1.23453 0.76511 1.05508 1.02849 1.86331 1.23193 1.26282 1.86510 1.19397 0.91265 0.85595 0.91310 1.19409 0.91223 0.93974 1.15544 1.18270 0.82555 0.88640 0.75585 1.90804 1.72378 1.30076 1.50591 1.45773 1.05188 1.10115 1.74937 1.22342 0.90081 0.88915 0.96135 0.86174 1.23432 0.93004 1.00494 0.98703 1.21228 0.81601 1.03214 0.97718 0.83087 1.28231 0.89489 0.87373 0.98423 1.74242 1.08512 1.19077 1.14039 1.74367 1.00598 1.21263 1.21613 1.28998 0.96905 0.85905 0.92502 1.20706 0.79345 1.05811 1.05872 1.84812 1.19832 1.45157 1.61272 1.23574 0.93083 1.02901 0.97804 1.21094 1.00609 0.89373 0.92568 1.20173 0.93892 0.95786 1.06763 1.25159 1.02973 0.99081 0.91263 1.86587 1.37877 1.94488 1.16657 0.94229 0.77456 0.73779 0.87484 1.21271 0.93699 0.97972 0.92995 1.21477 1.01805 0.90854 1.08895 0.91070 0.90632 0.87383 0.75158 0.87246 0.88709 0.86535 0.86708 0.86514 0.89256 0.89433 0.83575 0.85298 0.76479 1.20670 1.23532 0.82525 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.46 8.57 -68.73 -0.59 -3.05 16 3 C 0.17 0.88 6.70 22.85 0.15 1.03 16 4 C -0.20 -1.03 5.89 -20.01 -0.12 -1.15 16 5 C 0.56 4.63 7.76 86.70 0.67 5.30 16 6 O -0.56 -8.90 14.76 16.93 0.25 -8.65 16 7 N -0.71 -1.23 5.30 -443.20 -2.35 -3.58 16 8 C 0.13 -0.02 4.24 45.52 0.19 0.17 16 9 H 0.12 0.17 7.46 -2.38 -0.02 0.16 16 10 C -0.12 0.41 7.38 31.12 0.23 0.64 16 11 C -0.02 0.03 4.29 -11.01 -0.05 -0.02 16 12 H 0.15 -0.96 8.14 -2.38 -0.02 -0.98 16 13 C 0.18 0.93 7.54 88.34 0.67 1.60 16 14 N -0.31 -3.36 11.84 -165.50 -1.96 -5.32 16 15 N -0.33 -3.69 12.22 -165.50 -2.02 -5.71 16 16 C 0.17 0.75 8.48 88.34 0.75 1.50 16 17 C -0.06 0.37 10.51 71.24 0.75 1.12 16 18 O -0.23 -1.17 10.87 -3.69 -0.04 -1.21 16 19 C -0.13 -0.05 7.42 31.12 0.23 0.18 16 20 C -0.02 0.00 9.09 22.52 0.20 0.20 16 21 C -0.17 0.35 5.39 -19.90 -0.11 0.24 16 22 C -0.08 0.24 2.81 71.24 0.20 0.44 16 23 O -0.55 -0.29 12.76 -148.98 -1.90 -2.19 16 24 Si 0.76 -3.25 29.77 68.60 2.04 -1.21 16 25 C -0.04 0.15 8.66 22.30 0.19 0.35 16 26 C -0.21 0.31 9.03 22.34 0.20 0.51 16 27 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 28 H 0.08 -0.42 7.66 -2.39 -0.02 -0.44 16 29 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.41 -0.93 6.76 -92.70 -0.63 -1.56 16 31 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.09 -0.19 8.07 -2.39 -0.02 -0.21 16 33 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 35 H 0.12 -0.90 8.14 -2.39 -0.02 -0.91 16 36 H 0.09 0.32 7.79 -2.38 -0.02 0.30 16 37 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.15 -0.43 6.40 -2.91 -0.02 -0.45 16 39 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 40 H 0.39 -1.73 8.70 -74.05 -0.64 -2.38 16 41 H -0.28 0.22 7.11 99.48 0.71 0.92 16 42 H -0.31 -1.37 7.11 99.48 0.71 -0.66 16 43 H 0.16 -1.38 4.85 -2.92 -0.01 -1.39 16 44 H 0.16 -1.10 6.30 -2.91 -0.02 -1.11 16 Total: 0.00 -29.41 371.91 -1.44 -30.85 By element: Atomic # 1 Polarization: -12.97 SS G_CDS: -0.16 Total: -13.12 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.28 Total: 13.21 kcal Atomic # 7 Polarization: -8.28 SS G_CDS: -6.33 Total: -14.61 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -2.28 Total: -15.11 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: 2.04 Total: -1.21 kcal Total: -29.41 -1.44 -30.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12496546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.900 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds