Wall clock time and date at job start Tue Mar 9 2021 13:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30281 * 126.28117 * 2 1 4 4 N 1.28665 * 109.38207 * 180.02562 * 3 2 1 5 5 C 1.30276 * 109.37819 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28226 * 179.97438 * 5 4 3 7 7 H 1.08996 * 112.91179 * 191.27910 * 6 5 4 8 8 C 1.53781 * 113.61490 * 322.53308 * 6 5 4 9 9 C 1.53776 * 87.08459 * 139.98029 * 8 6 5 10 10 H 1.08995 * 113.69589 * 89.12413 * 9 8 6 11 11 N 1.46504 * 113.61488 * 220.02116 * 9 8 6 12 12 C 1.34770 * 119.99716 * 252.49268 * 11 9 8 13 13 O 1.21568 * 120.00084 * 0.02562 * 12 11 9 14 14 C 1.47732 * 119.99950 * 179.97438 * 12 11 9 15 15 C 1.39629 * 120.11478 * 179.97438 * 14 12 11 16 16 C 1.37863 * 119.87710 * 179.72806 * 15 14 12 17 17 C 1.50693 * 119.94273 * 180.23480 * 16 15 14 18 18 O 1.42896 * 109.47013 * 14.99945 * 17 16 15 19 19 Si 1.86305 * 109.47059 * 134.99981 * 17 16 15 20 20 C 1.38633 * 120.11638 * 0.25427 * 16 15 14 21 21 F 1.35101 * 119.88232 * 180.02562 * 20 16 15 22 22 C 1.38681 * 120.24137 * 0.02562 * 20 16 15 23 23 C 1.37814 * 120.11770 * 359.97438 * 22 20 16 24 24 C 1.53778 * 113.61209 * 60.02725 * 6 5 4 25 25 O 1.34355 * 126.28544 * 180.28959 * 2 1 3 26 26 H 1.09009 * 109.47094 * 89.97219 * 1 2 3 27 27 H 1.09000 * 109.47070 * 209.97349 * 1 2 3 28 28 H 1.09007 * 109.47360 * 329.97601 * 1 2 3 29 29 H 1.08999 * 113.61667 * 25.42654 * 8 6 5 30 30 H 1.09003 * 113.61252 * 254.52985 * 8 6 5 31 31 H 0.96997 * 119.99805 * 72.49325 * 11 9 8 32 32 H 1.08002 * 120.06687 * 0.02562 * 15 14 12 33 33 H 1.08994 * 109.47191 * 254.99904 * 17 16 15 34 34 H 0.96703 * 114.00490 * 60.00274 * 18 17 16 35 35 H 1.48498 * 109.99854 * 58.68082 * 19 17 16 36 36 H 1.48506 * 109.99997 * 180.02562 * 19 17 16 37 37 H 1.07994 * 119.94666 * 179.97438 * 22 20 16 38 38 H 1.08005 * 120.06616 * 180.02562 * 23 22 20 39 39 H 1.09004 * 113.61424 * 105.47248 * 24 6 5 40 40 H 1.09005 * 113.61820 * 334.56785 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5654 -0.6253 -0.0015 6 6 4.8176 -1.4638 -0.0029 7 1 4.6223 -2.5178 -0.1998 8 6 5.9511 -0.8766 -0.8604 9 6 6.9158 -1.3183 0.2527 10 1 7.2950 -2.3323 0.1269 11 7 7.9751 -0.3453 0.5315 12 6 9.2421 -0.6006 0.1495 13 8 9.5058 -1.6380 -0.4269 14 6 10.3101 0.3807 0.4300 15 6 11.6237 0.1184 0.0358 16 6 12.6156 1.0401 0.2951 17 6 14.0327 0.7609 -0.1344 18 8 14.0424 -0.3166 -1.0730 19 14 14.7520 2.2841 -0.9302 20 6 12.3116 2.2231 0.9507 21 9 13.2873 3.1233 1.2020 22 6 11.0097 2.4861 1.3496 23 6 10.0105 1.5716 1.0954 24 6 5.7219 -1.2223 1.2173 25 8 2.3021 -1.0830 -0.0055 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 5.8910 0.2049 -0.9824 30 1 6.1024 -1.4022 -1.8033 31 1 7.7645 0.4825 0.9910 32 1 11.8614 -0.8027 -0.4757 33 1 14.6296 0.4896 0.7363 34 1 13.5300 -0.1445 -1.8748 35 1 14.7183 3.4203 0.0254 36 1 16.1494 2.0216 -1.3589 37 1 10.7784 3.4090 1.8604 38 1 8.9968 1.7774 1.4061 39 1 5.6882 -2.0270 1.9518 40 1 5.5992 -0.2353 1.6633 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12496548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:15 Heat of formation + Delta-G solvation = -7.918132 kcal Electronic energy + Delta-G solvation = -27416.453059 eV Core-core repulsion = 23115.788480 eV Total energy + Delta-G solvation = -4300.664579 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.41900 -45.30443 -41.59130 -40.34880 -39.17669 -37.68671 -37.25017 -35.06647 -33.66909 -32.63769 -31.90640 -29.62524 -27.33815 -26.86840 -26.76904 -25.07750 -23.69805 -23.26927 -23.17321 -21.54817 -20.90052 -19.24642 -18.85662 -18.57882 -18.46605 -17.90310 -17.72698 -17.24646 -17.12022 -16.45806 -16.16684 -16.01625 -15.79234 -15.61701 -15.48003 -15.12883 -14.78822 -14.61119 -14.25905 -14.03167 -13.76811 -13.74103 -13.62609 -13.58776 -13.45471 -13.29953 -12.96475 -12.77855 -12.67523 -12.35151 -12.31792 -11.91343 -11.85835 -11.43538 -11.14052 -10.90355 -10.46820 -10.22326 -10.02638 -9.70381 -5.04144 -0.50229 0.03630 0.07764 1.20442 1.21397 1.26359 1.59243 1.62286 1.94374 2.05508 2.59153 2.79023 3.00095 3.20929 3.26921 3.34627 3.38627 3.49646 3.62821 3.67748 3.71413 3.75117 4.00448 4.03944 4.10248 4.31799 4.35289 4.42478 4.50829 4.53676 4.61187 4.65364 4.68780 4.70575 4.80878 4.84048 4.91066 4.91667 5.01420 5.03150 5.08155 5.13734 5.45671 5.61987 6.43177 6.62062 7.10019 7.21892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.020 4.020 7 H 0.149 0.851 8 C -0.133 4.133 9 C 0.129 3.871 10 H 0.121 0.879 11 N -0.701 5.701 12 C 0.564 3.436 13 O -0.570 6.570 14 C -0.151 4.151 15 C -0.027 4.027 16 C -0.157 4.157 17 C -0.069 4.069 18 O -0.550 6.550 19 Si 0.760 3.240 20 C 0.105 3.895 21 F -0.131 7.131 22 C -0.147 4.147 23 C -0.046 4.046 24 C -0.119 4.119 25 O -0.232 6.232 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.415 0.585 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.397 0.603 35 H -0.257 1.257 36 H -0.304 1.304 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 0.115 0.846 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.167 0.833 8 C -0.172 4.172 9 C 0.024 3.976 10 H 0.139 0.861 11 N -0.353 5.353 12 C 0.353 3.647 13 O -0.450 6.450 14 C -0.154 4.154 15 C -0.045 4.045 16 C -0.159 4.159 17 C -0.179 4.179 18 O -0.358 6.358 19 Si 0.664 3.336 20 C 0.085 3.915 21 F -0.110 7.110 22 C -0.166 4.166 23 C -0.064 4.064 24 C -0.157 4.157 25 O -0.112 6.112 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.254 0.746 32 H 0.164 0.836 33 H 0.132 0.868 34 H 0.247 0.753 35 H -0.183 1.183 36 H -0.232 1.232 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.125 0.875 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.497 1.012 0.940 5.668 hybrid contribution -0.172 -0.958 0.701 1.199 sum -5.669 0.055 1.641 5.902 Atomic orbital electron populations 1.20697 0.77056 1.07245 1.06812 1.28958 0.99335 0.78877 0.97216 1.74373 0.96562 1.27008 1.19799 1.74219 1.12636 1.10177 1.18574 1.28262 0.85381 0.91421 0.98504 1.21247 0.82698 0.99114 1.01006 0.83334 1.23578 0.92032 1.02733 0.98848 1.22376 0.85144 0.94560 0.95483 0.86069 1.45743 1.06570 1.23283 1.59681 1.18315 0.83039 0.85573 0.77817 1.90801 1.83131 1.27951 1.43091 1.19978 0.93865 0.96633 1.04909 1.20915 0.90178 0.98199 0.95257 1.20273 0.98001 0.94345 1.03238 1.25041 0.95207 1.01289 0.96336 1.86475 1.75827 1.40734 1.32787 0.94352 0.79875 0.75075 0.84254 1.18018 0.86637 0.87270 0.99567 1.91556 1.61067 1.66469 1.91903 1.21377 0.90090 1.02638 1.02462 1.21484 1.00797 0.90587 0.93541 1.23451 0.91404 1.05044 0.95832 1.84811 1.17816 1.38690 1.69871 0.86581 0.86825 0.86529 0.88770 0.89289 0.74598 0.83620 0.86789 0.75252 1.18252 1.23204 0.81442 0.81244 0.87498 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.47 10.51 71.23 0.75 1.22 16 2 C 0.17 0.39 8.48 88.34 0.75 1.14 16 3 N -0.33 -2.78 12.22 -165.51 -2.02 -4.81 16 4 N -0.31 -2.29 11.83 -165.50 -1.96 -4.25 16 5 C 0.18 0.40 7.53 88.34 0.67 1.07 16 6 C -0.02 0.10 4.29 -11.01 -0.05 0.06 16 7 H 0.15 -1.36 8.14 -2.39 -0.02 -1.38 16 8 C -0.13 0.55 7.42 31.12 0.23 0.78 16 9 C 0.13 -0.65 4.24 45.52 0.19 -0.46 16 10 H 0.12 -0.38 7.46 -2.39 -0.02 -0.40 16 11 N -0.70 3.22 5.31 -443.02 -2.35 0.87 16 12 C 0.56 0.87 7.77 86.75 0.67 1.55 16 13 O -0.57 -5.42 15.94 -3.93 -0.06 -5.48 16 14 C -0.15 0.13 5.87 -20.09 -0.12 0.01 16 15 C -0.03 -0.03 8.78 22.52 0.20 0.17 16 16 C -0.16 -0.09 5.13 -19.86 -0.10 -0.19 16 17 C -0.07 -0.08 2.96 71.23 0.21 0.13 16 18 O -0.55 -0.83 11.64 -148.98 -1.73 -2.57 16 19 Si 0.76 0.27 30.81 68.60 2.11 2.38 16 20 C 0.10 0.01 6.67 22.47 0.15 0.16 16 21 F -0.13 -0.45 12.81 44.97 0.58 0.13 16 22 C -0.15 0.66 10.01 22.28 0.22 0.88 16 23 C -0.05 0.28 9.54 22.52 0.21 0.49 16 24 C -0.12 0.88 7.38 31.12 0.23 1.11 16 25 O -0.23 -0.66 10.87 -3.55 -0.04 -0.69 16 26 H 0.12 -1.22 8.14 -2.38 -0.02 -1.24 16 27 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 28 H 0.12 -1.08 8.14 -2.38 -0.02 -1.10 16 29 H 0.09 -0.16 7.78 -2.39 -0.02 -0.18 16 30 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.42 -4.06 6.76 -92.71 -0.63 -4.68 16 32 H 0.15 0.44 6.66 -2.91 -0.02 0.42 16 33 H 0.11 0.27 7.96 -2.39 -0.02 0.25 16 34 H 0.40 -2.53 8.43 -74.06 -0.62 -3.15 16 35 H -0.26 -1.24 5.27 99.48 0.52 -0.72 16 36 H -0.30 -2.36 7.11 99.48 0.71 -1.66 16 37 H 0.17 -1.48 8.06 -2.91 -0.02 -1.50 16 38 H 0.17 -2.20 6.40 -2.91 -0.02 -2.22 16 39 H 0.11 -1.06 8.14 -2.38 -0.02 -1.08 16 40 H 0.10 -0.65 8.07 -2.38 -0.02 -0.67 16 Total: 0.00 -25.78 346.83 -1.53 -27.31 By element: Atomic # 1 Polarization: -20.74 SS G_CDS: -0.27 Total: -21.02 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 4.22 Total: 8.12 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -6.33 Total: -8.18 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -1.84 Total: -8.74 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.58 Total: 0.13 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.11 Total: 2.38 kcal Total: -25.78 -1.53 -27.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12496548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -25.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds