Wall clock time and date at job start Tue Mar 9 2021 13:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30273 * 126.28707 * 2 1 4 4 N 1.28667 * 109.38092 * 180.02562 * 3 2 1 5 5 C 1.30273 * 109.38107 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28079 * 179.97438 * 5 4 3 7 7 H 1.09000 * 112.85150 * 168.82644 * 6 5 4 8 8 C 1.53789 * 113.61057 * 300.02160 * 6 5 4 9 9 C 1.53784 * 87.08021 * 139.98321 * 8 6 5 10 10 H 1.08998 * 113.61699 * 89.11698 * 9 8 6 11 11 N 1.46497 * 113.61208 * 219.93038 * 9 8 6 12 12 C 1.34776 * 119.99997 * 204.99547 * 11 9 8 13 13 O 1.21279 * 119.99890 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99729 * 180.02562 * 12 11 9 15 15 N 1.46501 * 109.46803 * 180.02562 * 14 12 11 16 16 C 1.35041 * 125.92645 * 124.71735 * 15 14 12 17 17 C 1.35091 * 107.97938 * 179.89464 * 16 15 14 18 18 C 1.50694 * 126.07729 * 180.13859 * 17 16 15 19 19 O 1.42894 * 109.47098 * 105.23230 * 18 17 16 20 20 Si 1.86307 * 109.47237 * 345.23533 * 18 17 16 21 21 C 1.40849 * 107.84468 * 0.37130 * 17 16 15 22 22 C 1.48420 * 126.03478 * 179.75237 * 21 17 16 23 23 C 1.39323 * 120.11646 * 316.94190 * 22 21 17 24 24 C 1.38025 * 119.87294 * 179.74237 * 23 22 21 25 25 C 1.38312 * 120.12257 * 0.53547 * 24 23 22 26 26 C 1.38321 * 120.24093 * 359.72019 * 25 24 23 27 27 C 1.38019 * 120.11992 * 0.02562 * 26 25 24 28 28 N 1.31615 * 107.92767 * 359.76932 * 21 17 16 29 29 C 1.53784 * 87.08097 * 334.56430 * 9 8 6 30 30 O 1.34353 * 107.43700 * 0.02562 * 5 4 3 31 31 H 1.08997 * 109.46834 * 90.02300 * 1 2 3 32 32 H 1.08997 * 109.47024 * 210.02592 * 1 2 3 33 33 H 1.08999 * 109.46667 * 330.03051 * 1 2 3 34 34 H 1.09004 * 113.61041 * 254.53018 * 8 6 5 35 35 H 1.08994 * 113.61575 * 25.35052 * 8 6 5 36 36 H 0.96999 * 120.00103 * 25.00745 * 11 9 8 37 37 H 1.08993 * 109.47474 * 300.00397 * 14 12 11 38 38 H 1.09007 * 109.46891 * 60.00902 * 14 12 11 39 39 H 1.08004 * 126.01138 * 0.02562 * 16 15 14 40 40 H 1.08999 * 109.47320 * 225.23645 * 18 17 16 41 41 H 0.96706 * 114.00407 * 299.99829 * 19 18 17 42 42 H 1.48499 * 110.00119 * 179.97438 * 20 18 17 43 43 H 1.48504 * 109.99528 * 301.31680 * 20 18 17 44 44 H 1.08001 * 120.06245 * 359.97438 * 23 22 21 45 45 H 1.08004 * 119.93420 * 180.25503 * 24 23 22 46 46 H 1.08002 * 119.88296 * 179.74100 * 25 24 23 47 47 H 1.08003 * 119.93871 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.06324 * 179.97438 * 27 26 25 49 49 H 1.08995 * 113.61614 * 270.88825 * 29 9 8 50 50 H 1.09005 * 113.60961 * 139.98144 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6759 -0.0005 5 6 3.5653 -0.6256 -0.0004 6 6 4.8176 -1.4641 -0.0014 7 1 4.6212 -2.5184 0.1936 8 6 5.7205 -1.2212 -1.2224 9 6 6.9155 -1.3184 -0.2593 10 1 7.2939 -2.3329 -0.1339 11 7 7.9754 -0.3466 -0.5393 12 6 9.2426 -0.6031 -0.1588 13 8 9.5055 -1.6387 0.4150 14 6 10.3327 0.3969 -0.4464 15 7 11.6088 -0.1121 0.0623 16 6 12.7415 -0.2705 -0.6557 17 6 13.6932 -0.7593 0.1692 18 6 15.1147 -1.0848 -0.2104 19 8 15.9880 -0.0786 0.3062 20 14 15.2640 -1.1432 -2.0665 21 6 13.1190 -0.9156 1.4458 22 6 13.8074 -1.4306 2.6557 23 6 14.6446 -2.5405 2.5644 24 6 15.2864 -3.0120 3.6917 25 6 15.0910 -2.3916 4.9123 26 6 14.2567 -1.2926 5.0096 27 6 13.6140 -0.8096 3.8877 28 7 11.8642 -0.5246 1.3763 29 6 5.9521 -0.8780 0.8555 30 8 2.3021 -1.0832 -0.0002 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3632 0.8903 0.5134 34 1 5.6859 -2.0250 -1.9578 35 1 5.5962 -0.2342 -1.6679 36 1 7.7651 0.4816 -0.9985 37 1 10.4075 0.5536 -1.5225 38 1 10.0971 1.3420 0.0429 39 1 12.8655 -0.0440 -1.7044 40 1 15.3895 -2.0535 0.2069 41 1 15.8013 0.8112 -0.0232 42 1 16.6616 -1.4628 -2.4538 43 1 14.3374 -2.1639 -2.6186 44 1 14.7940 -3.0287 1.6127 45 1 15.9389 -3.8698 3.6213 46 1 15.5919 -2.7664 5.7927 47 1 14.1073 -0.8122 5.9653 48 1 12.9625 0.0483 3.9648 49 1 5.8921 0.2033 0.9789 50 1 6.1045 -1.4048 1.7976 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12622748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:18 Heat of formation + Delta-G solvation = 110.026187 kcal Electronic energy + Delta-G solvation = -35373.449474 eV Core-core repulsion = 30565.210220 eV Total energy + Delta-G solvation = -4808.239254 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.163 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.34569 -42.48068 -41.21853 -39.89459 -39.45599 -37.65028 -37.29059 -35.03469 -34.72022 -33.60582 -32.31781 -31.96853 -31.42102 -29.81438 -28.72664 -26.93236 -26.78907 -25.94740 -24.41769 -23.73739 -23.50134 -23.27170 -21.86928 -21.52286 -21.13647 -20.76142 -18.81661 -18.55758 -18.51714 -18.32588 -17.68719 -17.47453 -17.05403 -16.71467 -16.33681 -16.26334 -16.23527 -15.67505 -15.61715 -15.49366 -15.42038 -15.21693 -14.72599 -14.37201 -14.34368 -14.25545 -14.16680 -13.95932 -13.83264 -13.67798 -13.62562 -13.61729 -13.47602 -13.20532 -13.00438 -12.74072 -12.48127 -12.40931 -12.37666 -12.15204 -11.96931 -11.91336 -11.86866 -11.71631 -11.25770 -10.61905 -10.50859 -10.21649 -10.17073 -9.91227 -9.76556 -9.31429 -5.00855 0.03578 0.09610 0.42915 0.82258 1.16392 1.22126 1.31955 1.42299 1.46333 1.63993 1.76636 2.04045 2.10995 2.74459 2.85872 3.16320 3.32291 3.35328 3.45590 3.61384 3.62576 3.65502 3.68967 3.75066 3.94758 3.97519 3.99689 4.04081 4.16992 4.19090 4.22970 4.28222 4.38222 4.44106 4.46402 4.51124 4.51561 4.53832 4.59389 4.63801 4.67391 4.77543 4.77801 4.83830 4.84305 4.96171 5.00102 5.06006 5.06975 5.27918 5.42952 5.52900 5.53988 5.59058 5.94024 6.00364 6.44472 6.60669 6.91216 7.14055 7.17800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.330 5.330 4 N -0.309 5.309 5 C 0.175 3.825 6 C -0.021 4.021 7 H 0.145 0.855 8 C -0.113 4.113 9 C 0.133 3.867 10 H 0.111 0.889 11 N -0.702 5.702 12 C 0.498 3.502 13 O -0.564 6.564 14 C 0.108 3.892 15 N -0.359 5.359 16 C 0.080 3.920 17 C -0.270 4.270 18 C -0.044 4.044 19 O -0.558 6.558 20 Si 0.801 3.199 21 C 0.106 3.894 22 C -0.024 4.024 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.110 4.110 28 N -0.293 5.293 29 C -0.134 4.134 30 O -0.232 6.232 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.422 0.578 37 H 0.184 0.816 38 H 0.142 0.858 39 H 0.229 0.771 40 H 0.092 0.908 41 H 0.391 0.609 42 H -0.301 1.301 43 H -0.284 1.284 44 H 0.123 0.877 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.118 0.882 49 H 0.095 0.905 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 2.681 -6.992 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.155 5.155 5 C -0.036 4.036 6 C -0.042 4.042 7 H 0.162 0.838 8 C -0.151 4.151 9 C 0.027 3.973 10 H 0.129 0.871 11 N -0.355 5.355 12 C 0.283 3.717 13 O -0.441 6.441 14 C -0.015 4.015 15 N -0.141 5.141 16 C -0.065 4.065 17 C -0.282 4.282 18 C -0.153 4.153 19 O -0.365 6.365 20 Si 0.706 3.294 21 C -0.059 4.059 22 C -0.026 4.026 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.129 4.129 28 N -0.114 5.114 29 C -0.174 4.174 30 O -0.112 6.112 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.260 0.740 37 H 0.201 0.799 38 H 0.160 0.840 39 H 0.245 0.755 40 H 0.109 0.891 41 H 0.241 0.759 42 H -0.228 1.228 43 H -0.211 1.211 44 H 0.141 0.859 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.161 0.839 48 H 0.136 0.864 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.851 2.470 -6.414 8.413 hybrid contribution -0.108 -1.347 0.420 1.416 sum -4.959 1.122 -5.995 7.860 Atomic orbital electron populations 1.20707 0.76962 1.07199 1.06941 1.28988 0.99366 0.78833 0.97137 1.74371 0.96524 1.26984 1.19813 1.74218 1.12675 1.10084 1.18505 1.28211 0.85352 0.91432 0.98641 1.21230 0.82819 0.98904 1.01218 0.83771 1.23413 0.91002 1.05197 0.95524 1.22224 0.85407 0.94387 0.95293 0.87134 1.45709 1.06242 1.23413 1.60143 1.21146 0.84610 0.87647 0.78254 1.90825 1.82942 1.28590 1.41784 1.22042 0.77831 0.96500 1.05153 1.48160 1.09858 1.49669 1.06385 1.22896 0.84961 0.99002 0.99652 1.20649 0.98993 1.15475 0.93052 1.24739 0.85138 0.93217 1.12236 1.86478 1.55897 1.20543 1.73626 0.94086 0.77187 0.86700 0.71451 1.20822 0.91204 0.99477 0.94434 1.17978 0.97536 0.96365 0.90735 1.21243 0.96624 0.95621 0.99388 1.21377 0.99761 1.00741 0.92399 1.21563 0.98075 0.95595 0.98479 1.21383 0.96990 0.97129 0.98772 1.21276 0.99501 1.00050 0.92117 1.77706 1.15436 1.19800 0.98490 1.23569 0.92509 1.02646 0.98662 1.84813 1.17802 1.38739 1.69879 0.86315 0.86931 0.86550 0.87538 0.87925 0.73981 0.79909 0.84028 0.75467 0.89050 0.75936 1.22844 1.21131 0.85913 0.83755 0.83493 0.83860 0.86370 0.88671 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.45 10.51 71.24 0.75 1.20 16 2 C 0.17 0.49 8.48 88.34 0.75 1.23 16 3 N -0.33 -2.96 12.22 -165.50 -2.02 -4.99 16 4 N -0.31 -2.49 11.83 -165.51 -1.96 -4.45 16 5 C 0.18 0.57 7.53 88.34 0.67 1.23 16 6 C -0.02 0.08 4.29 -11.01 -0.05 0.03 16 7 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 8 C -0.11 0.81 7.38 31.12 0.23 1.04 16 9 C 0.13 -0.55 4.24 45.52 0.19 -0.35 16 10 H 0.11 -0.07 7.46 -2.39 -0.02 -0.09 16 11 N -0.70 4.35 5.36 -440.03 -2.36 1.99 16 12 C 0.50 -0.01 7.86 87.66 0.69 0.68 16 13 O -0.56 -6.98 15.30 -3.03 -0.05 -7.02 16 14 C 0.11 -0.79 6.99 85.63 0.60 -0.19 16 15 N -0.36 -0.78 3.40 -351.89 -1.20 -1.98 16 16 C 0.08 -0.14 9.96 83.47 0.83 0.69 16 17 C -0.27 -1.23 5.35 -19.95 -0.11 -1.33 16 18 C -0.04 -0.11 2.52 71.23 0.18 0.06 16 19 O -0.56 -1.99 12.88 -148.98 -1.92 -3.91 16 20 Si 0.80 -2.34 30.74 68.60 2.11 -0.24 16 21 C 0.11 1.21 6.66 42.53 0.28 1.49 16 22 C -0.02 -0.29 5.74 -20.04 -0.12 -0.41 16 23 C -0.11 -1.08 8.88 22.48 0.20 -0.88 16 24 C -0.12 -0.82 10.03 22.24 0.22 -0.59 16 25 C -0.12 -0.63 10.04 22.31 0.22 -0.41 16 26 C -0.12 -0.86 10.03 22.24 0.22 -0.63 16 27 C -0.11 -1.18 9.78 22.48 0.22 -0.96 16 28 N -0.29 -3.53 11.67 -48.16 -0.56 -4.09 16 29 C -0.13 0.28 7.42 31.12 0.23 0.51 16 30 O -0.23 -0.85 10.87 -3.59 -0.04 -0.89 16 31 H 0.12 -1.26 8.14 -2.39 -0.02 -1.28 16 32 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 33 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.10 -0.73 8.07 -2.39 -0.02 -0.75 16 36 H 0.42 -5.44 8.73 -92.71 -0.81 -6.25 16 37 H 0.18 -3.37 8.07 -2.39 -0.02 -3.39 16 38 H 0.14 -1.62 8.14 -2.38 -0.02 -1.64 16 39 H 0.23 -3.00 6.40 -2.91 -0.02 -3.01 16 40 H 0.09 0.53 5.57 -2.39 -0.01 0.52 16 41 H 0.39 -2.08 8.70 -74.05 -0.64 -2.73 16 42 H -0.30 -1.46 7.11 99.48 0.71 -0.76 16 43 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 44 H 0.12 1.00 6.24 -2.91 -0.02 0.98 16 45 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 46 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 47 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 48 H 0.12 1.23 8.06 -2.91 -0.02 1.20 16 49 H 0.09 0.00 7.78 -2.39 -0.02 -0.02 16 50 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 Total: 0.00 -42.02 428.42 -2.17 -44.19 By element: Atomic # 1 Polarization: -20.63 SS G_CDS: -0.39 Total: -21.02 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.22 Total: 2.41 kcal Atomic # 7 Polarization: -5.42 SS G_CDS: -8.10 Total: -13.51 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -2.00 Total: -11.82 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.11 Total: -0.24 kcal Total: -42.02 -2.17 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12622748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.218 kcal (2) G-P(sol) polarization free energy of solvation -42.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds