Wall clock time and date at job start Tue Mar 9 2021 13:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30275 * 126.27759 * 2 1 4 4 N 1.28667 * 109.37455 * 179.73151 * 3 2 1 5 5 C 1.30263 * 109.38304 * 0.44690 * 4 3 2 6 6 C 1.50709 * 126.28049 * 179.82451 * 5 4 3 7 7 H 1.09007 * 112.84581 * 190.88537 * 6 5 4 8 8 C 1.53777 * 113.68983 * 322.15207 * 6 5 4 9 9 C 1.53782 * 87.07853 * 139.99401 * 8 6 5 10 10 H 1.09002 * 113.69282 * 89.12621 * 9 8 6 11 11 N 1.46506 * 113.61543 * 220.02226 * 9 8 6 12 12 C 1.34777 * 119.99873 * 252.49944 * 11 9 8 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 9 14 14 C 1.47656 * 120.00093 * 179.97438 * 12 11 9 15 15 C 1.40169 * 119.96879 * 0.02562 * 14 12 11 16 16 C 1.36357 * 120.66373 * 179.97438 * 15 14 12 17 17 C 1.39329 * 120.23473 * 359.97438 * 16 15 14 18 18 N 1.37409 * 133.24659 * 179.97438 * 17 16 15 19 19 C 1.36868 * 109.97851 * 180.02562 * 18 17 16 20 20 C 1.34190 * 109.96679 * 359.97438 * 19 18 17 21 21 C 1.50703 * 126.53675 * 180.02562 * 20 19 18 22 22 O 1.42899 * 109.46796 * 254.97041 * 21 20 19 23 23 Si 1.86300 * 109.47286 * 14.97094 * 21 20 19 24 24 C 1.40902 * 119.64846 * 0.02562 * 17 16 15 25 25 C 1.39186 * 119.97063 * 179.72204 * 14 12 11 26 26 C 1.53778 * 113.61480 * 59.69235 * 6 5 4 27 27 O 1.34356 * 126.28153 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46794 * 269.99109 * 1 2 3 29 29 H 1.08989 * 109.47225 * 29.99838 * 1 2 3 30 30 H 1.09006 * 109.46686 * 150.00037 * 1 2 3 31 31 H 1.09000 * 113.61314 * 25.45056 * 8 6 5 32 32 H 1.09002 * 113.61704 * 254.54119 * 8 6 5 33 33 H 0.96995 * 120.00050 * 72.22058 * 11 9 8 34 34 H 1.07995 * 119.66817 * 359.97438 * 15 14 12 35 35 H 1.07997 * 119.87685 * 180.02562 * 16 15 14 36 36 H 0.97000 * 125.00526 * 0.04033 * 18 17 16 37 37 H 1.07998 * 125.01081 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.46784 * 134.97510 * 21 20 19 39 39 H 0.96706 * 114.00006 * 60.00390 * 22 21 20 40 40 H 1.48499 * 109.99909 * 58.68480 * 23 21 20 41 41 H 1.48497 * 109.99712 * 179.97438 * 23 21 20 42 42 H 1.07990 * 120.30875 * 0.02562 * 25 14 12 43 43 H 1.08997 * 113.61430 * 105.38564 * 26 6 5 44 44 H 1.08998 * 113.68980 * 334.49289 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5654 -0.6253 -0.0001 6 6 4.8178 -1.4636 -0.0002 7 1 4.6213 -2.5179 -0.1953 8 6 5.9523 -0.8794 -0.8581 9 6 6.9159 -1.3200 0.2564 10 1 7.2940 -2.3349 0.1326 11 7 7.9761 -0.3478 0.5340 12 6 9.2430 -0.6052 0.1532 13 8 9.5062 -1.6444 -0.4203 14 6 10.3115 0.3749 0.4324 15 6 10.0075 1.5726 1.0942 16 6 10.9832 2.4874 1.3597 17 6 12.2995 2.2409 0.9752 18 7 13.4667 2.9550 1.1015 19 6 14.5044 2.2571 0.5453 20 6 14.0596 1.0920 0.0498 21 6 14.8850 0.0378 -0.6421 22 8 14.6326 0.0822 -2.0479 23 14 16.6928 0.3574 -0.3252 24 6 12.6180 1.0407 0.3093 25 6 11.6207 0.1059 0.0440 26 6 5.7216 -1.2210 1.2201 27 8 2.3021 -1.0831 -0.0005 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5139 31 1 5.8935 0.2020 -0.9821 32 1 6.1036 -1.4069 -1.7999 33 1 7.7655 0.4829 0.9883 34 1 8.9904 1.7729 1.3968 35 1 10.7349 3.4059 1.8707 36 1 13.5437 3.8252 1.5230 37 1 15.5299 2.5940 0.5111 38 1 14.6165 -0.9453 -0.2556 39 1 14.8490 0.9299 -2.4598 40 1 16.9623 0.3455 1.1350 41 1 17.5173 -0.6758 -1.0018 42 1 11.8602 -0.8175 -0.4621 43 1 5.6865 -2.0243 1.9560 44 1 5.6005 -0.2335 1.6653 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13287722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:48 Heat of formation + Delta-G solvation = 56.089409 kcal Electronic energy + Delta-G solvation = -29713.124504 eV Core-core repulsion = 25407.273665 eV Total energy + Delta-G solvation = -4305.850839 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.32760 -42.45398 -41.28687 -39.66120 -37.92065 -37.39748 -37.27131 -35.00387 -33.61100 -33.25184 -30.94741 -30.51173 -29.53119 -26.93977 -26.90698 -26.46172 -24.98763 -23.70247 -23.47680 -23.19059 -21.61096 -21.05338 -20.62075 -19.29514 -18.65167 -18.50764 -18.38256 -17.54330 -17.49023 -16.97649 -16.47669 -16.30612 -16.10419 -15.95244 -15.55899 -15.50327 -15.13364 -14.98682 -14.78008 -14.68079 -14.26878 -14.07385 -13.79531 -13.73824 -13.66456 -13.62976 -13.56548 -13.44411 -12.98565 -12.72265 -12.62039 -12.36677 -12.33754 -12.18910 -11.95541 -11.90961 -11.88399 -11.09023 -10.80214 -10.49311 -10.32227 -10.18688 -9.32954 -8.80329 -5.00377 -0.16609 0.05461 0.20124 1.18212 1.24052 1.36200 1.53412 1.71385 1.81217 2.03584 2.09085 2.14257 2.76799 2.86704 3.18973 3.35044 3.47747 3.61407 3.64436 3.65965 3.71105 3.74098 3.86770 3.92947 4.01026 4.14099 4.29962 4.37085 4.38813 4.45772 4.47644 4.52939 4.56710 4.60669 4.61343 4.65685 4.68976 4.78201 4.80413 4.86548 4.99905 5.01615 5.08423 5.26590 5.32850 5.43816 5.51658 5.58305 5.98571 6.46368 6.60711 6.88057 7.13993 7.19789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.018 4.018 7 H 0.149 0.851 8 C -0.134 4.134 9 C 0.127 3.873 10 H 0.117 0.883 11 N -0.702 5.702 12 C 0.564 3.436 13 O -0.584 6.584 14 C -0.180 4.180 15 C -0.069 4.069 16 C -0.126 4.126 17 C 0.110 3.890 18 N -0.572 5.572 19 C 0.087 3.913 20 C -0.227 4.227 21 C -0.053 4.053 22 O -0.565 6.565 23 Si 0.811 3.189 24 C -0.129 4.129 25 C -0.023 4.023 26 C -0.116 4.116 27 O -0.231 6.231 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.415 0.585 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.439 0.561 37 H 0.221 0.779 38 H 0.084 0.916 39 H 0.393 0.607 40 H -0.279 1.279 41 H -0.307 1.307 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 6.168 3.934 7.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.038 4.038 7 H 0.167 0.833 8 C -0.173 4.173 9 C 0.022 3.978 10 H 0.135 0.865 11 N -0.353 5.353 12 C 0.354 3.646 13 O -0.466 6.466 14 C -0.184 4.184 15 C -0.089 4.089 16 C -0.146 4.146 17 C 0.000 4.000 18 N -0.175 5.175 19 C -0.040 4.040 20 C -0.234 4.234 21 C -0.162 4.162 22 O -0.373 6.373 23 Si 0.715 3.285 24 C -0.134 4.134 25 C -0.043 4.043 26 C -0.155 4.155 27 O -0.111 6.111 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.253 0.747 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.281 0.719 37 H 0.237 0.763 38 H 0.102 0.898 39 H 0.243 0.757 40 H -0.206 1.206 41 H -0.236 1.236 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.532 5.930 4.052 7.202 hybrid contribution -1.155 -1.190 0.205 1.670 sum -0.623 4.741 4.256 6.402 Atomic orbital electron populations 1.20707 0.76916 1.07224 1.06916 1.28994 0.99373 0.78857 0.97130 1.74371 0.96501 1.27025 1.19834 1.74223 1.12698 1.10178 1.18513 1.28197 0.85362 0.91395 0.98601 1.21210 0.82690 0.99107 1.00801 0.83297 1.23577 0.92270 1.02668 0.98805 1.22371 0.85263 0.94511 0.95692 0.86486 1.45709 1.06443 1.23025 1.60143 1.18468 0.83265 0.85578 0.77328 1.90760 1.83420 1.28477 1.43903 1.19583 0.93051 0.97516 1.08267 1.20871 1.00501 0.91318 0.96198 1.20056 0.88585 1.01978 1.03993 1.18619 0.89211 0.92237 0.99900 1.41791 1.04801 1.20127 1.50811 1.22250 0.94449 0.91169 0.96165 1.20860 0.92310 0.99399 1.10823 1.24756 1.10779 0.97912 0.82720 1.86487 1.90140 1.40998 1.19656 0.94040 0.70021 0.86661 0.77734 1.19227 0.94235 0.95550 1.04340 1.20604 0.91213 0.97551 0.94900 1.23430 0.91190 1.05076 0.95789 1.84812 1.17733 1.38686 1.69876 0.86361 0.86541 0.86874 0.88865 0.89564 0.74675 0.82549 0.82234 0.71938 0.76272 0.89830 0.75696 1.20612 1.23570 0.87483 0.87402 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.41 10.51 71.24 0.75 1.15 16 2 C 0.17 0.63 8.48 88.34 0.75 1.38 16 3 N -0.33 -3.34 12.22 -165.50 -2.02 -5.36 16 4 N -0.31 -2.97 11.85 -165.50 -1.96 -4.93 16 5 C 0.18 0.81 7.54 88.34 0.67 1.48 16 6 C -0.02 0.03 4.29 -11.01 -0.05 -0.01 16 7 H 0.15 -0.93 8.14 -2.38 -0.02 -0.95 16 8 C -0.13 -0.01 7.42 31.12 0.23 0.22 16 9 C 0.13 -0.02 4.24 45.52 0.19 0.17 16 10 H 0.12 0.24 7.46 -2.39 -0.02 0.22 16 11 N -0.70 -0.96 5.30 -443.07 -2.35 -3.31 16 12 C 0.56 5.17 7.76 86.73 0.67 5.85 16 13 O -0.58 -10.35 15.93 -3.96 -0.06 -10.42 16 14 C -0.18 -1.29 5.87 -20.09 -0.12 -1.41 16 15 C -0.07 0.01 9.46 22.30 0.21 0.22 16 16 C -0.13 0.24 10.00 22.09 0.22 0.46 16 17 C 0.11 0.10 7.27 39.18 0.28 0.38 16 18 N -0.57 3.37 6.05 -187.48 -1.13 2.24 16 19 C 0.09 -0.50 10.43 82.98 0.87 0.37 16 20 C -0.23 -0.46 5.58 -18.61 -0.10 -0.57 16 21 C -0.05 -0.15 3.06 71.24 0.22 0.07 16 22 O -0.56 -2.70 12.88 -148.98 -1.92 -4.61 16 23 Si 0.81 -2.47 30.76 68.60 2.11 -0.36 16 24 C -0.13 -0.87 6.34 -20.21 -0.13 -1.00 16 25 C -0.02 -0.25 9.64 22.74 0.22 -0.03 16 26 C -0.12 0.46 7.38 31.12 0.23 0.69 16 27 O -0.23 -1.06 10.87 -3.60 -0.04 -1.10 16 28 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 29 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.11 -1.16 8.14 -2.38 -0.02 -1.18 16 31 H 0.09 0.24 7.79 -2.39 -0.02 0.22 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.41 -1.67 6.73 -92.71 -0.62 -2.29 16 34 H 0.16 -1.06 6.36 -2.91 -0.02 -1.08 16 35 H 0.16 -1.36 8.06 -2.91 -0.02 -1.38 16 36 H 0.44 -5.73 8.96 -92.71 -0.83 -6.56 16 37 H 0.22 -3.29 6.35 -2.91 -0.02 -3.31 16 38 H 0.08 0.61 7.96 -2.39 -0.02 0.59 16 39 H 0.39 -1.88 8.70 -74.05 -0.64 -2.52 16 40 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 41 H -0.31 -1.77 7.11 99.48 0.71 -1.06 16 42 H 0.11 1.67 7.64 -2.92 -0.02 1.64 16 43 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.10 -0.34 8.07 -2.39 -0.02 -0.36 16 Total: 0.00 -35.67 378.30 -3.23 -38.89 By element: Atomic # 1 Polarization: -19.49 SS G_CDS: -0.96 Total: -20.45 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.11 Total: 9.42 kcal Atomic # 7 Polarization: -3.90 SS G_CDS: -7.47 Total: -11.37 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -2.02 Total: -16.13 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.11 Total: -0.36 kcal Total: -35.67 -3.23 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13287722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.982 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds