Wall clock time and date at job start Tue Mar 9 2021 13:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30273 * 126.28040 * 2 1 4 4 N 1.28669 * 109.37811 * 179.72684 * 3 2 1 5 5 C 1.30277 * 109.37742 * 0.44914 * 4 3 2 6 6 C 1.50702 * 126.27642 * 179.82464 * 5 4 3 7 7 H 1.09009 * 112.84797 * 190.88622 * 6 5 4 8 8 C 1.53780 * 113.69158 * 322.15044 * 6 5 4 9 9 C 1.53786 * 87.08068 * 139.99490 * 8 6 5 10 10 H 1.08999 * 113.68751 * 89.12636 * 9 8 6 11 11 N 1.46493 * 113.61374 * 220.01993 * 9 8 6 12 12 C 1.34780 * 120.00126 * 252.49649 * 11 9 8 13 13 O 1.21695 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.46674 * 119.99981 * 180.02562 * 12 11 9 15 15 C 1.37874 * 126.23064 * 179.97438 * 14 12 11 16 16 C 1.50700 * 126.45889 * 0.03177 * 15 14 12 17 17 C 1.39839 * 107.08432 * 179.80189 * 15 14 12 18 18 C 1.35445 * 107.86257 * 0.37839 * 17 15 14 19 19 C 1.50703 * 125.56230 * 179.88046 * 18 17 15 20 20 O 1.42905 * 109.47264 * 244.69174 * 19 18 17 21 21 Si 1.86300 * 109.47052 * 4.68906 * 19 18 17 22 22 N 1.35530 * 108.87615 * 359.61256 * 18 17 15 23 23 C 1.53775 * 87.08032 * 334.56763 * 9 8 6 24 24 O 1.34356 * 107.43894 * 359.56222 * 5 4 3 25 25 H 1.08998 * 109.47565 * 270.00039 * 1 2 3 26 26 H 1.09004 * 109.47193 * 30.00097 * 1 2 3 27 27 H 1.09004 * 109.47269 * 149.99503 * 1 2 3 28 28 H 1.08995 * 113.61501 * 25.44766 * 8 6 5 29 29 H 1.08999 * 113.61637 * 254.53984 * 8 6 5 30 30 H 0.97001 * 120.00365 * 72.49788 * 11 9 8 31 31 H 1.09001 * 109.47203 * 90.00270 * 16 15 14 32 32 H 1.09000 * 109.47236 * 210.00684 * 16 15 14 33 33 H 1.09001 * 109.46926 * 330.00146 * 16 15 14 34 34 H 1.08003 * 126.06710 * 180.26941 * 17 15 14 35 35 H 1.09001 * 109.47438 * 124.68916 * 19 18 17 36 36 H 0.96691 * 114.00079 * 179.97438 * 20 19 18 37 37 H 1.48492 * 110.00227 * 299.99958 * 21 19 18 38 38 H 1.48504 * 109.99947 * 61.32152 * 21 19 18 39 39 H 0.96997 * 125.68056 * 180.20616 * 22 18 17 40 40 H 1.09001 * 113.61747 * 139.98006 * 23 9 8 41 41 H 1.09004 * 113.61870 * 270.79954 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0058 5 6 3.5653 -0.6254 0.0000 6 6 4.8176 -1.4638 0.0001 7 1 4.6211 -2.5181 -0.1951 8 6 5.9523 -0.8796 -0.8579 9 6 6.9158 -1.3203 0.2568 10 1 7.2938 -2.3351 0.1330 11 7 7.9759 -0.3481 0.5343 12 6 9.2429 -0.6056 0.1535 13 8 9.5061 -1.6454 -0.4212 14 6 10.3045 0.3676 0.4319 15 6 11.6368 0.2367 0.1024 16 6 12.2729 -0.9293 -0.6097 17 6 12.2859 1.3921 0.5487 18 6 11.3608 2.1870 1.1377 19 6 11.6303 3.5327 1.7604 20 8 11.3765 3.4670 3.1652 21 14 13.4092 4.0052 1.4722 22 7 10.1522 1.5775 1.0704 23 6 5.7214 -1.2211 1.2203 24 8 2.3021 -1.0831 0.0000 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 5.8935 0.2017 -0.9820 29 1 6.1036 -1.4072 -1.7996 30 1 7.7661 0.4809 0.9921 31 1 12.2473 -0.7558 -1.6856 32 1 13.3075 -1.0341 -0.2831 33 1 11.7238 -1.8413 -0.3756 34 1 13.3383 1.6109 0.4441 35 1 10.9781 4.2797 1.3079 36 1 11.5300 4.2997 3.6319 37 1 14.3087 2.9948 2.0844 38 1 13.6777 4.1081 0.0153 39 1 9.3187 1.9342 1.4152 40 1 5.6863 -2.0243 1.9563 41 1 5.6003 -0.2335 1.6655 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13940406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:30 Heat of formation + Delta-G solvation = 35.715820 kcal Electronic energy + Delta-G solvation = -25981.866445 eV Core-core repulsion = 22059.810563 eV Total energy + Delta-G solvation = -3922.055882 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.36397 -42.73276 -41.06325 -39.39895 -37.66024 -37.30910 -35.23446 -33.82840 -33.47687 -31.85606 -29.72236 -28.35891 -27.49086 -26.96451 -26.29289 -24.00697 -23.55184 -22.37529 -21.73825 -21.23000 -20.32774 -19.42209 -18.65421 -18.54118 -18.47245 -17.45932 -17.00988 -16.57721 -16.34708 -15.99355 -15.60439 -15.50811 -15.13954 -15.06212 -14.87315 -14.42403 -14.27007 -13.95303 -13.77141 -13.73073 -13.70150 -13.63090 -13.47786 -13.38876 -13.12932 -13.02403 -12.74822 -12.57264 -12.40478 -12.03070 -11.99599 -11.93136 -11.20887 -10.53354 -10.46444 -10.31581 -10.00558 -9.32303 -4.94619 0.01566 0.16973 1.14190 1.18594 1.20307 1.33426 1.73850 1.88687 2.02631 2.09512 2.11866 2.72621 3.14128 3.28615 3.29562 3.43475 3.59201 3.66886 3.70076 3.81069 3.92390 3.97159 4.06637 4.26568 4.35376 4.37580 4.43277 4.50351 4.51118 4.54938 4.60503 4.62327 4.65967 4.75029 4.76425 4.82040 4.95812 4.99595 5.01472 5.17564 5.32877 5.48926 5.67313 6.18419 6.36200 6.83731 6.95351 7.15969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.169 3.831 3 N -0.331 5.331 4 N -0.313 5.313 5 C 0.176 3.824 6 C -0.017 4.017 7 H 0.152 0.848 8 C -0.133 4.133 9 C 0.130 3.870 10 H 0.125 0.875 11 N -0.707 5.707 12 C 0.594 3.406 13 O -0.554 6.554 14 C -0.068 4.068 15 C -0.086 4.086 16 C -0.089 4.089 17 C -0.232 4.232 18 C 0.072 3.928 19 C -0.064 4.064 20 O -0.565 6.565 21 Si 0.812 3.188 22 N -0.509 5.509 23 C -0.119 4.119 24 O -0.231 6.231 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.410 0.590 37 H -0.298 1.298 38 H -0.290 1.290 39 H 0.430 0.570 40 H 0.109 0.891 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 3.505 3.311 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.042 4.042 3 N -0.178 5.178 4 N -0.158 5.158 5 C -0.036 4.036 6 C -0.037 4.037 7 H 0.170 0.830 8 C -0.172 4.172 9 C 0.025 3.975 10 H 0.143 0.857 11 N -0.358 5.358 12 C 0.383 3.617 13 O -0.433 6.433 14 C -0.181 4.181 15 C -0.095 4.095 16 C -0.146 4.146 17 C -0.256 4.256 18 C -0.048 4.048 19 C -0.173 4.173 20 O -0.376 6.376 21 Si 0.716 3.284 22 N -0.107 5.107 23 C -0.157 4.157 24 O -0.111 6.111 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.244 0.756 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.262 0.738 37 H -0.226 1.226 38 H -0.218 1.218 39 H 0.271 0.729 40 H 0.127 0.873 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.854 3.217 2.470 4.959 hybrid contribution -1.243 -0.914 0.026 1.543 sum -4.097 2.304 2.495 5.321 Atomic orbital electron populations 1.20711 0.76904 1.07250 1.06926 1.28994 0.99370 0.78827 0.97039 1.74369 0.96492 1.27048 1.19878 1.74223 1.12757 1.10251 1.18593 1.28211 0.85423 0.91385 0.98586 1.21217 0.82642 0.99241 1.00644 0.83028 1.23570 0.92176 1.02554 0.98938 1.22425 0.84915 0.94502 0.95628 0.85704 1.45705 1.06664 1.23114 1.60290 1.17043 0.81840 0.84782 0.78044 1.90813 1.82526 1.26690 1.43222 1.20194 0.95600 0.90272 1.12016 1.20154 0.91527 0.97089 1.00716 1.20346 1.00156 0.94788 0.99331 1.20629 0.99245 0.96121 1.09602 1.20419 0.85110 0.96420 1.02840 1.24659 1.15260 0.92538 0.84844 1.86429 1.92169 1.41486 1.17467 0.94242 0.70794 0.84879 0.78493 1.41811 1.10095 1.14587 1.44158 1.23442 0.91393 1.04947 0.95949 1.84812 1.17719 1.38670 1.69861 0.86362 0.86549 0.86823 0.89155 0.89137 0.75586 0.91100 0.90874 0.91137 0.84063 0.87766 0.73793 1.22577 1.21769 0.72914 0.87291 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.43 10.51 71.24 0.75 1.18 16 2 C 0.17 0.55 8.48 88.34 0.75 1.30 16 3 N -0.33 -3.18 12.22 -165.50 -2.02 -5.21 16 4 N -0.31 -2.81 11.85 -165.51 -1.96 -4.77 16 5 C 0.18 0.67 7.54 88.34 0.67 1.33 16 6 C -0.02 0.06 4.29 -11.01 -0.05 0.01 16 7 H 0.15 -1.19 8.14 -2.38 -0.02 -1.21 16 8 C -0.13 0.22 7.42 31.12 0.23 0.45 16 9 C 0.13 -0.28 4.24 45.52 0.19 -0.09 16 10 H 0.13 -0.10 7.46 -2.39 -0.02 -0.12 16 11 N -0.71 0.12 5.35 -444.01 -2.38 -2.25 16 12 C 0.59 4.22 7.79 86.45 0.67 4.89 16 13 O -0.55 -7.38 14.40 -4.33 -0.06 -7.44 16 14 C -0.07 -0.49 7.06 40.35 0.28 -0.21 16 15 C -0.09 -0.85 6.21 -19.56 -0.12 -0.97 16 16 C -0.09 -0.75 9.83 71.24 0.70 -0.05 16 17 C -0.23 -1.86 9.27 22.01 0.20 -1.65 16 18 C 0.07 0.29 6.50 41.34 0.27 0.56 16 19 C -0.06 0.20 3.07 71.24 0.22 0.42 16 20 O -0.56 2.04 12.86 -148.98 -1.92 0.13 16 21 Si 0.81 -3.02 30.56 68.60 2.10 -0.92 16 22 N -0.51 -1.14 5.99 -171.94 -1.03 -2.17 16 23 C -0.12 0.60 7.38 31.12 0.23 0.83 16 24 O -0.23 -0.90 10.87 -3.56 -0.04 -0.94 16 25 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 26 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.09 0.11 7.79 -2.39 -0.02 0.09 16 29 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.41 -1.89 7.86 -92.71 -0.73 -2.62 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.77 6.48 -2.39 -0.02 0.76 16 34 H 0.14 0.98 6.19 -2.91 -0.02 0.96 16 35 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 36 H 0.41 -5.86 8.74 -74.06 -0.65 -6.50 16 37 H -0.30 -1.38 7.11 99.48 0.71 -0.68 16 38 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 39 H 0.43 -1.70 8.19 -92.71 -0.76 -2.46 16 40 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.09 -0.37 8.07 -2.39 -0.02 -0.39 16 Total: 0.00 -29.00 351.76 -3.30 -32.29 By element: Atomic # 1 Polarization: -15.75 SS G_CDS: -0.98 Total: -16.74 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.00 Total: 8.02 kcal Atomic # 7 Polarization: -7.02 SS G_CDS: -7.39 Total: -14.41 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -2.02 Total: -8.25 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.10 Total: -0.92 kcal Total: -29.00 -3.30 -32.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13940406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.009 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds