Wall clock time and date at job start Tue Mar 9 2021 13:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30281 * 126.28248 * 2 1 4 4 N 1.28664 * 109.38168 * 179.97438 * 3 2 1 5 5 C 1.30279 * 109.38034 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.28023 * 179.97438 * 5 4 3 7 7 H 1.09006 * 112.85095 * 168.82527 * 6 5 4 8 8 C 1.53774 * 113.61623 * 300.02450 * 6 5 4 9 9 C 1.53784 * 87.08236 * 140.06673 * 8 6 5 10 10 H 1.09003 * 113.61425 * 89.20218 * 9 8 6 11 11 N 1.46499 * 113.61263 * 220.01818 * 9 8 6 12 12 C 1.34776 * 119.99941 * 204.99512 * 11 9 8 13 13 O 1.21283 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00405 * 180.02562 * 12 11 9 15 15 O 1.42894 * 109.47583 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00370 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.05751 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.02761 * 0.02562 * 17 16 15 19 19 O 1.42897 * 109.47267 * 75.00104 * 18 17 16 20 20 Si 1.86304 * 109.46890 * 195.00115 * 18 17 16 21 21 C 1.38171 * 119.94045 * 180.02562 * 17 16 15 22 22 C 1.38240 * 120.06065 * 359.97438 * 21 17 16 23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17 24 24 C 1.38119 * 120.05704 * 0.02562 * 23 22 21 25 25 C 1.53780 * 87.08153 * 334.56790 * 9 8 6 26 26 O 1.34361 * 107.43757 * 0.24028 * 5 4 3 27 27 H 1.09005 * 109.46620 * 90.02648 * 1 2 3 28 28 H 1.08996 * 109.47263 * 210.02554 * 1 2 3 29 29 H 1.08999 * 109.47249 * 330.03337 * 1 2 3 30 30 H 1.08997 * 113.61833 * 25.51724 * 8 6 5 31 31 H 1.09004 * 113.61930 * 254.61344 * 8 6 5 32 32 H 0.97002 * 120.00478 * 25.00336 * 11 9 8 33 33 H 1.09001 * 109.47049 * 59.99786 * 14 12 11 34 34 H 1.08998 * 109.46949 * 300.00530 * 14 12 11 35 35 H 1.09000 * 109.47025 * 314.99193 * 18 17 16 36 36 H 0.96690 * 114.00392 * 59.99967 * 19 18 17 37 37 H 1.48499 * 110.00120 * 58.67623 * 20 18 17 38 38 H 1.48496 * 109.99774 * 180.02562 * 20 18 17 39 39 H 1.08005 * 119.97011 * 180.02562 * 21 17 16 40 40 H 1.07995 * 119.94494 * 180.27435 * 22 21 17 41 41 H 1.07997 * 119.96986 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.02616 * 179.97438 * 24 23 22 43 43 H 1.09001 * 113.61851 * 139.97887 * 25 9 8 44 44 H 1.08998 * 113.61284 * 270.88792 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 1 4.6212 -2.5180 0.1973 8 6 5.7215 -1.2215 -1.2185 9 6 6.9159 -1.3203 -0.2548 10 1 7.2940 -2.3351 -0.1307 11 7 7.9761 -0.3483 -0.5327 12 6 9.2430 -0.6056 -0.1517 13 8 9.5055 -1.6421 0.4208 14 6 10.3336 0.3946 -0.4370 15 8 11.5778 -0.1028 0.0593 16 6 12.6718 0.6836 -0.1187 17 6 13.9120 0.2623 0.3379 18 6 14.0479 -1.0685 1.0317 19 8 13.9759 -2.1189 0.0656 20 14 15.6883 -1.1454 1.9115 21 6 15.0226 1.0640 0.1561 22 6 14.8986 2.2847 -0.4807 23 6 13.6632 2.7070 -0.9368 24 6 12.5498 1.9098 -0.7567 25 6 5.9524 -0.8793 0.8596 26 8 2.3022 -1.0831 -0.0039 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3634 0.8903 0.5133 30 1 5.5997 -0.2337 -1.6629 31 1 5.6865 -2.0250 -1.9543 32 1 7.7663 0.4807 -0.9907 33 1 10.0978 1.3390 0.0535 34 1 10.4090 0.5528 -1.5128 35 1 13.2416 -1.1848 1.7558 36 1 14.6649 -2.0785 -0.6115 37 1 15.7887 -0.0388 2.8967 38 1 15.8349 -2.4534 2.5992 39 1 15.9885 0.7363 0.5111 40 1 15.7687 2.9079 -0.6257 41 1 13.5689 3.6612 -1.4337 42 1 11.5852 2.2402 -1.1127 43 1 6.1036 -1.4065 1.8016 44 1 5.8935 0.2020 0.9833 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_2989392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:44 Heat of formation + Delta-G solvation = -8.366301 kcal Electronic energy + Delta-G solvation = -28973.296050 eV Core-core repulsion = 24667.846202 eV Total energy + Delta-G solvation = -4305.449848 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.35006 -41.70014 -41.05312 -39.65608 -38.40550 -37.46928 -37.29599 -35.06059 -33.65355 -32.71479 -31.29234 -30.06469 -29.12957 -26.94575 -26.72065 -26.63134 -24.14178 -23.63015 -23.10830 -22.59882 -21.72169 -20.91050 -19.50242 -18.67344 -18.52596 -18.25470 -17.99569 -17.48983 -17.40601 -16.86277 -16.62018 -16.45028 -16.02110 -15.66205 -15.58883 -15.46244 -15.11781 -14.99117 -14.65414 -14.30163 -14.20389 -13.81209 -13.79653 -13.68340 -13.62278 -13.51745 -13.38824 -13.01332 -13.00883 -12.76255 -12.40533 -12.34797 -12.18791 -12.07670 -11.98304 -11.91845 -11.75730 -11.04328 -10.51727 -10.37350 -10.23910 -9.95110 -9.20913 -5.04998 0.02946 0.25297 0.42785 1.13614 1.21244 1.29247 1.36977 1.50775 1.62787 1.95768 2.55992 2.72278 2.75825 3.15314 3.30819 3.42521 3.53005 3.56811 3.60247 3.68317 3.76359 3.90006 3.96963 3.99156 4.03567 4.13932 4.27641 4.32339 4.37250 4.38042 4.45477 4.51207 4.53682 4.57985 4.62497 4.66382 4.66955 4.76557 4.83306 4.98913 4.99422 5.02787 5.29659 5.37958 5.39535 5.54428 5.77697 6.25657 6.42003 6.82573 7.05048 7.17215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.020 4.020 7 H 0.148 0.852 8 C -0.115 4.115 9 C 0.129 3.871 10 H 0.116 0.884 11 N -0.700 5.700 12 C 0.516 3.484 13 O -0.567 6.567 14 C 0.035 3.965 15 O -0.314 6.314 16 C 0.125 3.875 17 C -0.171 4.171 18 C -0.073 4.073 19 O -0.556 6.556 20 Si 0.795 3.205 21 C -0.079 4.079 22 C -0.154 4.154 23 C -0.077 4.077 24 C -0.215 4.215 25 C -0.134 4.134 26 O -0.231 6.231 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.421 0.579 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.391 0.609 37 H -0.283 1.283 38 H -0.303 1.303 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.084 0.916 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 3.380 -5.683 6.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.040 4.040 7 H 0.166 0.834 8 C -0.154 4.154 9 C 0.024 3.976 10 H 0.134 0.866 11 N -0.353 5.353 12 C 0.303 3.697 13 O -0.444 6.444 14 C -0.043 4.043 15 O -0.227 6.227 16 C 0.080 3.920 17 C -0.172 4.172 18 C -0.181 4.181 19 O -0.364 6.364 20 Si 0.700 3.300 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.095 4.095 24 C -0.233 4.233 25 C -0.173 4.173 26 O -0.111 6.111 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.259 0.741 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.240 0.760 37 H -0.209 1.209 38 H -0.231 1.231 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.764 3.460 -4.079 5.403 hybrid contribution -1.588 -0.630 0.074 1.710 sum -2.352 2.831 -4.005 5.439 Atomic orbital electron populations 1.20709 0.76933 1.07225 1.06935 1.28995 0.99369 0.78832 0.97092 1.74371 0.96514 1.27013 1.19848 1.74221 1.12706 1.10150 1.18537 1.28199 0.85375 0.91395 0.98620 1.21213 0.82751 0.99083 1.00944 0.83419 1.23430 0.91017 1.05180 0.95723 1.22345 0.85153 0.94416 0.95688 0.86635 1.45629 1.05981 1.23500 1.60193 1.20512 0.84179 0.86973 0.78086 1.90774 1.83004 1.28415 1.42253 1.22704 0.81700 0.96960 1.02914 1.86181 1.14972 1.45007 1.76500 1.19114 0.86446 0.90460 0.96022 1.19857 0.92126 0.99024 1.06219 1.25180 1.12096 0.85279 0.95577 1.86536 1.58241 1.48327 1.43278 0.94040 0.78771 0.76199 0.81040 1.21117 0.96924 0.94187 0.97355 1.21454 0.99014 0.96664 1.00023 1.21408 0.91772 0.99696 0.96583 1.21584 1.02018 0.94444 1.05250 1.23580 0.92256 1.02748 0.98744 1.84815 1.17760 1.38701 1.69865 0.86343 0.86871 0.86546 0.88116 0.87391 0.74120 0.86309 0.85951 0.90304 0.76004 1.20931 1.23148 0.82524 0.82767 0.82964 0.83071 0.89704 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.43 10.51 71.24 0.75 1.18 16 2 C 0.17 0.54 8.48 88.34 0.75 1.29 16 3 N -0.33 -3.12 12.22 -165.49 -2.02 -5.14 16 4 N -0.31 -2.69 11.84 -165.50 -1.96 -4.64 16 5 C 0.18 0.65 7.54 88.34 0.67 1.31 16 6 C -0.02 0.06 4.29 -11.01 -0.05 0.02 16 7 H 0.15 -1.05 8.14 -2.38 -0.02 -1.07 16 8 C -0.11 0.67 7.38 31.12 0.23 0.90 16 9 C 0.13 -0.33 4.24 45.52 0.19 -0.14 16 10 H 0.12 0.04 7.46 -2.39 -0.02 0.02 16 11 N -0.70 2.04 5.35 -440.03 -2.36 -0.32 16 12 C 0.52 2.31 7.91 87.66 0.69 3.01 16 13 O -0.57 -9.01 16.10 16.00 0.26 -8.75 16 14 C 0.04 -0.01 5.22 71.24 0.37 0.36 16 15 O -0.31 -2.85 9.00 -73.39 -0.66 -3.51 16 16 C 0.12 0.69 6.66 22.51 0.15 0.84 16 17 C -0.17 -0.81 5.27 -19.77 -0.10 -0.91 16 18 C -0.07 -0.51 2.38 71.23 0.17 -0.34 16 19 O -0.56 -4.68 12.88 -148.98 -1.92 -6.59 16 20 Si 0.79 1.34 29.92 68.60 2.05 3.39 16 21 C -0.08 0.08 8.66 22.25 0.19 0.28 16 22 C -0.15 0.49 10.04 22.28 0.22 0.71 16 23 C -0.08 0.24 10.04 22.25 0.22 0.46 16 24 C -0.21 0.14 9.04 22.37 0.20 0.34 16 25 C -0.13 0.23 7.42 31.12 0.23 0.46 16 26 O -0.23 -0.91 10.87 -3.67 -0.04 -0.95 16 27 H 0.12 -1.22 8.14 -2.38 -0.02 -1.24 16 28 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 29 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.10 -0.54 8.07 -2.39 -0.02 -0.56 16 31 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.42 -3.88 8.73 -92.71 -0.81 -4.69 16 33 H 0.12 -0.71 7.66 -2.39 -0.02 -0.73 16 34 H 0.12 -0.79 7.66 -2.39 -0.02 -0.81 16 35 H 0.08 1.03 7.83 -2.39 -0.02 1.01 16 36 H 0.39 -0.62 8.70 -74.06 -0.64 -1.27 16 37 H -0.28 -1.60 7.11 99.48 0.71 -0.90 16 38 H -0.30 -2.90 7.11 99.48 0.71 -2.19 16 39 H 0.16 -1.05 5.13 -2.91 -0.01 -1.06 16 40 H 0.15 -1.29 8.06 -2.91 -0.02 -1.31 16 41 H 0.15 -1.25 8.06 -2.91 -0.02 -1.28 16 42 H 0.15 -0.96 6.30 -2.91 -0.02 -0.98 16 43 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.09 0.04 7.79 -2.39 -0.02 0.02 16 Total: 0.00 -34.96 377.77 -2.10 -37.06 By element: Atomic # 1 Polarization: -19.95 SS G_CDS: -0.35 Total: -20.30 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 4.89 Total: 9.77 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -6.34 Total: -10.11 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -2.36 Total: -19.81 kcal Atomic # 14 Polarization: 1.34 SS G_CDS: 2.05 Total: 3.39 kcal Total: -34.96 -2.10 -37.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_2989392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.697 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds