Wall clock time and date at job start Tue Mar 9 2021 13:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30272 * 126.28253 * 2 1 4 4 N 1.28669 * 109.37817 * 179.72860 * 3 2 1 5 5 C 1.30270 * 109.38112 * 0.44580 * 4 3 2 6 6 C 1.50703 * 126.27996 * 179.82307 * 5 4 3 7 7 H 1.09003 * 112.90658 * 190.93997 * 6 5 4 8 8 C 1.53780 * 113.61680 * 322.19230 * 6 5 4 9 9 C 1.53780 * 87.08131 * 139.98167 * 8 6 5 10 10 H 1.09000 * 113.69082 * 89.12542 * 9 8 6 11 11 N 1.46499 * 113.61568 * 220.02227 * 9 8 6 12 12 C 1.34780 * 119.99729 * 252.50141 * 11 9 8 13 13 O 1.21551 * 119.99806 * 359.97438 * 12 11 9 14 14 C 1.47845 * 119.99999 * 179.97438 * 12 11 9 15 15 C 1.39553 * 120.14567 * 179.97438 * 14 12 11 16 16 C 1.50701 * 120.07212 * 0.02562 * 15 14 12 17 17 O 1.42903 * 109.46878 * 179.71769 * 16 15 14 18 18 C 1.35904 * 116.99628 * 179.97438 * 17 16 15 19 19 C 1.38707 * 120.05375 * 179.72747 * 18 17 16 20 20 C 1.38169 * 119.94502 * 179.72566 * 19 18 17 21 21 C 1.50703 * 119.97509 * 180.27686 * 20 19 18 22 22 O 1.42899 * 109.47224 * 65.29310 * 21 20 19 23 23 Si 1.86298 * 109.47267 * 185.29635 * 21 20 19 24 24 C 1.38244 * 120.05275 * 0.56752 * 20 19 18 25 25 C 1.38283 * 120.11102 * 359.68852 * 24 20 19 26 26 C 1.38129 * 120.05835 * 0.03711 * 25 24 20 27 27 C 1.37984 * 119.85235 * 179.72389 * 15 14 12 28 28 C 1.38331 * 120.14414 * 0.26045 * 27 15 14 29 29 C 1.38384 * 120.29658 * 0.02562 * 28 27 15 30 30 C 1.37939 * 120.14185 * 359.97438 * 29 28 27 31 31 C 1.53781 * 113.61542 * 59.69332 * 6 5 4 32 32 O 1.34360 * 107.43604 * 359.56006 * 5 4 3 33 33 H 1.09000 * 109.47123 * 270.00370 * 1 2 3 34 34 H 1.08997 * 109.47263 * 30.00167 * 1 2 3 35 35 H 1.09003 * 109.47565 * 150.00228 * 1 2 3 36 36 H 1.09001 * 113.61309 * 25.43088 * 8 6 5 37 37 H 1.09002 * 113.61141 * 254.53171 * 8 6 5 38 38 H 0.96996 * 120.00706 * 72.48969 * 11 9 8 39 39 H 1.09002 * 109.47060 * 299.71899 * 16 15 14 40 40 H 1.09001 * 109.47380 * 59.71987 * 16 15 14 41 41 H 1.08007 * 120.02988 * 359.97438 * 19 18 17 42 42 H 1.09000 * 109.46453 * 305.29375 * 21 20 19 43 43 H 0.96705 * 113.99414 * 59.99980 * 22 21 20 44 44 H 1.48504 * 110.00163 * 58.67536 * 23 21 20 45 45 H 1.48497 * 110.00208 * 180.02562 * 23 21 20 46 46 H 1.08002 * 119.94322 * 179.70081 * 24 20 19 47 47 H 1.08006 * 119.97542 * 180.02562 * 25 24 20 48 48 H 1.07998 * 120.02665 * 180.02562 * 26 25 24 49 49 H 1.08002 * 119.92473 * 180.23685 * 27 15 14 50 50 H 1.08000 * 119.85188 * 179.97438 * 28 27 15 51 51 H 1.07997 * 119.93076 * 179.97438 * 29 28 27 52 52 H 1.07998 * 120.07113 * 179.97438 * 30 29 28 53 53 H 1.08992 * 113.61749 * 105.46210 * 31 6 5 54 54 H 1.09009 * 113.68843 * 334.57525 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6255 0.0001 6 6 4.8176 -1.4639 0.0000 7 1 4.6223 -2.5182 -0.1959 8 6 5.9514 -0.8777 -0.8577 9 6 6.9157 -1.3182 0.2563 10 1 7.2949 -2.3325 0.1316 11 7 7.9748 -0.3450 0.5345 12 6 9.2420 -0.6007 0.1531 13 8 9.5060 -1.6389 -0.4212 14 6 10.3108 0.3816 0.4333 15 6 11.6240 0.1197 0.0402 16 6 11.9569 -1.1659 -0.6721 17 8 13.3536 -1.1959 -0.9728 18 6 13.8219 -2.2959 -1.6192 19 6 15.1664 -2.3889 -1.9473 20 6 15.6413 -3.5106 -2.5994 21 6 17.1031 -3.6151 -2.9506 22 8 17.8779 -3.6766 -1.7514 23 14 17.3916 -5.1567 -3.9561 24 6 14.7754 -4.5346 -2.9353 25 6 13.4336 -4.4419 -2.6141 26 6 12.9550 -3.3251 -1.9572 27 6 12.6157 1.0433 0.2997 28 6 12.3116 2.2242 0.9527 29 6 11.0126 2.4875 1.3505 30 6 10.0118 1.5727 1.0972 31 6 5.7214 -1.2212 1.2203 32 8 2.3021 -1.0831 0.0001 33 1 -0.3633 0.0001 1.0277 34 1 -0.3633 0.8899 -0.5138 35 1 -0.3634 -0.8900 -0.5138 36 1 5.8913 0.2037 -0.9809 37 1 6.1030 -1.4043 -1.7999 38 1 7.7642 0.4834 0.9930 39 1 11.7046 -2.0116 -0.0323 40 1 11.3845 -1.2272 -1.5978 41 1 15.8424 -1.5868 -1.6896 42 1 17.4005 -2.7418 -3.5310 43 1 17.6659 -4.4308 -1.1845 44 1 16.5670 -5.1197 -5.1906 45 1 18.8296 -5.2717 -4.3083 46 1 15.1476 -5.4085 -3.4493 47 1 12.7591 -5.2434 -2.8772 48 1 11.9070 -3.2534 -1.7062 49 1 13.6317 0.8435 -0.0074 50 1 13.0917 2.9436 1.1538 51 1 10.7819 3.4112 1.8603 52 1 8.9984 1.7791 1.4085 53 1 5.6874 -2.0250 1.9556 54 1 5.5993 -0.2341 1.6664 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4557126.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:25 Heat of formation + Delta-G solvation = 22.693972 kcal Electronic energy + Delta-G solvation = -38790.664040 eV Core-core repulsion = 33662.581267 eV Total energy + Delta-G solvation = -5128.082774 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.172 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -45.33128 -41.84956 -41.21963 -40.30213 -39.18192 -38.83652 -37.27694 -37.25864 -35.18047 -33.70391 -33.31028 -32.48558 -32.12487 -31.01310 -29.64684 -27.96473 -26.95696 -26.90610 -26.54500 -25.00139 -23.91629 -23.64283 -23.46458 -22.85990 -21.85278 -21.62768 -20.86760 -19.13558 -18.90330 -18.60543 -18.51184 -17.90685 -17.49146 -17.39964 -17.17695 -17.06675 -16.58090 -16.47740 -16.25447 -16.16837 -15.97886 -15.67074 -15.45050 -15.35939 -15.18479 -14.86601 -14.54540 -14.38863 -14.27871 -14.19420 -14.06030 -13.73079 -13.69529 -13.63942 -13.60313 -13.43684 -13.31639 -12.99024 -12.95586 -12.82322 -12.70369 -12.48360 -12.36235 -12.21627 -12.19767 -12.02613 -11.92567 -11.88119 -11.67876 -10.92319 -10.49843 -10.48765 -10.29285 -9.99739 -9.96668 -9.82621 -9.27986 -4.98418 -0.27705 0.05210 0.18504 0.25438 0.37665 1.18003 1.23617 1.29824 1.66153 1.73756 1.92489 2.03077 2.05892 2.65158 2.71909 2.76364 3.18770 3.35147 3.45423 3.47163 3.57686 3.60459 3.64707 3.67292 3.71685 3.81036 3.84737 4.00853 4.03437 4.10407 4.19020 4.22798 4.26201 4.29443 4.33558 4.37489 4.42528 4.43586 4.48429 4.51321 4.52312 4.61400 4.64119 4.65548 4.68349 4.73785 4.80612 4.86995 4.90116 4.95602 5.01020 5.07136 5.17422 5.24114 5.33441 5.37071 5.42138 5.42647 5.45148 5.71394 5.81117 6.32679 6.38950 6.75241 7.04264 7.19330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.312 5.312 5 C 0.175 3.825 6 C -0.019 4.019 7 H 0.151 0.849 8 C -0.134 4.134 9 C 0.131 3.869 10 H 0.125 0.875 11 N -0.701 5.701 12 C 0.560 3.440 13 O -0.564 6.564 14 C -0.148 4.148 15 C -0.052 4.052 16 C 0.118 3.882 17 O -0.329 6.329 18 C 0.116 3.884 19 C -0.143 4.143 20 C -0.085 4.085 21 C -0.079 4.079 22 O -0.555 6.555 23 Si 0.787 3.213 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.210 4.210 27 C -0.123 4.123 28 C -0.090 4.090 29 C -0.125 4.125 30 C -0.078 4.078 31 C -0.119 4.119 32 O -0.231 6.231 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.396 0.604 44 H -0.285 1.285 45 H -0.297 1.297 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.135 0.865 49 H 0.132 0.868 50 H 0.150 0.850 51 H 0.159 0.841 52 H 0.157 0.843 53 H 0.108 0.892 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -3.191 3.849 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.179 5.179 4 N -0.157 5.157 5 C -0.036 4.036 6 C -0.039 4.039 7 H 0.168 0.832 8 C -0.173 4.173 9 C 0.026 3.974 10 H 0.143 0.857 11 N -0.353 5.353 12 C 0.349 3.651 13 O -0.445 6.445 14 C -0.151 4.151 15 C -0.053 4.053 16 C 0.044 3.956 17 O -0.244 6.244 18 C 0.071 3.929 19 C -0.162 4.162 20 C -0.085 4.085 21 C -0.189 4.189 22 O -0.363 6.363 23 Si 0.693 3.307 24 C -0.172 4.172 25 C -0.091 4.091 26 C -0.228 4.228 27 C -0.141 4.141 28 C -0.108 4.108 29 C -0.142 4.142 30 C -0.097 4.097 31 C -0.157 4.157 32 O -0.111 6.111 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.246 0.754 44 H -0.211 1.211 45 H -0.225 1.225 46 H 0.169 0.831 47 H 0.173 0.827 48 H 0.153 0.847 49 H 0.150 0.850 50 H 0.168 0.832 51 H 0.177 0.823 52 H 0.175 0.825 53 H 0.127 0.873 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.187 -2.273 2.533 6.204 hybrid contribution -0.790 0.180 0.036 0.811 sum -5.977 -2.093 2.569 6.834 Atomic orbital electron populations 1.20707 0.76982 1.07228 1.06917 1.28973 0.99348 0.78852 0.97106 1.74373 0.96550 1.27067 1.19868 1.74223 1.12683 1.10251 1.18584 1.28261 0.85427 0.91413 0.98528 1.21241 0.82628 0.99135 1.00888 0.83171 1.23578 0.92289 1.02560 0.98911 1.22391 0.85074 0.94590 0.95347 0.85709 1.45745 1.06560 1.23226 1.59721 1.18407 0.83100 0.85673 0.77908 1.90731 1.82891 1.27766 1.43069 1.19669 0.92366 0.97334 1.05719 1.19730 0.93069 0.95170 0.97315 1.21528 0.78333 0.96084 0.99704 1.85936 1.26836 1.39012 1.72589 1.19162 0.93526 0.86635 0.93566 1.20317 0.92466 1.00012 1.03367 1.20246 0.96500 0.93871 0.97891 1.25337 0.87572 1.12159 0.93788 1.86472 1.61761 1.54083 1.34009 0.93557 0.76621 0.81733 0.78836 1.21171 0.93749 0.99095 1.03146 1.21258 0.95760 0.97122 0.94985 1.21565 1.00427 0.95669 1.05175 1.21117 0.99662 0.94000 0.99328 1.21753 0.98015 0.96227 0.94793 1.21556 0.92353 1.00517 0.99816 1.21580 1.01219 0.91534 0.95321 1.23443 0.91435 1.04995 0.95860 1.84812 1.17763 1.38662 1.69886 0.86374 0.86589 0.86834 0.89129 0.89324 0.74791 0.90100 0.90432 0.85760 0.87781 0.75441 1.21143 1.22523 0.83059 0.82739 0.84711 0.84979 0.83190 0.82334 0.82547 0.87344 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.46 10.51 71.24 0.75 1.21 16 2 C 0.17 0.47 8.48 88.34 0.75 1.21 16 3 N -0.33 -3.03 12.22 -165.51 -2.02 -5.06 16 4 N -0.31 -2.58 11.84 -165.51 -1.96 -4.54 16 5 C 0.18 0.52 7.53 88.34 0.67 1.18 16 6 C -0.02 0.08 4.29 -11.01 -0.05 0.04 16 7 H 0.15 -1.35 8.14 -2.39 -0.02 -1.37 16 8 C -0.13 0.43 7.42 31.12 0.23 0.66 16 9 C 0.13 -0.58 4.24 45.52 0.19 -0.39 16 10 H 0.13 -0.43 7.46 -2.39 -0.02 -0.44 16 11 N -0.70 2.13 5.31 -442.90 -2.35 -0.22 16 12 C 0.56 1.69 7.75 86.79 0.67 2.37 16 13 O -0.56 -4.68 13.01 -3.88 -0.05 -4.73 16 14 C -0.15 -0.38 5.87 -20.09 -0.12 -0.50 16 15 C -0.05 -0.30 5.91 -19.61 -0.12 -0.42 16 16 C 0.12 0.89 3.38 71.24 0.24 1.13 16 17 O -0.33 -3.11 8.62 -92.47 -0.80 -3.90 16 18 C 0.12 1.00 6.69 22.50 0.15 1.15 16 19 C -0.14 -1.08 9.63 22.37 0.22 -0.87 16 20 C -0.08 -0.32 5.35 -19.88 -0.11 -0.43 16 21 C -0.08 -0.17 2.80 71.24 0.20 0.03 16 22 O -0.56 -1.55 12.84 -148.98 -1.91 -3.47 16 23 Si 0.79 -0.82 29.80 68.60 2.04 1.22 16 24 C -0.15 -0.15 8.67 22.28 0.19 0.05 16 25 C -0.07 -0.13 10.04 22.25 0.22 0.09 16 26 C -0.21 -1.21 9.04 22.37 0.20 -1.01 16 27 C -0.12 -0.49 9.37 22.23 0.21 -0.28 16 28 C -0.09 0.07 10.04 22.33 0.22 0.29 16 29 C -0.12 0.41 10.03 22.23 0.22 0.64 16 30 C -0.08 0.21 9.54 22.53 0.21 0.43 16 31 C -0.12 0.80 7.38 31.12 0.23 1.03 16 32 O -0.23 -0.75 10.87 -3.61 -0.04 -0.79 16 33 H 0.12 -1.26 8.14 -2.39 -0.02 -1.28 16 34 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 36 H 0.09 -0.01 7.78 -2.39 -0.02 -0.02 16 37 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.41 -3.03 6.76 -92.71 -0.63 -3.65 16 39 H 0.08 0.68 6.88 -2.39 -0.02 0.66 16 40 H 0.08 0.70 6.85 -2.39 -0.02 0.68 16 41 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.10 0.37 7.96 -2.39 -0.02 0.36 16 43 H 0.40 -2.17 8.70 -74.05 -0.64 -2.82 16 44 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 45 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 46 H 0.15 -0.69 4.90 -2.91 -0.01 -0.70 16 47 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 48 H 0.14 0.72 6.30 -2.91 -0.02 0.71 16 49 H 0.13 0.63 7.00 -2.91 -0.02 0.61 16 50 H 0.15 -0.77 8.06 -2.91 -0.02 -0.79 16 51 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 52 H 0.16 -1.42 6.41 -2.91 -0.02 -1.44 16 53 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 54 H 0.10 -0.53 8.07 -2.38 -0.02 -0.55 16 Total: 0.00 -28.05 448.84 -1.94 -29.99 By element: Atomic # 1 Polarization: -15.88 SS G_CDS: -0.25 Total: -16.13 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.40 Total: 7.62 kcal Atomic # 7 Polarization: -3.48 SS G_CDS: -6.33 Total: -9.81 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -2.80 Total: -12.88 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.04 Total: 1.22 kcal Total: -28.05 -1.94 -29.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4557126.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.681 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds