Wall clock time and date at job start Tue Mar 9 2021 13:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35975 * 117.00286 * 2 1 4 4 C 1.38684 * 120.00523 * 179.97438 * 3 2 1 5 5 C 1.38148 * 120.00153 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.00033 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47036 * 254.98085 * 6 5 4 8 8 Si 1.86302 * 109.46995 * 14.97361 * 6 5 4 9 9 C 1.38674 * 120.00137 * 0.02562 * 5 4 3 10 10 O 1.35984 * 119.99945 * 180.02562 * 9 5 4 11 11 C 1.42908 * 116.99896 * 179.97438 * 10 9 5 12 12 C 1.50698 * 109.46887 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 H 1.08998 * 112.85361 * 336.47110 * 15 14 12 17 17 C 1.53778 * 113.61557 * 107.77998 * 15 14 12 18 18 C 1.53785 * 87.08457 * 139.98112 * 17 15 14 19 19 H 1.08997 * 113.61414 * 89.11579 * 18 17 15 20 20 C 1.50702 * 113.69224 * 220.01245 * 18 17 15 21 21 N 1.30273 * 126.28104 * 37.56027 * 20 18 17 22 22 N 1.28672 * 109.37597 * 179.97438 * 21 20 18 23 23 C 1.30272 * 109.38354 * 359.97438 * 22 21 20 24 24 C 1.50700 * 126.28152 * 180.02562 * 23 22 21 25 25 O 1.34365 * 107.43613 * 359.76669 * 23 22 21 26 26 C 1.53786 * 113.61394 * 205.27970 * 15 14 12 27 27 C 1.38718 * 119.99956 * 0.27231 * 9 5 4 28 28 C 1.38110 * 119.99816 * 359.44979 * 27 9 5 29 29 H 1.08996 * 109.47513 * 300.00023 * 1 2 3 30 30 H 1.08997 * 109.46803 * 60.00470 * 1 2 3 31 31 H 1.09007 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99174 * 0.04868 * 4 3 2 33 33 H 1.08996 * 109.47714 * 134.97777 * 6 5 4 34 34 H 0.96701 * 113.99952 * 299.99473 * 7 6 5 35 35 H 1.48505 * 109.99873 * 60.00635 * 8 6 5 36 36 H 1.48502 * 109.99925 * 181.32117 * 8 6 5 37 37 H 1.09003 * 109.46467 * 60.00362 * 11 10 9 38 38 H 1.08993 * 109.47113 * 300.00627 * 11 10 9 39 39 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61721 * 254.52733 * 17 15 14 41 41 H 1.09004 * 113.61436 * 25.43627 * 17 15 14 42 42 H 1.08999 * 109.46551 * 90.03138 * 24 23 22 43 43 H 1.09001 * 109.47185 * 210.02785 * 24 23 22 44 44 H 1.09000 * 109.47056 * 330.02991 * 24 23 22 45 45 H 1.08999 * 113.61272 * 334.56869 * 26 15 14 46 46 H 1.08999 * 113.61438 * 105.38707 * 26 15 14 47 47 H 1.08004 * 120.00288 * 179.70183 * 27 9 5 48 48 H 1.08001 * 120.00132 * 180.24833 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4313 1.2842 0.0005 5 6 4.0585 2.5151 0.0011 6 6 5.5634 2.5940 0.0011 7 8 6.0208 2.9670 1.3025 8 14 6.2723 0.9322 -0.4535 9 6 3.3032 3.6781 0.0016 10 8 3.9206 4.8897 0.0016 11 6 3.0806 6.0459 0.0016 12 6 3.9348 7.2873 0.0022 13 8 5.1439 7.1916 0.0022 14 7 3.3551 8.5041 0.0029 15 6 4.1855 9.7110 0.0095 16 1 5.1824 9.5367 0.4144 17 6 4.1860 10.4658 -1.3302 18 6 4.1374 11.7649 -0.5086 19 1 5.1217 12.1528 -0.2465 20 6 3.2301 12.8170 -1.0924 21 7 2.0852 12.6089 -1.6781 22 7 1.5863 13.7344 -2.0522 23 6 2.3956 14.6988 -1.7174 24 6 2.1845 16.1690 -1.9720 25 8 3.4504 14.1425 -1.0983 26 6 3.4825 10.9392 0.6114 27 6 1.9179 3.6055 0.0073 28 6 1.2909 2.3749 0.0010 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0194 0.3783 0.0002 33 1 5.8882 3.3387 -0.7255 34 1 5.6902 3.8239 1.6049 35 1 5.8041 0.5328 -1.8051 36 1 7.7560 0.9882 -0.4260 37 1 2.4514 6.0377 0.8917 38 1 2.4513 6.0377 -0.8883 39 1 2.3882 8.5807 0.0033 40 1 5.1073 10.3438 -1.8998 41 1 3.2913 10.2940 -1.9286 42 1 1.6550 16.6114 -1.1283 43 1 3.1505 16.6593 -2.0922 44 1 1.5953 16.2996 -2.8797 45 1 2.3954 10.8966 0.5439 46 1 3.8348 11.1983 1.6098 47 1 1.3297 4.5113 0.0126 48 1 0.2124 2.3184 0.0014 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_4974302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:32 Heat of formation + Delta-G solvation = -45.001152 kcal Electronic energy + Delta-G solvation = -33169.746858 eV Core-core repulsion = 28388.488593 eV Total energy + Delta-G solvation = -4781.258266 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.34336 -41.85665 -41.23876 -40.16244 -39.36628 -38.08303 -37.28913 -36.92607 -35.03912 -33.64332 -32.81356 -31.11900 -30.01840 -29.15500 -27.96927 -26.92859 -26.67208 -26.58284 -24.19929 -23.66122 -23.19420 -22.41111 -21.73307 -20.91473 -19.55390 -18.85750 -18.64799 -18.50870 -18.35968 -18.02874 -17.54808 -17.42427 -17.26730 -16.61781 -16.44366 -16.10572 -15.92968 -15.66185 -15.50438 -15.47254 -15.35593 -14.82305 -14.45068 -14.30602 -14.16412 -14.09319 -13.77791 -13.66801 -13.61870 -13.54011 -13.49393 -13.38732 -13.04698 -13.00550 -12.73184 -12.52693 -12.37266 -12.30406 -12.03213 -11.96807 -11.90759 -11.44803 -11.30395 -11.22897 -10.99987 -10.51000 -10.21572 -10.09880 -8.82354 -4.93320 0.03689 0.06370 0.33187 1.14325 1.21922 1.33915 1.39601 1.48108 1.58597 1.91362 2.34867 2.53897 2.55867 2.76521 3.16619 3.32482 3.42805 3.50292 3.56253 3.61679 3.69627 3.73660 3.86193 3.94774 3.99856 4.07167 4.09201 4.13590 4.21476 4.27797 4.28250 4.38557 4.44724 4.45596 4.46881 4.51410 4.59630 4.63945 4.67306 4.70110 4.78343 4.79722 4.85107 4.97433 4.99926 5.04403 5.12261 5.20716 5.38625 5.42899 6.12081 6.38531 6.45115 6.53375 7.06812 7.17781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.080 4.080 7 O -0.544 6.544 8 Si 0.810 3.190 9 C 0.090 3.910 10 O -0.315 6.315 11 C 0.035 3.965 12 C 0.517 3.483 13 O -0.566 6.566 14 N -0.700 5.700 15 C 0.131 3.869 16 H 0.118 0.882 17 C -0.134 4.134 18 C -0.021 4.021 19 H 0.147 0.853 20 C 0.175 3.825 21 N -0.311 5.311 22 N -0.331 5.331 23 C 0.168 3.832 24 C -0.061 4.061 25 O -0.232 6.232 26 C -0.115 4.115 27 C -0.160 4.160 28 C -0.162 4.162 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.062 0.938 34 H 0.372 0.628 35 H -0.265 1.265 36 H -0.294 1.294 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.421 0.579 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.166 0.834 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 4.507 2.392 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.188 4.188 7 O -0.351 6.351 8 Si 0.711 3.289 9 C 0.045 3.955 10 O -0.228 6.228 11 C -0.042 4.042 12 C 0.304 3.696 13 O -0.444 6.444 14 N -0.354 5.354 15 C 0.026 3.974 16 H 0.136 0.864 17 C -0.174 4.174 18 C -0.041 4.041 19 H 0.165 0.835 20 C -0.036 4.036 21 N -0.156 5.156 22 N -0.178 5.178 23 C -0.043 4.043 24 C -0.118 4.118 25 O -0.112 6.112 26 C -0.154 4.154 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.169 0.831 33 H 0.080 0.920 34 H 0.221 0.779 35 H -0.191 1.191 36 H -0.221 1.221 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.259 0.741 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.184 0.816 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.236 2.677 1.302 6.910 hybrid contribution -0.051 2.667 -0.159 2.672 sum -6.287 5.344 1.143 8.330 Atomic orbital electron populations 1.23354 0.76397 1.05624 1.02341 1.86083 1.23374 1.26316 1.88931 1.18981 0.91960 0.85338 0.99197 1.20187 0.92398 0.96816 1.04251 1.19452 0.96049 0.90958 1.05464 1.25493 0.92759 1.12466 0.88059 1.86661 1.74183 1.42286 1.31940 0.92225 0.76261 0.79094 0.81285 1.18789 0.91684 0.84288 1.00752 1.86081 1.35453 1.11872 1.89443 1.22731 0.92728 0.81998 1.06788 1.20483 0.88332 0.85370 0.75432 1.90771 1.16449 1.87301 1.49841 1.45637 1.11277 1.03945 1.74505 1.22329 0.96594 0.82379 0.96124 0.86433 1.23581 1.04387 0.91629 0.97758 1.21231 0.97435 0.87418 0.98013 0.83483 1.28231 0.95657 0.81277 0.98454 1.74219 1.07904 1.19277 1.14200 1.74370 1.26599 0.95086 1.21706 1.28979 0.81598 1.01301 0.92426 1.20706 1.06322 0.78698 1.06095 1.84816 1.43609 1.21705 1.61043 1.23435 1.01620 0.91863 0.98509 1.21370 0.92120 0.99989 1.04353 1.21417 1.01577 0.90966 1.04100 0.91408 0.91608 0.86708 0.83053 0.91993 0.77932 1.19105 1.22118 0.85532 0.86227 0.74129 0.89701 0.88711 0.86366 0.86887 0.86563 0.88170 0.87425 0.81633 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.80 10.50 -93.27 -0.98 -1.78 16 3 C 0.09 0.26 6.69 22.49 0.15 0.41 16 4 C -0.12 -0.54 8.59 22.35 0.19 -0.35 16 5 C -0.12 -0.71 5.27 -19.78 -0.10 -0.82 16 6 C -0.08 -0.64 2.33 71.24 0.17 -0.48 16 7 O -0.54 -5.20 12.65 -148.98 -1.89 -7.08 16 8 Si 0.81 4.37 30.17 68.60 2.07 6.44 16 9 C 0.09 0.31 6.62 22.49 0.15 0.46 16 10 O -0.31 -1.32 8.56 -74.33 -0.64 -1.96 16 11 C 0.04 -0.16 5.22 71.24 0.37 0.22 16 12 C 0.52 0.32 7.91 87.66 0.69 1.01 16 13 O -0.57 -6.42 16.10 16.00 0.26 -6.16 16 14 N -0.70 3.99 5.35 -440.04 -2.36 1.63 16 15 C 0.13 -0.62 4.24 45.52 0.19 -0.43 16 16 H 0.12 -0.26 7.46 -2.39 -0.02 -0.27 16 17 C -0.13 0.45 7.42 31.12 0.23 0.68 16 18 C -0.02 0.09 4.29 -11.01 -0.05 0.04 16 19 H 0.15 -1.22 8.14 -2.39 -0.02 -1.24 16 20 C 0.18 0.48 7.54 88.34 0.67 1.14 16 21 N -0.31 -2.40 11.84 -165.50 -1.96 -4.36 16 22 N -0.33 -2.88 12.22 -165.50 -2.02 -4.90 16 23 C 0.17 0.44 8.48 88.34 0.75 1.18 16 24 C -0.06 0.46 10.51 71.24 0.75 1.21 16 25 O -0.23 -0.74 10.87 -3.69 -0.04 -0.78 16 26 C -0.12 0.85 7.38 31.13 0.23 1.08 16 27 C -0.16 0.33 9.03 22.35 0.20 0.53 16 28 C -0.16 0.24 9.03 22.35 0.20 0.44 16 29 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 30 H 0.07 -0.50 7.66 -2.39 -0.02 -0.51 16 31 H 0.11 -0.94 8.14 -2.38 -0.02 -0.96 16 32 H 0.15 0.27 5.13 -2.91 -0.01 0.25 16 33 H 0.06 0.65 7.82 -2.39 -0.02 0.63 16 34 H 0.37 2.55 8.60 -74.06 -0.64 1.91 16 35 H -0.27 -1.99 7.11 99.48 0.71 -1.28 16 36 H -0.29 -3.41 7.11 99.48 0.71 -2.70 16 37 H 0.13 -1.38 7.65 -2.39 -0.02 -1.40 16 38 H 0.12 -1.15 7.67 -2.39 -0.02 -1.17 16 39 H 0.42 -4.93 8.73 -92.71 -0.81 -5.74 16 40 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.09 -0.10 7.79 -2.39 -0.02 -0.12 16 42 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 43 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 44 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.10 -0.69 8.07 -2.39 -0.02 -0.71 16 46 H 0.11 -1.07 8.14 -2.39 -0.02 -1.09 16 47 H 0.17 -1.57 6.29 -2.91 -0.02 -1.59 16 48 H 0.16 -1.14 6.29 -2.91 -0.02 -1.16 16 Total: 0.00 -31.12 406.65 -2.02 -33.13 By element: Atomic # 1 Polarization: -21.18 SS G_CDS: -0.37 Total: -21.55 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.90 Total: 7.37 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -6.34 Total: -7.63 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -3.28 Total: -17.76 kcal Atomic # 14 Polarization: 4.37 SS G_CDS: 2.07 Total: 6.44 kcal Total: -31.12 -2.02 -33.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_4974302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.867 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds