Wall clock time and date at job start Tue Mar 9 2021 13:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30269 * 126.28270 * 2 1 4 4 N 1.28669 * 109.38036 * 179.73315 * 3 2 1 5 5 C 1.30274 * 109.38336 * 0.44245 * 4 3 2 6 6 C 1.50690 * 126.28242 * 179.83056 * 5 4 3 7 7 H 1.09000 * 112.90879 * 168.43997 * 6 5 4 8 8 C 1.53786 * 113.61518 * 299.68649 * 6 5 4 9 9 C 1.53781 * 87.17350 * 140.02616 * 8 6 5 10 10 H 1.09003 * 113.61462 * 89.16045 * 9 8 6 11 11 N 1.46493 * 113.61552 * 219.97837 * 9 8 6 12 12 C 1.34781 * 120.00279 * 205.00255 * 11 9 8 13 13 O 1.21706 * 119.99718 * 359.97438 * 12 11 9 14 14 C 1.46579 * 119.99887 * 180.02562 * 12 11 9 15 15 C 1.36651 * 125.45307 * 179.97438 * 14 12 11 16 16 C 1.37474 * 113.29448 * 179.97438 * 15 14 12 17 17 C 1.50702 * 122.44939 * 179.97438 * 16 15 14 18 18 C 1.33820 * 115.10220 * 359.97438 * 16 15 14 19 19 C 1.50697 * 124.52158 * 180.02562 * 18 16 15 20 20 O 1.42899 * 109.47370 * 30.00052 * 19 18 16 21 21 Si 1.86299 * 109.46879 * 149.99957 * 19 18 16 22 22 S 1.70613 * 110.95234 * 359.72368 * 18 16 15 23 23 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 24 24 O 1.34360 * 107.43096 * 359.56489 * 5 4 3 25 25 H 1.09004 * 109.47253 * 269.99929 * 1 2 3 26 26 H 1.08996 * 109.47204 * 30.00121 * 1 2 3 27 27 H 1.09006 * 109.46676 * 150.00012 * 1 2 3 28 28 H 1.09002 * 113.61357 * 25.43533 * 8 6 5 29 29 H 1.09002 * 113.61608 * 254.61695 * 8 6 5 30 30 H 0.97006 * 120.00380 * 24.99977 * 11 9 8 31 31 H 1.08002 * 123.35394 * 0.02562 * 15 14 12 32 32 H 1.09007 * 109.46899 * 90.02220 * 17 16 15 33 33 H 1.09001 * 109.47320 * 210.02289 * 17 16 15 34 34 H 1.09004 * 109.47069 * 330.03005 * 17 16 15 35 35 H 1.09003 * 109.47087 * 269.99781 * 19 18 16 36 36 H 0.96700 * 113.99963 * 59.99410 * 20 19 18 37 37 H 1.48510 * 109.99610 * 179.97438 * 21 19 18 38 38 H 1.48495 * 110.00065 * 301.31587 * 21 19 18 39 39 H 1.09005 * 113.61471 * 139.98321 * 23 9 8 40 40 H 1.09003 * 113.61469 * 270.88099 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6255 0.0000 6 6 4.8176 -1.4638 0.0000 7 1 4.6224 -2.5181 0.1959 8 6 5.7215 -1.2211 -1.2203 9 6 6.9173 -1.3188 -0.2584 10 1 7.2960 -2.3333 -0.1341 11 7 7.9767 -0.3465 -0.5385 12 6 9.2444 -0.6031 -0.1594 13 8 9.5089 -1.6424 0.4160 14 6 10.3043 0.3700 -0.4393 15 6 11.6216 0.2251 -0.1059 16 6 12.3998 1.2916 -0.4891 17 6 13.8822 1.3476 -0.2236 18 6 11.7448 2.2765 -1.1150 19 6 12.3878 3.5404 -1.6250 20 8 13.7437 3.2722 -1.9878 21 14 11.4553 4.1531 -3.1169 22 16 10.0861 1.9065 -1.2659 23 6 5.9553 -0.8773 0.8572 24 8 2.3021 -1.0831 0.0000 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5139 28 1 5.5985 -0.2336 -1.6652 29 1 5.6864 -2.0243 -1.9563 30 1 7.7659 0.4820 -0.9969 31 1 12.0125 -0.6414 0.4067 32 1 14.4186 0.9061 -1.0636 33 1 14.1904 2.3859 -0.1009 34 1 14.1097 0.7911 0.6857 35 1 12.3641 4.3007 -0.8442 36 1 13.8408 2.6035 -2.6794 37 1 12.0792 5.3997 -3.6290 38 1 11.4530 3.1131 -4.1768 39 1 6.1083 -1.4038 1.7993 40 1 5.8963 0.2041 0.9803 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_6739946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:58 Heat of formation + Delta-G solvation = 28.237876 kcal Electronic energy + Delta-G solvation = -25527.771546 eV Core-core repulsion = 21631.743412 eV Total energy + Delta-G solvation = -3896.028133 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.30225 -41.34401 -40.16923 -39.34587 -37.41207 -37.24662 -35.02533 -33.61870 -32.11603 -30.23865 -29.67714 -27.38556 -26.88881 -26.04559 -24.60362 -23.69035 -23.21109 -21.84171 -21.01326 -20.13418 -19.31810 -18.63382 -18.48167 -17.81294 -17.32954 -17.24482 -16.55104 -16.39920 -16.19002 -16.04844 -15.49506 -15.47206 -14.80891 -14.60141 -14.43102 -14.24103 -13.91254 -13.73960 -13.63406 -13.59534 -13.52605 -13.42561 -13.13205 -12.99929 -12.95672 -12.69712 -12.41897 -12.34487 -12.23811 -11.93155 -11.87251 -11.82618 -11.26312 -10.88277 -10.47146 -10.26359 -9.67427 -9.37522 -5.11823 -0.66217 0.07703 0.31231 0.72010 1.06955 1.19968 1.26643 1.32249 1.53454 1.86659 2.00485 2.04964 2.78617 3.19803 3.23587 3.35822 3.48621 3.56326 3.65188 3.72934 3.73862 4.02888 4.10842 4.29033 4.32184 4.41444 4.48873 4.50493 4.54217 4.57801 4.63226 4.66697 4.70745 4.80057 4.82254 4.85894 4.89222 5.00832 5.02800 5.06050 5.37971 5.41135 5.44420 6.31463 6.36304 6.98954 7.22275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.330 5.330 4 N -0.311 5.311 5 C 0.176 3.824 6 C -0.018 4.018 7 H 0.151 0.849 8 C -0.119 4.119 9 C 0.128 3.872 10 H 0.124 0.876 11 N -0.704 5.704 12 C 0.594 3.406 13 O -0.566 6.566 14 C -0.287 4.287 15 C -0.058 4.058 16 C -0.109 4.109 17 C -0.092 4.092 18 C -0.238 4.238 19 C -0.036 4.036 20 O -0.529 6.529 21 Si 0.733 3.267 22 S 0.259 5.741 23 C -0.134 4.134 24 O -0.231 6.231 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.411 0.589 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.141 0.859 36 H 0.388 0.612 37 H -0.275 1.275 38 H -0.273 1.273 39 H 0.089 0.911 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -0.248 -2.466 5.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.038 4.038 7 H 0.169 0.831 8 C -0.157 4.157 9 C 0.023 3.977 10 H 0.142 0.858 11 N -0.355 5.355 12 C 0.381 3.619 13 O -0.447 6.447 14 C -0.407 4.407 15 C -0.092 4.092 16 C -0.121 4.121 17 C -0.151 4.151 18 C -0.357 4.357 19 C -0.147 4.147 20 O -0.338 6.338 21 Si 0.635 3.365 22 S 0.528 5.472 23 C -0.173 4.173 24 O -0.111 6.111 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.248 0.752 31 H 0.163 0.837 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.238 0.762 37 H -0.201 1.201 38 H -0.198 1.198 39 H 0.108 0.892 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.406 1.679 -3.116 6.462 hybrid contribution 1.782 -2.197 0.354 2.851 sum -3.624 -0.518 -2.762 4.586 Atomic orbital electron populations 1.20699 0.77011 1.07263 1.06813 1.28969 0.99335 0.78864 0.97176 1.74373 0.96510 1.27001 1.19771 1.74231 1.12683 1.10198 1.18498 1.28202 0.85374 0.91397 0.98603 1.21253 0.82662 0.99171 1.00758 0.83124 1.23454 0.91209 1.05155 0.95913 1.22440 0.85006 0.94428 0.95813 0.85808 1.45730 1.06564 1.23204 1.59987 1.17152 0.82247 0.84789 0.77665 1.90827 1.83013 1.27462 1.43426 1.24640 0.98230 1.02378 1.15405 1.20759 0.91169 0.99237 0.98046 1.18762 0.99087 0.93459 1.00836 1.20608 0.88755 1.03741 1.01951 1.24669 1.00193 1.02929 1.07955 1.24618 0.86552 0.94813 1.08765 1.86620 1.23370 1.63740 1.60022 0.94663 0.86706 0.78606 0.76568 1.82482 1.03322 1.09605 1.51777 1.23635 0.92063 1.02753 0.98849 1.84811 1.17756 1.38687 1.69888 0.86581 0.86493 0.86821 0.88399 0.87202 0.75188 0.83652 0.90594 0.90069 0.91899 0.84193 0.76245 1.20097 1.19806 0.89201 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.45 10.51 71.24 0.75 1.20 16 2 C 0.17 0.47 8.48 88.34 0.75 1.22 16 3 N -0.33 -2.97 12.22 -165.50 -2.02 -5.00 16 4 N -0.31 -2.58 11.83 -165.51 -1.96 -4.54 16 5 C 0.18 0.55 7.54 88.34 0.67 1.22 16 6 C -0.02 0.07 4.30 -10.92 -0.05 0.02 16 7 H 0.15 -1.27 8.14 -2.39 -0.02 -1.29 16 8 C -0.12 0.70 7.37 31.12 0.23 0.93 16 9 C 0.13 -0.36 4.24 45.52 0.19 -0.17 16 10 H 0.12 -0.18 7.46 -2.39 -0.02 -0.20 16 11 N -0.70 0.58 5.35 -444.09 -2.38 -1.79 16 12 C 0.59 3.26 7.78 86.42 0.67 3.93 16 13 O -0.57 -7.34 16.44 -4.37 -0.07 -7.41 16 14 C -0.29 -0.90 6.45 24.08 0.16 -0.75 16 15 C -0.06 -0.24 9.80 21.72 0.21 -0.03 16 16 C -0.11 -0.16 5.75 -21.05 -0.12 -0.28 16 17 C -0.09 0.03 8.67 71.24 0.62 0.65 16 18 C -0.24 0.26 5.54 24.68 0.14 0.40 16 19 C -0.04 0.11 2.76 71.24 0.20 0.31 16 20 O -0.53 0.70 9.86 -148.98 -1.47 -0.77 16 21 Si 0.73 -2.70 31.30 68.60 2.15 -0.55 16 22 S 0.26 -0.79 19.78 -56.49 -1.12 -1.90 16 23 C -0.13 0.31 7.43 31.21 0.23 0.54 16 24 O -0.23 -0.78 10.87 -3.66 -0.04 -0.82 16 25 H 0.12 -1.18 8.14 -2.38 -0.02 -1.20 16 26 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H 0.11 -1.27 8.14 -2.38 -0.02 -1.29 16 28 H 0.10 -0.48 8.07 -2.39 -0.02 -0.50 16 29 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.41 -2.01 7.84 -92.70 -0.73 -2.73 16 31 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.08 0.04 6.42 -2.39 -0.02 0.03 16 34 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 35 H 0.14 -0.73 7.96 -2.39 -0.02 -0.75 16 36 H 0.39 -2.32 8.66 -74.06 -0.64 -2.96 16 37 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 38 H -0.27 -0.20 7.11 99.48 0.71 0.50 16 39 H 0.09 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.09 0.04 7.78 -2.39 -0.02 0.02 16 Total: 0.00 -23.34 355.88 -2.49 -25.83 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.22 Total: -12.25 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.64 Total: 9.19 kcal Atomic # 7 Polarization: -4.97 SS G_CDS: -6.36 Total: -11.32 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.58 Total: -8.99 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.15 Total: -0.55 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.12 Total: -1.90 kcal Total: -23.34 -2.49 -25.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_6739946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.068 kcal (2) G-P(sol) polarization free energy of solvation -23.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds