Wall clock time and date at job start Tue Mar 9 2021 13:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99691 * 2 1 4 4 C 1.53005 * 109.47155 * 269.99938 * 3 2 1 5 5 H 1.08999 * 112.84481 * 43.80329 * 4 3 2 6 6 C 1.53779 * 113.61496 * 175.00222 * 4 3 2 7 7 C 1.53781 * 87.07868 * 140.06438 * 6 4 3 8 8 H 1.08996 * 113.61423 * 89.20473 * 7 6 4 9 9 O 1.42905 * 113.61237 * 220.01578 * 7 6 4 10 10 C 1.42903 * 113.99741 * 210.00144 * 9 7 6 11 11 C 1.52997 * 109.47274 * 60.00281 * 10 9 7 12 12 C 1.53005 * 109.46623 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47042 * 299.99994 * 10 9 7 14 14 C 1.53775 * 87.08212 * 334.56545 * 7 6 4 15 15 C 1.34774 * 120.00126 * 179.97438 * 2 1 3 16 16 O 1.21276 * 120.00249 * 179.97438 * 15 2 1 17 17 C 1.50701 * 119.99915 * 0.02562 * 15 2 1 18 18 C 1.50697 * 109.47083 * 179.97438 * 17 15 2 19 19 C 1.38239 * 119.99869 * 269.72285 * 18 17 15 20 20 C 1.38234 * 119.99830 * 179.78861 * 19 18 17 21 21 C 1.38235 * 120.00093 * 0.46033 * 20 19 18 22 22 C 1.50703 * 119.99855 * 179.78763 * 21 20 19 23 23 O 1.42894 * 109.47354 * 244.97965 * 22 21 20 24 24 Si 1.86297 * 109.47125 * 4.98396 * 22 21 20 25 25 C 1.38227 * 119.99851 * 359.77527 * 21 20 19 26 26 C 1.38231 * 120.00257 * 0.02562 * 25 21 20 27 27 H 1.08994 * 109.46840 * 90.00131 * 1 2 3 28 28 H 1.08999 * 109.46634 * 210.00289 * 1 2 3 29 29 H 1.09000 * 109.47274 * 329.99886 * 1 2 3 30 30 H 1.09001 * 109.47094 * 150.00364 * 3 2 1 31 31 H 1.09001 * 109.47302 * 29.99600 * 3 2 1 32 32 H 1.09003 * 113.61486 * 25.51717 * 6 4 3 33 33 H 1.08993 * 113.69047 * 254.62371 * 6 4 3 34 34 H 1.09002 * 109.47124 * 59.99904 * 11 10 9 35 35 H 1.09002 * 109.46928 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.46855 * 300.00156 * 11 10 9 37 37 H 1.08993 * 109.47147 * 60.00241 * 12 10 9 38 38 H 1.09003 * 109.46481 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.46680 * 299.99773 * 12 10 9 40 40 H 1.09001 * 109.47117 * 60.00699 * 13 10 9 41 41 H 1.09007 * 109.46604 * 180.02562 * 13 10 9 42 42 H 1.08996 * 109.47004 * 300.00108 * 13 10 9 43 43 H 1.09007 * 113.61519 * 139.98052 * 14 7 6 44 44 H 1.08996 * 113.61809 * 270.88411 * 14 7 6 45 45 H 1.09005 * 109.46787 * 299.99216 * 17 15 2 46 46 H 1.08998 * 109.47544 * 59.99135 * 17 15 2 47 47 H 1.08005 * 119.99974 * 0.02562 * 19 18 17 48 48 H 1.08000 * 119.99820 * 180.25506 * 20 19 18 49 49 H 1.09002 * 109.46608 * 124.98355 * 22 21 20 50 50 H 0.96702 * 114.00132 * 180.02562 * 23 22 21 51 51 H 1.48506 * 110.00155 * 299.99584 * 24 22 21 52 52 H 1.48501 * 110.00258 * 61.31560 * 24 22 21 53 53 H 1.08001 * 119.99895 * 180.02562 * 25 21 20 54 54 H 1.08008 * 119.99891 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5792 1.5883 -2.0832 6 6 3.1105 3.0958 -1.5554 7 6 3.9619 2.5115 -2.6950 8 1 3.5020 2.6098 -3.6782 9 8 5.3231 2.9461 -2.6732 10 6 5.9326 3.0126 -3.9640 11 6 5.1586 3.9966 -4.8435 12 6 7.3805 3.4861 -3.8204 13 6 5.9118 1.6257 -4.6099 14 6 3.7445 1.1345 -2.0458 15 6 2.1390 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3855 -2.4723 0.0005 18 6 2.3648 -3.6177 0.0005 19 6 2.8095 -4.1468 -1.1967 20 6 3.7112 -5.1946 -1.1967 21 6 4.1608 -5.7196 0.0004 22 6 5.1401 -6.8650 0.0004 23 8 4.5220 -8.0202 0.5707 24 14 5.6589 -7.2384 -1.7495 25 6 3.7123 -5.1937 1.1975 26 6 2.8139 -4.1432 1.1976 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1500 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.6908 3.3764 -0.6765 33 1 2.4267 3.8803 -1.8794 34 1 5.1735 4.9846 -4.3833 35 1 5.6238 4.0476 -5.8279 36 1 4.1273 3.6589 -4.9456 37 1 7.9316 2.7848 -3.1941 38 1 7.8453 3.5372 -4.8051 39 1 7.3956 4.4740 -3.3601 40 1 4.8804 1.2881 -4.7122 41 1 6.3771 1.6765 -5.5944 42 1 6.4632 0.9248 -3.9834 43 1 3.5714 0.3347 -2.7659 44 1 4.4981 0.8790 -1.3010 45 1 0.7586 -2.5298 0.8904 46 1 0.7590 -2.5302 -0.8896 47 1 2.4555 -3.7390 -2.1320 48 1 4.0618 -5.6052 -2.1320 49 1 6.0164 -6.5938 0.5892 50 1 5.0960 -8.7978 0.6034 51 1 4.4730 -7.6096 -2.5627 52 1 6.3317 -6.0551 -2.3433 53 1 4.0639 -5.6036 2.1328 54 1 2.4632 -3.7326 2.1330 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_12335836.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:46 Heat of formation + Delta-G solvation = -57.487467 kcal Electronic energy + Delta-G solvation = -31441.820562 eV Core-core repulsion = 27346.302619 eV Total energy + Delta-G solvation = -4095.517942 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.213 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.52117 -40.85678 -40.14828 -38.45587 -37.62880 -36.37160 -34.31994 -33.86422 -32.12166 -30.67828 -29.09182 -28.43592 -28.38127 -27.30707 -26.59057 -25.61207 -24.01590 -23.74055 -22.00346 -20.98119 -20.61304 -20.15745 -18.41752 -18.14687 -17.78194 -17.75606 -17.16452 -16.97248 -16.73568 -16.38989 -16.12714 -15.96407 -15.56744 -15.19110 -14.91759 -14.80541 -14.68844 -14.47426 -14.36425 -14.04775 -13.92421 -13.65045 -13.59604 -13.47864 -13.42499 -13.36751 -13.18856 -13.07998 -13.00692 -12.85182 -12.74953 -12.74372 -12.36844 -12.27221 -12.10216 -12.06469 -11.91695 -11.77813 -11.40918 -11.26273 -10.92606 -10.41115 -10.35918 -10.05314 -9.72604 -9.65704 -5.01604 0.08830 0.27550 1.24715 1.58133 1.59689 1.91621 1.97891 2.58698 2.69859 3.37694 3.43734 3.53464 3.61126 3.65127 3.71868 3.77654 3.79375 3.83891 3.84350 3.93728 3.94756 4.03038 4.10541 4.15734 4.28369 4.32404 4.39004 4.41585 4.47142 4.50440 4.53315 4.55475 4.55737 4.63733 4.70294 4.73582 4.76204 4.80137 4.82739 4.84886 4.87065 4.87392 4.91611 4.97103 4.97909 5.05111 5.16742 5.20308 5.24825 5.27549 5.36916 5.37612 5.42923 5.55277 5.85264 6.35200 6.38138 6.87252 7.16535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.614 5.614 3 C 0.127 3.873 4 C -0.112 4.112 5 H 0.106 0.894 6 C -0.121 4.121 7 C 0.058 3.942 8 H 0.098 0.902 9 O -0.385 6.385 10 C 0.097 3.903 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.172 4.172 14 C -0.138 4.138 15 C 0.509 3.491 16 O -0.572 6.572 17 C -0.096 4.096 18 C -0.068 4.068 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.097 4.097 22 C -0.079 4.079 23 O -0.561 6.561 24 Si 0.777 3.223 25 C -0.102 4.102 26 C -0.111 4.111 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.133 0.867 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.403 0.597 51 H -0.293 1.293 52 H -0.298 1.298 53 H 0.137 0.863 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 0.305 -0.747 4.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.347 5.347 3 C 0.005 3.995 4 C -0.132 4.132 5 H 0.124 0.876 6 C -0.159 4.159 7 C 0.001 3.999 8 H 0.116 0.884 9 O -0.305 6.305 10 C 0.058 3.942 11 C -0.231 4.231 12 C -0.196 4.196 13 C -0.230 4.230 14 C -0.176 4.176 15 C 0.297 3.703 16 O -0.451 6.451 17 C -0.135 4.135 18 C -0.068 4.068 19 C -0.130 4.130 20 C -0.163 4.163 21 C -0.097 4.097 22 C -0.189 4.189 23 O -0.371 6.371 24 Si 0.684 3.316 25 C -0.120 4.120 26 C -0.129 4.129 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.151 0.849 48 H 0.130 0.870 49 H 0.107 0.893 50 H 0.254 0.746 51 H -0.220 1.220 52 H -0.226 1.226 53 H 0.155 0.845 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.262 0.975 -1.344 4.574 hybrid contribution -0.038 0.221 0.007 0.225 sum -4.299 1.196 -1.337 4.658 Atomic orbital electron populations 1.22149 0.76825 1.05140 1.03346 1.47970 1.08481 1.05195 1.73060 1.21464 0.97394 0.84929 0.95738 1.22660 0.97096 0.96111 0.97318 0.87622 1.23155 0.97647 0.96571 0.98525 1.23774 0.82595 0.94501 0.99073 0.88400 1.88023 1.25852 1.87289 1.29305 1.21688 0.94260 0.94780 0.83441 1.22420 1.00666 0.99444 1.00553 1.21795 0.93119 1.01579 1.03134 1.22435 1.02241 0.96679 1.01641 1.23382 0.97910 0.96599 0.99690 1.20941 0.87696 0.86133 0.75485 1.90736 1.15908 1.87809 1.50613 1.20786 0.97057 0.88022 1.07639 1.19588 0.97986 0.96248 0.93014 1.21101 0.97175 0.96041 0.98665 1.20988 0.99441 0.99026 0.96815 1.19706 0.98928 0.97331 0.93698 1.24809 0.96407 0.86278 1.11367 1.86435 1.44250 1.21625 1.84810 0.94588 0.80379 0.84021 0.72596 1.21186 0.96935 0.95939 0.97927 1.21335 0.97105 0.96040 0.98406 0.91288 0.89196 0.89268 0.92401 0.87799 0.89916 0.89039 0.91831 0.90262 0.91890 0.92903 0.89515 0.91938 0.92512 0.90237 0.93359 0.93349 0.91970 0.85056 0.85652 0.84885 0.87005 0.89287 0.74556 1.22042 1.22559 0.84543 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.62 10.29 127.77 1.31 0.70 16 2 N -0.61 0.58 2.87 -846.75 -2.43 -1.85 16 3 C 0.13 0.05 5.29 86.38 0.46 0.51 16 4 C -0.11 -0.04 3.96 -10.27 -0.04 -0.08 16 5 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 6 C -0.12 -0.08 7.47 31.12 0.23 0.15 16 7 C 0.06 0.24 2.82 31.12 0.09 0.32 16 8 H 0.10 0.14 5.54 -2.39 -0.01 0.13 16 9 O -0.38 -3.25 10.00 -148.98 -1.49 -4.74 16 10 C 0.10 0.40 1.11 -10.79 -0.01 0.39 16 11 C -0.17 -0.08 8.38 71.98 0.60 0.52 16 12 C -0.14 -0.42 8.84 71.98 0.64 0.22 16 13 C -0.17 -0.63 8.38 71.98 0.60 -0.03 16 14 C -0.14 -0.93 6.90 31.12 0.21 -0.72 16 15 C 0.51 2.37 7.67 87.66 0.67 3.04 16 16 O -0.57 -8.33 14.90 -3.02 -0.04 -8.38 16 17 C -0.10 0.10 4.38 29.10 0.13 0.22 16 18 C -0.07 -0.41 4.37 -19.87 -0.09 -0.50 16 19 C -0.11 -0.94 9.70 22.27 0.22 -0.72 16 20 C -0.15 -1.54 8.67 22.27 0.19 -1.35 16 21 C -0.10 -0.92 5.38 -19.87 -0.11 -1.03 16 22 C -0.08 -0.28 2.79 71.24 0.20 -0.09 16 23 O -0.56 -1.43 12.81 -148.98 -1.91 -3.34 16 24 Si 0.78 1.43 29.85 68.60 2.05 3.48 16 25 C -0.10 -0.84 9.69 22.27 0.22 -0.63 16 26 C -0.11 -0.73 9.70 22.27 0.22 -0.51 16 27 H 0.07 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H 0.09 -1.08 6.44 -2.39 -0.02 -1.10 16 29 H 0.09 -1.02 7.89 -2.39 -0.02 -1.04 16 30 H 0.06 0.39 7.13 -2.39 -0.02 0.38 16 31 H 0.10 -0.48 7.89 -2.39 -0.02 -0.50 16 32 H 0.08 0.23 8.10 -2.39 -0.02 0.22 16 33 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.06 -0.03 6.24 -2.39 -0.01 -0.05 16 37 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.06 0.20 7.02 -2.39 -0.02 0.19 16 41 H 0.08 0.05 8.14 -2.38 -0.02 0.03 16 42 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.06 0.85 7.76 -2.39 -0.02 0.83 16 45 H 0.13 -0.87 7.35 -2.38 -0.02 -0.88 16 46 H 0.13 -0.71 8.05 -2.39 -0.02 -0.72 16 47 H 0.13 0.63 8.06 -2.91 -0.02 0.60 16 48 H 0.11 1.12 4.87 -2.91 -0.01 1.11 16 49 H 0.09 0.02 7.96 -2.39 -0.02 0.00 16 50 H 0.40 -3.40 8.74 -74.06 -0.65 -4.05 16 51 H -0.29 -2.48 7.05 99.48 0.70 -1.78 16 52 H -0.30 -2.57 7.11 99.48 0.71 -1.86 16 53 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 54 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 Total: 0.00 -24.51 425.12 2.17 -22.34 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: 0.25 Total: -7.94 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.74 Total: 0.44 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -2.43 Total: -1.85 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -3.44 Total: -16.45 kcal Atomic # 14 Polarization: 1.43 SS G_CDS: 2.05 Total: 3.48 kcal Total: -24.51 2.17 -22.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_12335836.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.149 kcal (2) G-P(sol) polarization free energy of solvation -24.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds