Wall clock time and date at job start Tue Mar 9 2021 13:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99919 * 2 1 4 4 C 1.52998 * 109.47010 * 90.00048 * 3 2 1 5 5 H 1.09006 * 112.84985 * 316.19508 * 4 3 2 6 6 C 1.53780 * 113.61643 * 87.50110 * 4 3 2 7 7 C 1.53782 * 87.08017 * 139.98382 * 6 4 3 8 8 H 1.08992 * 113.69103 * 89.13027 * 7 6 4 9 9 O 1.42901 * 113.61071 * 220.01990 * 7 6 4 10 10 C 1.42893 * 114.00261 * 247.49684 * 9 7 6 11 11 C 1.52998 * 109.47160 * 59.99918 * 10 9 7 12 12 C 1.53000 * 109.47114 * 300.00199 * 10 9 7 13 13 C 1.53000 * 109.47708 * 180.02562 * 10 9 7 14 14 C 1.53779 * 113.61440 * 184.99903 * 4 3 2 15 15 C 1.34778 * 119.99988 * 180.02562 * 2 1 3 16 16 O 1.21588 * 119.99828 * 186.82563 * 15 2 1 17 17 C 1.47573 * 119.99780 * 6.81760 * 15 2 1 18 18 C 1.40198 * 119.83524 * 21.11559 * 17 15 2 19 19 C 1.36235 * 120.37900 * 179.97438 * 18 17 15 20 20 C 1.39877 * 119.95972 * 0.02562 * 19 18 17 21 21 C 1.46261 * 133.84237 * 179.97438 * 20 19 18 22 22 C 1.50697 * 126.48263 * 359.97389 * 21 20 19 23 23 O 1.42906 * 109.46974 * 75.00353 * 22 21 20 24 24 Si 1.86294 * 109.47258 * 195.00302 * 22 21 20 25 25 C 1.34456 * 107.03388 * 180.02562 * 21 20 19 26 26 N 1.36558 * 109.98478 * 359.97438 * 25 21 20 27 27 C 1.37830 * 109.86310 * 359.97438 * 26 25 21 28 28 C 1.38646 * 133.37888 * 180.32788 * 27 26 25 29 29 H 1.09004 * 109.47257 * 88.35849 * 1 2 3 30 30 H 1.08999 * 109.47253 * 208.35934 * 1 2 3 31 31 H 1.09001 * 109.47373 * 328.36388 * 1 2 3 32 32 H 1.08999 * 109.47224 * 329.99798 * 3 2 1 33 33 H 1.08994 * 109.47122 * 209.99941 * 3 2 1 34 34 H 1.09000 * 113.61342 * 25.43210 * 6 4 3 35 35 H 1.08998 * 113.61615 * 254.53066 * 6 4 3 36 36 H 1.08997 * 109.47497 * 300.00345 * 11 10 9 37 37 H 1.09000 * 109.47303 * 180.02562 * 11 10 9 38 38 H 1.08997 * 109.47049 * 60.00458 * 11 10 9 39 39 H 1.09000 * 109.47181 * 179.97438 * 12 10 9 40 40 H 1.08994 * 109.47335 * 300.00042 * 12 10 9 41 41 H 1.09006 * 109.47199 * 59.99548 * 12 10 9 42 42 H 1.09004 * 109.46979 * 300.00222 * 13 10 9 43 43 H 1.08997 * 109.46759 * 59.99454 * 13 10 9 44 44 H 1.09000 * 109.47498 * 180.02562 * 13 10 9 45 45 H 1.09005 * 113.61368 * 105.46952 * 14 4 3 46 46 H 1.08997 * 113.61372 * 334.57123 * 14 4 3 47 47 H 1.07993 * 119.81065 * 359.97438 * 18 17 15 48 48 H 1.08003 * 120.02062 * 180.02562 * 19 18 17 49 49 H 1.08995 * 109.47281 * 315.00499 * 22 21 20 50 50 H 0.96706 * 113.99730 * 59.99583 * 23 22 21 51 51 H 1.48499 * 110.00162 * 180.02562 * 24 22 21 52 52 H 1.48505 * 109.99926 * 301.32285 * 24 22 21 53 53 H 1.07998 * 125.00704 * 179.97438 * 25 21 20 54 54 H 0.97006 * 125.07309 * 179.97438 * 26 25 21 55 55 H 1.08005 * 120.16863 * 359.92887 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5791 1.5883 2.0832 6 6 3.7453 1.1343 2.0438 7 6 3.9634 2.5109 2.6936 8 1 3.5047 2.6084 3.6774 9 8 5.3245 2.9456 2.6703 10 6 5.9358 3.0114 3.9602 11 6 5.9159 1.6242 4.6053 12 6 5.1628 3.9947 4.8414 13 6 7.3830 3.4862 3.8153 14 6 3.1105 3.0957 1.5554 15 6 2.1389 -1.1672 -0.0005 16 8 3.3483 -1.1710 0.1246 17 6 1.4088 -2.4406 -0.1528 18 6 0.1298 -2.4470 -0.7269 19 6 -0.5539 -3.6162 -0.8733 20 6 0.0204 -4.8190 -0.4490 21 6 -0.4246 -6.2123 -0.4565 22 6 -1.7411 -6.7297 -0.9762 23 8 -1.7216 -6.7312 -2.4052 24 14 -2.0143 -8.4653 -0.3571 25 6 0.5627 -6.9440 0.0890 26 7 1.6027 -6.1335 0.4443 27 6 1.3058 -4.8251 0.1286 28 6 1.9974 -3.6315 0.2675 29 1 -0.3634 0.0294 -1.0273 30 1 -0.3634 -0.9043 0.4881 31 1 -0.3634 0.8749 0.5390 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1385 -0.5138 34 1 4.4980 0.8793 1.2978 35 1 3.5733 0.3341 2.7636 36 1 4.8848 1.2863 4.7087 37 1 6.3818 1.6744 5.5895 38 1 6.4666 0.9237 3.9777 39 1 5.6288 4.0445 5.8255 40 1 5.1769 4.9829 4.3818 41 1 4.1316 3.6569 4.9447 42 1 7.9340 2.7860 3.1874 43 1 7.3968 4.4745 3.3558 44 1 7.8494 3.5359 4.7992 45 1 2.4260 3.8790 1.8810 46 1 3.6896 3.3770 0.6759 47 1 -0.3161 -1.5197 -1.0549 48 1 -1.5387 -3.6144 -1.3167 49 1 -2.5483 -6.0872 -0.6246 50 1 -1.0265 -7.2835 -2.7885 51 1 -3.3091 -8.9873 -0.8632 52 1 -0.9036 -9.3444 -0.8032 53 1 0.5371 -8.0150 0.2260 54 1 2.4276 -6.4337 0.8573 55 1 2.9846 -3.6240 0.7054 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_12335838.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:49 Heat of formation + Delta-G solvation = -0.496591 kcal Electronic energy + Delta-G solvation = -34326.912159 eV Core-core repulsion = 29911.987335 eV Total energy + Delta-G solvation = -4414.924824 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.209 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.49602 -41.38543 -40.56142 -38.50539 -37.94475 -37.56093 -36.44969 -33.88632 -33.25529 -31.29836 -30.77034 -29.17911 -28.38783 -28.35881 -27.67323 -26.56970 -26.38934 -24.79737 -23.55330 -23.12474 -21.09305 -20.82215 -20.55919 -20.33846 -19.23586 -18.47419 -17.80972 -17.55020 -17.27905 -16.95685 -16.64248 -16.19644 -16.09723 -15.99074 -15.74583 -15.62400 -15.41894 -15.12008 -14.97864 -14.74064 -14.57655 -14.49928 -14.29381 -14.07385 -13.84390 -13.66711 -13.46858 -13.42531 -13.36890 -13.20975 -12.93062 -12.78292 -12.72405 -12.68133 -12.49090 -12.39653 -12.23214 -12.02789 -11.90664 -11.74457 -11.71232 -11.36200 -11.21891 -10.95097 -10.76935 -10.44711 -10.35465 -9.67920 -9.31297 -8.77579 -4.83869 -0.28372 0.40537 1.38971 1.40518 1.64381 1.80961 1.92233 2.04857 2.19791 2.74222 2.84882 3.41583 3.55837 3.59794 3.66341 3.68948 3.80695 3.83638 3.84877 3.88955 3.92709 3.98293 4.07536 4.09763 4.13870 4.26943 4.37154 4.40518 4.46134 4.52150 4.54546 4.58353 4.60061 4.61919 4.66434 4.73977 4.75687 4.81109 4.81468 4.85653 4.86757 4.88947 4.92069 4.93041 4.98627 5.04117 5.09885 5.20155 5.24797 5.29416 5.32295 5.38812 5.45020 5.49013 5.60902 5.63934 6.00628 6.31729 6.43174 6.51304 6.61639 7.10186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.606 5.606 3 C 0.128 3.872 4 C -0.115 4.115 5 H 0.105 0.895 6 C -0.136 4.136 7 C 0.057 3.943 8 H 0.098 0.902 9 O -0.384 6.384 10 C 0.096 3.904 11 C -0.172 4.172 12 C -0.174 4.174 13 C -0.139 4.139 14 C -0.120 4.120 15 C 0.555 3.445 16 O -0.574 6.574 17 C -0.134 4.134 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.080 4.080 21 C -0.224 4.224 22 C -0.048 4.048 23 O -0.554 6.554 24 Si 0.774 3.226 25 C 0.088 3.912 26 N -0.579 5.579 27 C 0.066 3.934 28 C -0.072 4.072 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.173 0.827 48 H 0.140 0.860 49 H 0.115 0.885 50 H 0.383 0.617 51 H -0.307 1.307 52 H -0.271 1.271 53 H 0.206 0.794 54 H 0.433 0.567 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 -0.850 4.548 6.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.337 5.337 3 C 0.006 3.994 4 C -0.134 4.134 5 H 0.123 0.877 6 C -0.174 4.174 7 C 0.000 4.000 8 H 0.116 0.884 9 O -0.304 6.304 10 C 0.058 3.942 11 C -0.229 4.229 12 C -0.231 4.231 13 C -0.196 4.196 14 C -0.158 4.158 15 C 0.345 3.655 16 O -0.455 6.455 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.085 4.085 21 C -0.231 4.231 22 C -0.157 4.157 23 O -0.362 6.362 24 Si 0.678 3.322 25 C -0.041 4.041 26 N -0.182 5.182 27 C -0.040 4.040 28 C -0.093 4.093 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.190 0.810 48 H 0.158 0.842 49 H 0.133 0.867 50 H 0.232 0.768 51 H -0.236 1.236 52 H -0.197 1.197 53 H 0.223 0.777 54 H 0.273 0.727 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.409 -1.255 4.380 6.340 hybrid contribution 1.189 -0.311 -0.800 1.467 sum -3.220 -1.566 3.580 5.063 Atomic orbital electron populations 1.22688 0.77418 1.05106 1.03167 1.47751 1.08305 1.05109 1.72516 1.21534 0.97359 0.84443 0.96058 1.22672 0.97306 0.96274 0.97157 0.87686 1.23375 0.97796 0.96477 0.99721 1.23783 0.82591 0.94576 0.99069 0.88437 1.88018 1.25785 1.87286 1.29273 1.21689 0.94211 0.94841 0.83496 1.22422 1.02274 0.96618 1.01605 1.22420 1.00693 0.99449 1.00525 1.21788 0.93143 1.01543 1.03096 1.23155 0.97614 0.96420 0.98599 1.18516 0.86557 0.84511 0.75927 1.90767 1.15676 1.87722 1.51308 1.19477 0.96492 0.92022 1.05807 1.21897 0.92963 1.00554 0.99394 1.20468 1.00720 0.90147 0.99000 1.19567 0.93650 0.94440 1.00884 1.20759 0.99205 0.91518 1.11652 1.24569 0.95601 1.12951 0.82563 1.86574 1.58337 1.71832 1.19409 0.94178 0.76668 0.71431 0.89938 1.22272 0.86555 0.97572 0.97741 1.41798 1.18546 1.04155 1.53691 1.18114 0.96199 0.85897 1.03831 1.20078 0.99224 0.89269 1.00759 0.89903 0.89273 0.88907 0.87292 0.92047 0.91693 0.93384 0.92526 0.90299 0.93185 0.90315 0.91903 0.91913 0.92847 0.92026 0.89566 0.89034 0.89756 0.81044 0.84183 0.86690 0.76801 1.23568 1.19692 0.77748 0.72726 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.35 8.64 127.77 1.10 0.75 16 2 N -0.61 -1.02 2.87 -850.49 -2.44 -3.46 16 3 C 0.13 0.14 5.22 86.38 0.45 0.59 16 4 C -0.11 -0.09 3.96 -10.27 -0.04 -0.13 16 5 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 6 C -0.14 -0.92 6.58 31.12 0.20 -0.72 16 7 C 0.06 0.22 2.82 31.12 0.09 0.31 16 8 H 0.10 0.13 5.54 -2.39 -0.01 0.12 16 9 O -0.38 -3.05 10.00 -148.98 -1.49 -4.54 16 10 C 0.10 0.36 1.11 -10.79 -0.01 0.34 16 11 C -0.17 -0.51 8.39 71.98 0.60 0.09 16 12 C -0.17 -0.04 8.38 71.98 0.60 0.57 16 13 C -0.14 -0.35 8.84 71.98 0.64 0.29 16 14 C -0.12 -0.06 7.47 31.12 0.23 0.18 16 15 C 0.55 4.78 7.49 86.71 0.65 5.43 16 16 O -0.57 -9.37 14.99 -3.99 -0.06 -9.43 16 17 C -0.13 -0.82 5.55 -20.08 -0.11 -0.93 16 18 C -0.13 -0.18 7.54 22.28 0.17 -0.01 16 19 C -0.08 -0.20 10.03 22.20 0.22 0.03 16 20 C -0.08 -0.31 6.35 -20.14 -0.13 -0.44 16 21 C -0.22 0.03 5.57 -18.64 -0.10 -0.07 16 22 C -0.05 0.06 3.06 71.24 0.22 0.28 16 23 O -0.55 -1.45 12.88 -148.98 -1.92 -3.37 16 24 Si 0.77 -3.48 30.82 68.60 2.11 -1.37 16 25 C 0.09 -0.36 10.43 83.09 0.87 0.51 16 26 N -0.58 1.24 6.07 -187.72 -1.14 0.10 16 27 C 0.07 0.26 7.26 38.96 0.28 0.55 16 28 C -0.07 -0.48 9.60 22.63 0.22 -0.27 16 29 H 0.08 -0.77 6.83 -2.38 -0.02 -0.79 16 30 H 0.09 -0.51 5.45 -2.39 -0.01 -0.52 16 31 H 0.09 -0.91 8.08 -2.39 -0.02 -0.93 16 32 H 0.11 -0.50 8.07 -2.39 -0.02 -0.52 16 33 H 0.06 0.41 7.23 -2.39 -0.02 0.40 16 34 H 0.06 0.86 7.63 -2.39 -0.02 0.84 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.17 7.02 -2.39 -0.02 0.16 16 37 H 0.08 -0.01 8.14 -2.39 -0.02 -0.02 16 38 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.06 -0.04 6.24 -2.38 -0.01 -0.06 16 42 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.09 -0.28 8.14 -2.38 -0.02 -0.30 16 46 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 47 H 0.17 -0.73 3.99 -2.91 -0.01 -0.75 16 48 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 49 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 50 H 0.38 -1.12 8.70 -74.05 -0.64 -1.77 16 51 H -0.31 -1.30 7.11 99.48 0.71 -0.60 16 52 H -0.27 0.74 7.00 99.48 0.70 1.44 16 53 H 0.21 -2.22 6.27 -2.91 -0.02 -2.23 16 54 H 0.43 -3.20 8.96 -92.70 -0.83 -4.03 16 55 H 0.12 0.94 7.77 -2.91 -0.02 0.91 16 Total: 0.00 -23.60 429.37 0.69 -22.91 By element: Atomic # 1 Polarization: -7.68 SS G_CDS: -0.53 Total: -8.20 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.15 Total: 7.35 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: -3.58 Total: -3.36 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -3.47 Total: -17.33 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.11 Total: -1.37 kcal Total: -23.60 0.69 -22.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_12335838.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.414 kcal (2) G-P(sol) polarization free energy of solvation -23.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds