Wall clock time and date at job start Tue Mar 9 2021 13:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 120.00167 * 2 1 4 4 C 1.52995 * 109.46933 * 90.00220 * 3 2 1 5 5 H 1.08994 * 112.85309 * 43.80546 * 4 3 2 6 6 C 1.53778 * 113.61209 * 175.00255 * 4 3 2 7 7 C 1.53791 * 87.08156 * 140.06318 * 6 4 3 8 8 H 1.08994 * 113.61240 * 89.11619 * 7 6 4 9 9 O 1.42900 * 113.61258 * 219.92950 * 7 6 4 10 10 C 1.42899 * 114.00161 * 208.46705 * 9 7 6 11 11 C 1.52998 * 109.46933 * 60.00251 * 10 9 7 12 12 C 1.52993 * 109.47170 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47175 * 300.00618 * 10 9 7 14 14 C 1.53778 * 87.07889 * 334.56551 * 7 6 4 15 15 C 1.34777 * 120.00417 * 180.02562 * 2 1 3 16 16 O 1.21625 * 120.00501 * 186.50759 * 15 2 1 17 17 C 1.47269 * 119.99525 * 6.50570 * 15 2 1 18 18 C 1.36775 * 126.94112 * 7.92402 * 17 15 2 19 19 N 1.34657 * 108.39242 * 179.86968 * 18 17 15 20 20 C 1.46498 * 124.84860 * 180.13288 * 19 18 17 21 21 C 1.36446 * 110.30017 * 0.40960 * 19 18 17 22 22 C 1.50704 * 125.56978 * 179.76908 * 21 19 18 23 23 O 1.42894 * 109.47521 * 330.00159 * 22 21 19 24 24 Si 1.86301 * 109.47026 * 209.99783 * 22 21 19 25 25 C 1.34485 * 108.85809 * 359.74662 * 21 19 18 26 26 H 1.08999 * 109.47307 * 95.89107 * 1 2 3 27 27 H 1.08991 * 109.46906 * 215.89017 * 1 2 3 28 28 H 1.09006 * 109.47014 * 335.89178 * 1 2 3 29 29 H 1.08999 * 109.47022 * 329.99947 * 3 2 1 30 30 H 1.08997 * 109.47256 * 210.00272 * 3 2 1 31 31 H 1.08997 * 113.62059 * 25.51484 * 6 4 3 32 32 H 1.09002 * 113.61729 * 254.60847 * 6 4 3 33 33 H 1.09008 * 109.46567 * 60.00066 * 11 10 9 34 34 H 1.08992 * 109.47445 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47259 * 300.00582 * 11 10 9 36 36 H 1.08995 * 109.47743 * 60.00415 * 12 10 9 37 37 H 1.09006 * 109.47047 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47506 * 299.99878 * 12 10 9 39 39 H 1.09000 * 109.46933 * 60.00057 * 13 10 9 40 40 H 1.09000 * 109.46741 * 179.97438 * 13 10 9 41 41 H 1.08992 * 109.47350 * 299.99937 * 13 10 9 42 42 H 1.08998 * 113.61145 * 139.97992 * 14 7 6 43 43 H 1.08999 * 113.61307 * 270.88297 * 14 7 6 44 44 H 1.07992 * 125.80198 * 359.97438 * 18 17 15 45 45 H 1.09002 * 109.47726 * 270.31258 * 20 19 18 46 46 H 1.09003 * 109.47193 * 30.31826 * 20 19 18 47 47 H 1.09004 * 109.46930 * 150.31160 * 20 19 18 48 48 H 1.09001 * 109.47030 * 90.00440 * 22 21 19 49 49 H 0.96696 * 114.00258 * 180.02562 * 23 22 21 50 50 H 1.48501 * 109.99931 * 59.99937 * 24 22 21 51 51 H 1.48501 * 110.00087 * 181.32303 * 24 22 21 52 52 H 1.07995 * 126.83830 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 1.4425 5 1 2.7835 0.8930 2.0831 6 6 3.3232 2.9728 1.5553 7 6 2.3915 3.4181 2.6950 8 1 2.7059 3.0677 3.6780 9 8 2.0889 4.8146 2.6744 10 6 1.8079 5.3675 3.9618 11 6 3.0232 5.1823 4.8726 12 6 1.4990 6.8591 3.8198 13 6 0.6002 4.6527 4.5713 14 6 1.3078 2.5413 2.0458 15 6 2.1389 -1.1672 -0.0005 16 8 3.3493 -1.1706 0.1188 17 6 1.4097 -2.4384 -0.1456 18 6 0.0828 -2.5962 -0.4374 19 7 -0.1883 -3.9144 -0.4834 20 6 -1.5049 -4.4887 -0.7713 21 6 0.9371 -4.6386 -0.2175 22 6 1.0219 -6.1427 -0.1748 23 8 -0.2360 -6.6792 0.2396 24 14 2.3443 -6.6561 1.0329 25 6 1.9583 -3.7910 -0.0001 26 1 -0.3634 -0.1055 -1.0222 27 1 -0.3633 -0.8325 0.6024 28 1 -0.3633 0.9381 0.4198 29 1 1.6085 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5139 31 1 3.2762 3.6158 0.6765 32 1 4.3443 2.7716 1.8796 33 1 3.8836 5.6916 4.4383 34 1 2.8092 5.6044 5.8544 35 1 3.2430 4.1195 4.9736 36 1 0.6330 6.9908 3.1711 37 1 1.2850 7.2810 4.8019 38 1 2.3591 7.3687 3.3854 39 1 0.8200 3.5899 4.6724 40 1 0.3862 5.0742 5.5534 41 1 -0.2656 4.7845 3.9225 42 1 0.7018 1.9916 2.7660 43 1 0.7097 3.0663 1.3010 44 1 -0.6265 -1.7991 -0.6043 45 1 -2.0578 -4.6149 0.1595 46 1 -2.0558 -3.8207 -1.4335 47 1 -1.3807 -5.4579 -1.2544 48 1 1.2692 -6.5209 -1.1667 49 1 -0.2544 -7.6447 0.2900 50 1 2.0189 -6.1464 2.3893 51 1 2.4598 -8.1363 1.0606 52 1 2.9790 -4.0538 0.2352 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_13287730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:18 Heat of formation + Delta-G solvation = -16.405771 kcal Electronic energy + Delta-G solvation = -30063.204604 eV Core-core repulsion = 26032.268327 eV Total energy + Delta-G solvation = -4030.936277 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50203 -41.10397 -40.17832 -38.36601 -37.84819 -36.33384 -33.93728 -33.65385 -31.88471 -29.65612 -28.40061 -28.33696 -28.00734 -26.96876 -26.56015 -26.11578 -24.05892 -22.52132 -20.90415 -20.63937 -20.57079 -20.13523 -18.50389 -17.97895 -17.75507 -17.24557 -16.92786 -16.80987 -16.59542 -16.08469 -15.87856 -15.59628 -15.49431 -15.30229 -14.59023 -14.53296 -14.45681 -14.32974 -13.98424 -13.89003 -13.68093 -13.47443 -13.36297 -13.34377 -13.23430 -13.18680 -13.16058 -12.87145 -12.77790 -12.70047 -12.66246 -12.50576 -12.15800 -12.07530 -12.00062 -11.77731 -11.33140 -11.20023 -10.91882 -10.79797 -10.34603 -9.74394 -9.45852 -9.14847 -4.90379 0.75496 1.01466 1.48449 1.55915 1.85273 1.99976 2.18546 2.53294 2.74920 3.12006 3.54320 3.63418 3.67172 3.78953 3.82731 3.85807 3.91542 3.97037 3.99639 4.10614 4.13165 4.20755 4.28828 4.36127 4.39081 4.47091 4.49798 4.56651 4.60526 4.65738 4.69055 4.77096 4.77816 4.78843 4.82426 4.84690 4.86833 4.88865 4.92237 4.93186 4.94468 4.97538 5.04454 5.13783 5.19332 5.32028 5.35609 5.39163 5.60565 5.72941 6.02265 6.24805 6.42906 6.45990 6.51054 7.29583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.610 5.610 3 C 0.133 3.867 4 C -0.116 4.116 5 H 0.073 0.927 6 C -0.128 4.128 7 C 0.060 3.940 8 H 0.088 0.912 9 O -0.378 6.378 10 C 0.098 3.902 11 C -0.178 4.178 12 C -0.138 4.138 13 C -0.172 4.172 14 C -0.136 4.136 15 C 0.582 3.418 16 O -0.591 6.591 17 C -0.259 4.259 18 C 0.050 3.950 19 N -0.429 5.429 20 C 0.072 3.928 21 C 0.015 3.985 22 C -0.045 4.045 23 O -0.553 6.553 24 Si 0.762 3.238 25 C -0.163 4.163 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.220 0.780 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.400 0.600 50 H -0.311 1.311 51 H -0.270 1.270 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -1.037 -1.543 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.342 5.342 3 C 0.010 3.990 4 C -0.136 4.136 5 H 0.091 0.909 6 C -0.166 4.166 7 C 0.002 3.998 8 H 0.106 0.894 9 O -0.298 6.298 10 C 0.059 3.941 11 C -0.236 4.236 12 C -0.195 4.195 13 C -0.229 4.229 14 C -0.173 4.173 15 C 0.374 3.626 16 O -0.473 6.473 17 C -0.269 4.269 18 C -0.086 4.086 19 N -0.103 5.103 20 C -0.068 4.068 21 C -0.094 4.094 22 C -0.154 4.154 23 O -0.363 6.363 24 Si 0.667 3.333 25 C -0.187 4.187 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.236 0.764 45 H 0.095 0.905 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.252 0.748 50 H -0.239 1.239 51 H -0.195 1.195 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.471 -0.929 -0.993 6.612 hybrid contribution -0.556 -0.939 0.434 1.175 sum -7.027 -1.869 -0.560 7.293 Atomic orbital electron populations 1.22536 0.77954 1.04849 1.03015 1.47682 1.08062 1.05044 1.73364 1.21451 0.97376 0.84513 0.95644 1.22545 0.97867 0.95957 0.97239 0.90890 1.23209 0.98159 0.95956 0.99316 1.23636 0.96537 0.81183 0.98418 0.89425 1.88005 1.89407 1.22994 1.29415 1.21665 0.94234 0.94756 0.83412 1.22460 0.98248 1.02245 1.00608 1.21782 1.02187 0.92445 1.03114 1.22424 0.98044 1.00642 1.01806 1.23537 0.96525 0.96744 1.00511 1.17749 0.86083 0.83573 0.75149 1.90732 1.15943 1.87835 1.52751 1.20304 0.94615 0.92709 1.19235 1.23426 0.96631 0.86297 1.02254 1.43842 1.09753 1.05538 1.51150 1.22326 0.80297 1.01107 1.03105 1.19936 0.87113 0.92573 1.09820 1.24363 0.94300 0.89390 1.07394 1.86481 1.31136 1.28053 1.90653 0.93493 0.85390 0.78362 0.76092 1.21723 0.98960 0.90466 1.07513 0.90128 0.89816 0.89017 0.87924 0.91692 0.88773 0.91452 0.92306 0.90384 0.92367 0.92033 0.89826 0.92393 0.92472 0.90723 0.91897 0.91166 0.88525 0.76432 0.90525 0.87704 0.88754 0.87974 0.74821 1.23900 1.19548 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.33 8.66 127.77 1.11 0.78 16 2 N -0.61 -1.87 2.87 -850.86 -2.44 -4.31 16 3 C 0.13 0.33 5.17 86.38 0.45 0.78 16 4 C -0.12 -0.32 3.96 -10.27 -0.04 -0.36 16 5 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 6 C -0.13 -0.38 7.47 31.12 0.23 -0.14 16 7 C 0.06 0.15 2.80 31.12 0.09 0.23 16 8 H 0.09 0.20 5.59 -2.39 -0.01 0.18 16 9 O -0.38 -1.85 10.00 -148.98 -1.49 -3.34 16 10 C 0.10 0.15 1.12 -10.80 -0.01 0.14 16 11 C -0.18 -0.10 8.38 71.98 0.60 0.50 16 12 C -0.14 -0.02 8.84 71.98 0.64 0.62 16 13 C -0.17 0.11 8.36 71.98 0.60 0.71 16 14 C -0.14 0.02 7.08 31.12 0.22 0.24 16 15 C 0.58 6.21 7.64 86.62 0.66 6.87 16 16 O -0.59 -11.31 16.63 -4.11 -0.07 -11.38 16 17 C -0.26 -1.92 6.10 -19.04 -0.12 -2.03 16 18 C 0.05 0.02 9.26 83.92 0.78 0.80 16 19 N -0.43 -0.40 3.09 -533.23 -1.65 -2.05 16 20 C 0.07 -0.38 9.81 127.77 1.25 0.87 16 21 C 0.01 0.06 6.17 40.98 0.25 0.31 16 22 C -0.04 0.06 2.86 71.24 0.20 0.26 16 23 O -0.55 1.33 10.29 -148.98 -1.53 -0.21 16 24 Si 0.76 0.01 31.12 68.60 2.13 2.14 16 25 C -0.16 -1.21 9.51 23.62 0.22 -0.99 16 26 H 0.08 -0.77 7.30 -2.39 -0.02 -0.79 16 27 H 0.08 -0.52 5.47 -2.39 -0.01 -0.53 16 28 H 0.09 -0.77 7.72 -2.38 -0.02 -0.79 16 29 H 0.10 -0.25 7.78 -2.39 -0.02 -0.26 16 30 H 0.06 0.46 7.52 -2.39 -0.02 0.45 16 31 H 0.09 0.24 8.10 -2.39 -0.02 0.22 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.08 -0.14 8.14 -2.39 -0.02 -0.15 16 35 H 0.06 0.04 6.23 -2.39 -0.01 0.03 16 36 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 38 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.06 -0.02 7.01 -2.39 -0.02 -0.04 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.10 -0.13 7.90 -2.39 -0.02 -0.15 16 44 H 0.22 -1.64 4.46 -2.91 -0.01 -1.65 16 45 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.10 -1.09 8.13 -2.39 -0.02 -1.11 16 47 H 0.09 -0.48 6.73 -2.38 -0.02 -0.50 16 48 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 49 H 0.40 -4.04 8.74 -74.06 -0.65 -4.69 16 50 H -0.31 -3.06 7.11 99.48 0.71 -2.35 16 51 H -0.27 -0.50 7.11 99.48 0.71 0.20 16 52 H 0.15 0.97 6.89 -2.91 -0.02 0.95 16 Total: 0.00 -23.54 404.50 2.39 -21.15 By element: Atomic # 1 Polarization: -11.88 SS G_CDS: 0.30 Total: -11.59 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 7.14 Total: 9.59 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -4.09 Total: -6.36 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -3.09 Total: -14.92 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.13 Total: 2.14 kcal Total: -23.54 2.39 -21.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_13287730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.740 kcal (2) G-P(sol) polarization free energy of solvation -23.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds