Wall clock time and date at job start Tue Mar 9 2021 13:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46506 * 119.99489 * 2 1 4 4 C 1.52996 * 109.47057 * 270.00201 * 3 2 1 5 5 H 1.08996 * 112.85479 * 45.33828 * 4 3 2 6 6 C 1.53785 * 113.60942 * 176.53616 * 4 3 2 7 7 C 1.53783 * 87.08145 * 139.98319 * 6 4 3 8 8 H 1.08992 * 113.61977 * 89.19623 * 7 6 4 9 9 O 1.42905 * 113.61150 * 220.01788 * 7 6 4 10 10 C 1.42900 * 113.99965 * 209.99512 * 9 7 6 11 11 C 1.52999 * 109.46810 * 59.99732 * 10 9 7 12 12 C 1.52994 * 109.47333 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.46923 * 300.00281 * 10 9 7 14 14 C 1.53787 * 113.61469 * 274.13645 * 4 3 2 15 15 C 1.34770 * 120.00065 * 180.02562 * 2 1 3 16 16 O 1.21583 * 119.99903 * 185.03223 * 15 2 1 17 17 C 1.47535 * 120.00245 * 5.03318 * 15 2 1 18 18 C 1.40139 * 120.19088 * 126.83473 * 17 15 2 19 19 O 1.35649 * 120.14991 * 0.04589 * 18 17 15 20 20 C 1.38713 * 119.69608 * 180.02562 * 18 17 15 21 21 C 1.38054 * 120.08836 * 359.97438 * 20 18 17 22 22 C 1.50702 * 119.80585 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.47005 * 300.00086 * 22 21 20 24 24 Si 1.86301 * 109.46814 * 180.02562 * 22 21 20 25 25 C 1.38552 * 120.38570 * 0.27572 * 21 20 18 26 26 C 1.37780 * 120.30468 * 359.49176 * 25 21 20 27 27 H 1.08999 * 109.46840 * 305.44386 * 1 2 3 28 28 H 1.09001 * 109.47384 * 65.44522 * 1 2 3 29 29 H 1.09002 * 109.46736 * 185.44571 * 1 2 3 30 30 H 1.08994 * 109.47080 * 30.00535 * 3 2 1 31 31 H 1.09003 * 109.46278 * 150.00179 * 3 2 1 32 32 H 1.09003 * 113.60986 * 254.52786 * 6 4 3 33 33 H 1.08994 * 113.61552 * 25.42882 * 6 4 3 34 34 H 1.09001 * 109.47042 * 60.00464 * 11 10 9 35 35 H 1.09001 * 109.47188 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47566 * 299.99961 * 11 10 9 37 37 H 1.08999 * 109.46893 * 59.99437 * 12 10 9 38 38 H 1.09001 * 109.47362 * 180.02562 * 12 10 9 39 39 H 1.09011 * 109.46865 * 300.00420 * 12 10 9 40 40 H 1.08998 * 109.47479 * 60.00023 * 13 10 9 41 41 H 1.09006 * 109.46784 * 180.02562 * 13 10 9 42 42 H 1.08998 * 109.47264 * 299.99681 * 13 10 9 43 43 H 1.08994 * 113.61385 * 334.57609 * 14 4 3 44 44 H 1.09006 * 113.61180 * 105.47427 * 14 4 3 45 45 H 0.96695 * 113.99884 * 269.97375 * 19 18 17 46 46 H 1.08001 * 119.95295 * 180.02562 * 20 18 17 47 47 H 1.08996 * 109.46896 * 60.00148 * 22 21 20 48 48 H 0.96697 * 113.99758 * 180.02562 * 23 22 21 49 49 H 1.48497 * 110.00201 * 60.00090 * 24 22 21 50 50 H 1.48506 * 109.99781 * 181.31866 * 24 22 21 51 51 H 1.08002 * 119.84479 * 179.71975 * 25 21 20 52 52 H 1.07998 * 120.05263 * 180.25091 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5714 1.6134 -2.0769 6 6 3.1443 3.0794 -1.5543 7 6 3.9735 2.4786 -2.7016 8 1 3.5099 2.5922 -3.6815 9 8 5.3452 2.8789 -2.6870 10 6 5.9481 2.9352 -3.9814 11 6 5.1933 3.9417 -4.8521 12 6 7.4081 3.3716 -3.8455 13 6 5.8883 1.5519 -4.6324 14 6 3.7243 1.1028 -2.0572 15 6 2.1389 -1.1671 -0.0005 16 8 3.3513 -1.1692 0.0918 17 6 1.4056 -2.4424 -0.1132 18 6 1.7567 -3.3723 -1.1010 19 8 2.7735 -3.1047 -1.9581 20 6 1.0599 -4.5678 -1.1981 21 6 0.0260 -4.8392 -0.3245 22 6 -0.7271 -6.1398 -0.4360 23 8 -1.3304 -6.2316 -1.7281 24 14 -2.0512 -6.2048 0.8730 25 6 -0.3275 -3.9201 0.6502 26 6 0.3568 -2.7296 0.7641 27 1 -0.3633 0.5960 0.8372 28 1 -0.3634 0.4271 -0.9347 29 1 -0.3633 -1.0231 0.0975 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 2.4771 3.8812 -1.8711 33 1 3.7370 3.3420 -0.6781 34 1 5.2359 4.9272 -4.3883 35 1 5.6533 3.9850 -5.8393 36 1 4.1532 3.6303 -4.9490 37 1 7.9455 2.6543 -3.2252 38 1 7.8679 3.4150 -4.8328 39 1 7.4511 4.3571 -3.3814 40 1 4.8482 1.2406 -4.7293 41 1 6.3485 1.5948 -5.6196 42 1 6.4259 0.8349 -4.0121 43 1 4.4759 0.8239 -1.3187 44 1 3.5249 0.3110 -2.7794 45 1 2.4978 -2.6494 -2.7654 46 1 1.3273 -5.2876 -1.9575 47 1 -0.0372 -6.9721 -0.2971 48 1 -1.8331 -7.0452 -1.8705 49 1 -2.9982 -5.0751 0.6941 50 1 -2.7803 -7.4961 0.7941 51 1 -1.1407 -4.1394 1.3262 52 1 0.0805 -2.0179 1.5279 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_13422076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:44 Heat of formation + Delta-G solvation = -87.620963 kcal Electronic energy + Delta-G solvation = -32159.532289 eV Core-core repulsion = 27899.563088 eV Total energy + Delta-G solvation = -4259.969202 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87595 -40.92571 -39.97333 -38.57443 -38.30845 -37.36455 -36.35905 -33.94123 -33.03597 -31.18776 -29.71954 -28.39043 -28.38782 -27.97194 -26.85326 -26.48087 -24.14503 -23.88378 -22.77174 -21.14090 -20.64952 -20.53422 -19.11965 -18.59698 -18.39456 -17.87230 -17.67747 -17.17331 -16.76631 -16.69854 -16.08493 -15.91227 -15.83516 -15.66865 -15.58874 -15.15082 -14.81180 -14.58175 -14.42523 -14.10309 -13.97410 -13.94356 -13.58999 -13.50410 -13.42530 -13.34358 -13.31624 -13.17834 -12.93184 -12.79519 -12.70832 -12.64204 -12.55533 -12.25662 -12.15298 -12.05579 -11.74842 -11.65409 -11.38138 -11.22889 -10.92592 -10.57467 -10.36941 -9.97618 -9.84160 -9.64921 -4.89314 -0.28455 0.11222 1.27562 1.53035 1.63191 1.90885 1.96088 2.38461 2.73358 3.02975 3.22837 3.36959 3.55976 3.63813 3.71912 3.79760 3.81463 3.83584 3.88259 3.97059 4.07172 4.08475 4.12958 4.23130 4.28951 4.31397 4.37081 4.48553 4.57683 4.58929 4.60907 4.63969 4.72748 4.74705 4.75885 4.79508 4.84025 4.86067 4.88556 4.91327 4.92405 5.01179 5.02082 5.09323 5.09970 5.19968 5.25303 5.29175 5.31115 5.38526 5.52094 5.57772 6.26581 6.42466 6.55141 6.60195 7.06976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.605 5.605 3 C 0.127 3.873 4 C -0.114 4.114 5 H 0.106 0.894 6 C -0.121 4.121 7 C 0.059 3.941 8 H 0.099 0.901 9 O -0.385 6.385 10 C 0.097 3.903 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.172 4.172 14 C -0.140 4.140 15 C 0.559 3.441 16 O -0.561 6.561 17 C -0.167 4.167 18 C 0.141 3.859 19 O -0.502 6.502 20 C -0.132 4.132 21 C -0.042 4.042 22 C -0.095 4.095 23 O -0.557 6.557 24 Si 0.770 3.230 25 C -0.126 4.126 26 C -0.063 4.063 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.404 0.596 46 H 0.135 0.865 47 H 0.095 0.905 48 H 0.397 0.603 49 H -0.284 1.284 50 H -0.289 1.289 51 H 0.162 0.838 52 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 0.562 0.205 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.337 5.337 3 C 0.004 3.996 4 C -0.134 4.134 5 H 0.124 0.876 6 C -0.159 4.159 7 C 0.001 3.999 8 H 0.117 0.883 9 O -0.304 6.304 10 C 0.058 3.942 11 C -0.231 4.231 12 C -0.196 4.196 13 C -0.229 4.229 14 C -0.178 4.178 15 C 0.348 3.652 16 O -0.439 6.439 17 C -0.171 4.171 18 C 0.095 3.905 19 O -0.314 6.314 20 C -0.151 4.151 21 C -0.043 4.043 22 C -0.203 4.203 23 O -0.367 6.367 24 Si 0.673 3.327 25 C -0.143 4.143 26 C -0.081 4.081 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.263 0.737 46 H 0.153 0.847 47 H 0.113 0.887 48 H 0.248 0.752 49 H -0.210 1.210 50 H -0.216 1.216 51 H 0.179 0.821 52 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.944 0.872 0.928 7.060 hybrid contribution -0.212 -0.696 -1.906 2.040 sum -7.156 0.176 -0.977 7.225 Atomic orbital electron populations 1.22459 0.77221 1.05231 1.03912 1.47828 1.08321 1.05018 1.72486 1.21508 0.97517 0.84414 0.96130 1.22662 0.97308 0.96357 0.97047 0.87622 1.23151 0.97597 0.96548 0.98567 1.23793 0.82336 0.94708 0.99024 0.88322 1.88025 1.24988 1.88306 1.29127 1.21683 0.94258 0.94874 0.83366 1.22420 1.00793 0.99281 1.00593 1.21794 0.93067 1.01686 1.03101 1.22426 1.02347 0.96595 1.01567 1.23439 0.97741 0.96766 0.99812 1.18374 0.86560 0.84242 0.76057 1.90818 1.15443 1.87574 1.50063 1.20354 0.99752 0.95465 1.01535 1.18568 0.87560 0.92560 0.91795 1.84801 1.31942 1.80648 1.34030 1.21286 0.95748 0.97057 1.00997 1.19569 0.94447 0.95331 0.94918 1.25171 1.04298 0.97130 0.93665 1.86524 1.71299 1.47000 1.31857 0.93989 0.76902 0.77154 0.84623 1.21166 1.01217 0.93043 0.98900 1.21372 0.91808 0.97459 0.97491 0.89159 0.91037 0.88895 0.87428 0.91937 0.89059 0.89847 0.91944 0.90324 0.91836 0.92871 0.89568 0.92044 0.92320 0.90344 0.93230 0.91913 0.92749 0.73722 0.84716 0.88720 0.75214 1.21048 1.21606 0.82128 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.35 10.03 127.77 1.28 0.93 16 2 N -0.60 -0.54 2.87 -850.54 -2.44 -2.98 16 3 C 0.13 0.09 5.31 86.38 0.46 0.55 16 4 C -0.11 -0.01 3.96 -10.27 -0.04 -0.05 16 5 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.12 -0.03 7.47 31.12 0.23 0.20 16 7 C 0.06 0.20 2.82 31.18 0.09 0.29 16 8 H 0.10 0.06 5.54 -2.39 -0.01 0.05 16 9 O -0.38 -3.05 10.00 -148.98 -1.49 -4.54 16 10 C 0.10 0.36 1.11 -10.80 -0.01 0.34 16 11 C -0.17 -0.02 8.38 71.98 0.60 0.59 16 12 C -0.14 -0.38 8.84 71.98 0.64 0.25 16 13 C -0.17 -0.49 8.38 71.98 0.60 0.11 16 14 C -0.14 -0.82 7.13 31.18 0.22 -0.60 16 15 C 0.56 4.42 6.86 86.70 0.59 5.01 16 16 O -0.56 -9.77 15.78 0.27 0.00 -9.76 16 17 C -0.17 -0.78 5.06 -20.01 -0.10 -0.88 16 18 C 0.14 0.90 6.70 22.85 0.15 1.05 16 19 O -0.50 -4.05 12.67 -85.40 -1.08 -5.13 16 20 C -0.13 -0.52 9.53 22.34 0.21 -0.31 16 21 C -0.04 -0.02 5.43 -19.83 -0.11 -0.13 16 22 C -0.09 0.26 2.81 71.24 0.20 0.46 16 23 O -0.56 0.16 12.74 -148.98 -1.90 -1.74 16 24 Si 0.77 -4.08 29.77 68.60 2.04 -2.04 16 25 C -0.13 0.35 8.64 22.24 0.19 0.55 16 26 C -0.06 0.11 7.34 22.52 0.17 0.27 16 27 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.09 -0.64 3.91 -2.39 -0.01 -0.65 16 30 H 0.11 -0.51 8.07 -2.39 -0.02 -0.53 16 31 H 0.06 0.43 7.09 -2.39 -0.02 0.41 16 32 H 0.09 -0.30 8.14 -2.39 -0.02 -0.31 16 33 H 0.08 0.21 8.10 -2.39 -0.02 0.19 16 34 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 -0.06 6.24 -2.39 -0.01 -0.08 16 37 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.06 0.14 7.02 -2.39 -0.02 0.12 16 41 H 0.08 0.00 8.14 -2.38 -0.02 -0.02 16 42 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.06 0.83 7.78 -2.39 -0.02 0.81 16 44 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 45 H 0.40 -0.16 9.06 -74.06 -0.67 -0.83 16 46 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 47 H 0.09 -0.52 7.96 -2.39 -0.02 -0.54 16 48 H 0.40 -3.19 8.74 -74.06 -0.65 -3.83 16 49 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 50 H -0.29 0.10 7.11 99.48 0.71 0.81 16 51 H 0.16 -1.33 4.85 -2.91 -0.01 -1.35 16 52 H 0.17 -1.22 7.09 -2.91 -0.02 -1.24 16 Total: 0.00 -24.62 411.08 0.17 -24.45 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -0.34 Total: -6.91 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.38 Total: 8.65 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -2.44 Total: -2.98 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -4.47 Total: -21.17 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.04 Total: -2.04 kcal Total: -24.62 0.17 -24.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_13422076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.172 kcal (2) G-P(sol) polarization free energy of solvation -24.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds