Wall clock time and date at job start Tue Mar 9 2021 13:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99636 * 2 1 4 4 C 1.52991 * 109.47390 * 89.99672 * 3 2 1 5 5 H 1.08999 * 112.85247 * 43.80165 * 4 3 2 6 6 C 1.53786 * 113.61279 * 174.99773 * 4 3 2 7 7 C 1.53786 * 87.08171 * 139.98014 * 6 4 3 8 8 H 1.08995 * 113.61663 * 89.19751 * 7 6 4 9 9 O 1.42891 * 113.61602 * 220.02046 * 7 6 4 10 10 C 1.42903 * 114.00185 * 209.99654 * 9 7 6 11 11 C 1.53003 * 109.46558 * 60.00242 * 10 9 7 12 12 C 1.53003 * 109.47336 * 179.97438 * 10 9 7 13 13 C 1.52990 * 109.47135 * 299.99909 * 10 9 7 14 14 C 1.53782 * 113.61477 * 272.49356 * 4 3 2 15 15 C 1.34775 * 120.00257 * 179.97438 * 2 1 3 16 16 O 1.21610 * 119.99830 * 181.53848 * 15 2 1 17 17 C 1.47379 * 119.99998 * 1.53774 * 15 2 1 18 18 C 1.36412 * 127.19083 * 339.47418 * 17 15 2 19 19 O 1.33653 * 108.39576 * 179.83223 * 18 17 15 20 20 C 1.34215 * 110.90679 * 0.44617 * 19 18 17 21 21 C 1.50703 * 125.43454 * 179.72420 * 20 19 18 22 22 O 1.42903 * 109.47005 * 244.99862 * 21 20 19 23 23 Si 1.86298 * 109.47250 * 5.00072 * 21 20 19 24 24 C 1.34178 * 109.12281 * 359.72733 * 20 19 18 25 25 H 1.08996 * 109.47219 * 263.75764 * 1 2 3 26 26 H 1.08999 * 109.46542 * 143.75720 * 1 2 3 27 27 H 1.09002 * 109.47458 * 23.75978 * 1 2 3 28 28 H 1.09007 * 109.46578 * 209.99872 * 3 2 1 29 29 H 1.08999 * 109.47136 * 329.98749 * 3 2 1 30 30 H 1.09001 * 113.61261 * 254.52454 * 6 4 3 31 31 H 1.08997 * 113.61522 * 25.43291 * 6 4 3 32 32 H 1.08993 * 109.47594 * 60.00164 * 11 10 9 33 33 H 1.09008 * 109.46834 * 180.02562 * 11 10 9 34 34 H 1.08999 * 109.46769 * 299.99352 * 11 10 9 35 35 H 1.08996 * 109.47096 * 59.99790 * 12 10 9 36 36 H 1.08995 * 109.47222 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.46959 * 300.00586 * 12 10 9 38 38 H 1.09005 * 109.47144 * 59.99839 * 13 10 9 39 39 H 1.09008 * 109.47063 * 179.97438 * 13 10 9 40 40 H 1.09000 * 109.47729 * 299.99769 * 13 10 9 41 41 H 1.09005 * 113.61508 * 334.57088 * 14 4 3 42 42 H 1.09003 * 113.61395 * 105.47187 * 14 4 3 43 43 H 1.08005 * 125.80296 * 359.97438 * 18 17 15 44 44 H 1.08995 * 109.46732 * 125.00210 * 21 20 19 45 45 H 0.96695 * 113.99941 * 179.97438 * 22 21 20 46 46 H 1.48500 * 110.00023 * 299.99941 * 23 21 20 47 47 H 1.48497 * 110.00043 * 61.32231 * 23 21 20 48 48 H 1.07996 * 127.01732 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 1 2.7833 0.8933 2.0832 6 6 3.3231 2.9732 1.5552 7 6 2.3900 3.4196 2.6932 8 1 2.7038 3.0713 3.6772 9 8 2.0859 4.8156 2.6698 10 6 1.8371 5.3780 3.9597 11 6 3.0752 5.2005 4.8408 12 6 1.5246 6.8688 3.8145 13 6 0.6457 4.6673 4.6047 14 6 1.3070 2.5422 2.0435 15 6 2.1389 -1.1672 0.0005 16 8 3.3547 -1.1672 0.0288 17 6 1.4025 -2.4433 -0.0332 18 6 0.1004 -2.6534 0.3150 19 8 -0.1802 -3.9480 0.1372 20 6 0.8957 -4.6142 -0.3101 21 6 0.9457 -6.0893 -0.6143 22 8 1.8470 -6.7317 0.2897 23 14 -0.7562 -6.8217 -0.4196 24 6 1.9194 -3.7571 -0.4431 25 1 -0.3633 -0.1117 1.0215 26 1 -0.3632 -0.8288 -0.6076 27 1 -0.3634 0.9406 -0.4140 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5140 30 1 4.3437 2.7721 1.8809 31 1 3.2771 3.6153 0.6756 32 1 3.9240 5.7068 4.3812 33 1 2.8853 5.6291 5.8249 34 1 3.2982 4.1385 4.9443 35 1 0.6428 6.9957 3.1865 36 1 1.3353 7.2978 4.7984 37 1 2.3737 7.3749 3.3550 38 1 0.8687 3.6053 4.7083 39 1 0.4562 5.0960 5.5889 40 1 -0.2364 4.7938 3.9770 41 1 0.7098 3.0665 1.2974 42 1 0.6999 1.9932 2.7634 43 1 -0.5876 -1.9009 0.6714 44 1 1.2903 -6.2377 -1.6376 45 1 1.9289 -7.6853 0.1521 46 1 -1.2373 -6.6258 0.9715 47 1 -1.6959 -6.1842 -1.3766 48 1 2.9191 -3.9859 -0.7816 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_13456056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:03 Heat of formation + Delta-G solvation = -53.236189 kcal Electronic energy + Delta-G solvation = -27982.362104 eV Core-core repulsion = 24007.647697 eV Total energy + Delta-G solvation = -3974.714407 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.182 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.91774 -41.31506 -40.47155 -38.46581 -37.91339 -36.58446 -34.25784 -33.78998 -32.25371 -29.74129 -28.43176 -28.36352 -27.86886 -26.71240 -26.54617 -24.82536 -23.21857 -22.18228 -20.99750 -20.66576 -20.30783 -18.72756 -18.47452 -17.82143 -17.70555 -17.46715 -17.11275 -16.83206 -16.15835 -15.96076 -15.91918 -15.76070 -15.46617 -14.68661 -14.59631 -14.53207 -14.34833 -14.29162 -14.21005 -13.88304 -13.55261 -13.48768 -13.39916 -13.27588 -13.02871 -12.84981 -12.82040 -12.72455 -12.68769 -12.22584 -12.16938 -12.05331 -11.85983 -11.40735 -11.27965 -11.25390 -11.03318 -10.49332 -10.38488 -9.90064 -9.82894 -5.03824 0.11748 0.68656 1.17492 1.49574 1.68161 1.80171 2.01466 2.03189 2.70833 3.23170 3.33108 3.48194 3.58598 3.67565 3.69070 3.76328 3.78848 3.88523 3.95693 4.02112 4.08126 4.13559 4.15316 4.27742 4.32171 4.40316 4.43944 4.57999 4.58550 4.62139 4.69884 4.71100 4.75272 4.75945 4.78745 4.79276 4.83515 4.89460 4.91376 4.98495 5.00202 5.10687 5.11758 5.29105 5.30489 5.33443 5.46860 5.70109 6.15244 6.39507 6.81721 6.94935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.602 5.602 3 C 0.130 3.870 4 C -0.118 4.118 5 H 0.074 0.926 6 C -0.130 4.130 7 C 0.060 3.940 8 H 0.089 0.911 9 O -0.378 6.378 10 C 0.098 3.902 11 C -0.178 4.178 12 C -0.138 4.138 13 C -0.172 4.172 14 C -0.134 4.134 15 C 0.581 3.419 16 O -0.581 6.581 17 C -0.259 4.259 18 C 0.039 3.961 19 O -0.185 6.185 20 C -0.026 4.026 21 C -0.050 4.050 22 O -0.564 6.564 23 Si 0.819 3.181 24 C -0.146 4.146 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.263 0.737 44 H 0.121 0.879 45 H 0.413 0.587 46 H -0.302 1.302 47 H -0.286 1.286 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -1.934 -0.450 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.333 5.333 3 C 0.008 3.992 4 C -0.137 4.137 5 H 0.092 0.908 6 C -0.168 4.168 7 C 0.002 3.998 8 H 0.107 0.893 9 O -0.298 6.298 10 C 0.059 3.941 11 C -0.236 4.236 12 C -0.196 4.196 13 C -0.229 4.229 14 C -0.171 4.171 15 C 0.371 3.629 16 O -0.462 6.462 17 C -0.263 4.263 18 C -0.030 4.030 19 O -0.082 6.082 20 C -0.074 4.074 21 C -0.158 4.158 22 O -0.376 6.376 23 Si 0.723 3.277 24 C -0.166 4.166 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.138 0.862 45 H 0.267 0.733 46 H -0.230 1.230 47 H -0.213 1.213 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.809 -1.204 -0.165 6.916 hybrid contribution 1.023 0.542 0.260 1.186 sum -5.786 -0.663 0.095 5.825 Atomic orbital electron populations 1.22629 0.77356 1.05887 1.03420 1.47732 1.08454 1.04933 1.72141 1.21572 0.97562 0.83996 0.96094 1.22550 0.98208 0.96115 0.96850 0.90758 1.23229 0.98179 0.95896 0.99505 1.23632 0.96504 0.81280 0.98398 0.89306 1.88007 1.89808 1.22881 1.29117 1.21671 0.94372 0.94673 0.83346 1.22464 0.98055 1.02259 1.00790 1.21785 1.02174 0.92476 1.03125 1.22422 0.98131 1.00688 1.01668 1.23529 0.96403 0.96614 1.00575 1.17528 0.86189 0.83406 0.75746 1.90776 1.15323 1.87811 1.52329 1.21513 0.95913 0.94807 1.14094 1.26014 0.96146 0.83157 0.97664 1.83761 1.37835 1.21055 1.65567 1.21759 0.85405 0.95257 1.04983 1.24193 1.08704 0.85974 0.96897 1.86426 1.65497 1.28240 1.57477 0.94005 0.70289 0.86710 0.76741 1.22593 1.00059 0.90279 1.03637 0.89912 0.89660 0.87740 0.91624 0.87369 0.91507 0.88761 0.92361 0.90375 0.92356 0.92022 0.89814 0.92435 0.92381 0.90717 0.91860 0.88417 0.90781 0.72187 0.86198 0.73333 1.23021 1.21328 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.36 8.85 127.77 1.13 0.77 16 2 N -0.60 -1.08 2.87 -850.72 -2.44 -3.52 16 3 C 0.13 0.17 5.27 86.37 0.46 0.63 16 4 C -0.12 -0.15 3.96 -10.27 -0.04 -0.20 16 5 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 6 C -0.13 -0.26 7.47 31.12 0.23 -0.03 16 7 C 0.06 0.08 2.82 31.12 0.09 0.17 16 8 H 0.09 0.10 5.54 -2.39 -0.01 0.08 16 9 O -0.38 -1.55 10.00 -148.98 -1.49 -3.04 16 10 C 0.10 0.08 1.11 -10.79 -0.01 0.07 16 11 C -0.18 0.00 8.38 71.98 0.60 0.60 16 12 C -0.14 0.04 8.84 71.98 0.64 0.68 16 13 C -0.17 0.25 8.38 71.98 0.60 0.85 16 14 C -0.13 0.23 7.46 31.12 0.23 0.46 16 15 C 0.58 5.85 7.67 86.65 0.66 6.51 16 16 O -0.58 -11.14 16.62 -4.06 -0.07 -11.21 16 17 C -0.26 -1.98 5.96 -19.00 -0.11 -2.09 16 18 C 0.04 0.05 9.89 67.39 0.67 0.72 16 19 O -0.19 -1.03 8.90 4.46 0.04 -0.99 16 20 C -0.03 -0.17 6.22 24.76 0.15 -0.02 16 21 C -0.05 0.04 2.96 71.24 0.21 0.25 16 22 O -0.56 0.05 12.86 -148.98 -1.92 -1.87 16 23 Si 0.82 -2.56 32.09 68.60 2.20 -0.36 16 24 C -0.15 -1.39 10.96 23.65 0.26 -1.13 16 25 H 0.08 -0.91 7.35 -2.39 -0.02 -0.92 16 26 H 0.09 -0.71 5.40 -2.39 -0.01 -0.73 16 27 H 0.10 -1.15 7.82 -2.39 -0.02 -1.17 16 28 H 0.07 0.42 7.44 -2.38 -0.02 0.40 16 29 H 0.11 -0.41 7.56 -2.39 -0.02 -0.43 16 30 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.09 0.17 8.10 -2.39 -0.02 0.15 16 32 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.06 0.01 6.24 -2.39 -0.01 -0.01 16 35 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.06 -0.08 7.02 -2.38 -0.02 -0.10 16 39 H 0.07 -0.24 8.14 -2.38 -0.02 -0.25 16 40 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.10 -0.27 7.90 -2.38 -0.02 -0.29 16 42 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.26 -2.22 5.03 -2.91 -0.01 -2.23 16 44 H 0.12 -0.74 7.96 -2.39 -0.02 -0.76 16 45 H 0.41 -4.97 8.74 -74.06 -0.65 -5.61 16 46 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 47 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 48 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 Total: 0.00 -26.54 385.36 2.44 -24.10 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: 0.35 Total: -11.37 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.77 Total: 8.25 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -2.44 Total: -3.52 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -3.43 Total: -17.10 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.20 Total: -0.36 kcal Total: -26.54 2.44 -24.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_13456056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.135 kcal (2) G-P(sol) polarization free energy of solvation -26.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds