Wall clock time and date at job start Tue Mar 9 2021 13:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00333 * 2 1 4 4 C 1.53005 * 109.46976 * 270.00006 * 3 2 1 5 5 H 1.08996 * 112.85231 * 45.32846 * 4 3 2 6 6 C 1.53776 * 113.61104 * 176.52816 * 4 3 2 7 7 C 1.53780 * 87.08085 * 139.98016 * 6 4 3 8 8 H 1.09000 * 113.62112 * 89.19845 * 7 6 4 9 9 O 1.42904 * 113.61213 * 220.01900 * 7 6 4 10 10 C 1.42907 * 113.99597 * 209.99669 * 9 7 6 11 11 C 1.53001 * 109.47349 * 60.00046 * 10 9 7 12 12 C 1.52998 * 109.46859 * 179.97438 * 10 9 7 13 13 C 1.52994 * 109.47305 * 299.99828 * 10 9 7 14 14 C 1.53784 * 113.61077 * 274.13039 * 4 3 2 15 15 C 1.34774 * 119.99946 * 179.97438 * 2 1 3 16 16 O 1.21637 * 120.00390 * 184.26708 * 15 2 1 17 17 C 1.47189 * 120.00186 * 4.26345 * 15 2 1 18 18 C 1.36010 * 123.46377 * 146.07507 * 17 15 2 19 19 S 1.70447 * 110.81983 * 179.75360 * 18 17 15 20 20 C 1.75505 * 92.44335 * 0.35303 * 19 18 17 21 21 C 1.50702 * 124.71332 * 179.90724 * 20 19 18 22 22 O 1.42895 * 109.47007 * 244.70169 * 21 20 19 23 23 Si 1.86296 * 109.47059 * 4.70092 * 21 20 19 24 24 C 1.32768 * 110.57641 * 359.64551 * 20 19 18 25 25 H 1.08993 * 109.47208 * 264.14763 * 1 2 3 26 26 H 1.09000 * 109.46880 * 24.14925 * 1 2 3 27 27 H 1.09007 * 109.46660 * 144.13959 * 1 2 3 28 28 H 1.09007 * 109.46702 * 29.99705 * 3 2 1 29 29 H 1.08992 * 109.47221 * 149.99835 * 3 2 1 30 30 H 1.09004 * 113.61339 * 254.52743 * 6 4 3 31 31 H 1.08996 * 113.61950 * 25.34344 * 6 4 3 32 32 H 1.09007 * 109.46674 * 59.99605 * 11 10 9 33 33 H 1.08991 * 109.47384 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.47006 * 299.99973 * 11 10 9 35 35 H 1.08998 * 109.47508 * 59.99970 * 12 10 9 36 36 H 1.08999 * 109.47406 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47061 * 299.99865 * 12 10 9 38 38 H 1.09000 * 109.47440 * 60.00184 * 13 10 9 39 39 H 1.08997 * 109.47537 * 180.02562 * 13 10 9 40 40 H 1.09000 * 109.47502 * 300.00382 * 13 10 9 41 41 H 1.08994 * 113.61552 * 334.57372 * 14 4 3 42 42 H 1.09001 * 113.61085 * 105.47066 * 14 4 3 43 43 H 1.08001 * 124.59108 * 0.02562 * 18 17 15 44 44 H 1.08999 * 109.47091 * 124.70497 * 21 20 19 45 45 H 0.96703 * 114.00632 * 60.00107 * 22 21 20 46 46 H 1.48500 * 110.00126 * 58.68290 * 23 21 20 47 47 H 1.48503 * 110.00012 * 179.97438 * 23 21 20 48 48 H 1.07999 * 123.46089 * 180.26248 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 1.5717 1.6131 -2.0770 6 6 3.1444 3.0791 -1.5545 7 6 3.9737 2.4782 -2.7016 8 1 3.5102 2.5917 -3.6816 9 8 5.3455 2.8784 -2.6869 10 6 5.9484 2.9346 -3.9814 11 6 5.1938 3.9410 -4.8523 12 6 7.4081 3.3722 -3.8454 13 6 5.8887 1.5513 -4.6323 14 6 3.7245 1.1025 -2.0571 15 6 2.1389 -1.1672 0.0005 16 8 3.3527 -1.1687 0.0789 17 6 1.4060 -2.4402 -0.0937 18 6 1.8876 -3.5369 -0.7380 19 16 0.7813 -4.8301 -0.6425 20 6 -0.3689 -3.8767 0.2785 21 6 -1.7023 -4.3793 0.7689 22 8 -2.7511 -3.6527 0.1255 23 14 -1.8675 -6.1917 0.3704 24 6 0.1013 -2.6529 0.4881 25 1 -0.3633 -0.1048 1.0222 26 1 -0.3633 0.9377 -0.4204 27 1 -0.3633 -0.8329 -0.6021 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1383 0.5138 30 1 2.4774 3.8809 -1.8714 31 1 3.7359 3.3424 -0.6777 32 1 5.2364 4.9266 -4.3884 33 1 5.6539 3.9842 -5.8394 34 1 4.1537 3.6297 -4.9491 35 1 7.9461 2.6555 -3.2249 36 1 7.8680 3.4155 -4.8327 37 1 7.4503 4.3578 -3.3819 38 1 4.8486 1.2399 -4.7292 39 1 6.3489 1.5940 -5.6194 40 1 6.4263 0.8342 -4.0119 41 1 4.4760 0.8236 -1.3185 42 1 3.5251 0.3106 -2.7792 43 1 2.8436 -3.5836 -1.2383 44 1 -1.7701 -4.2367 1.8474 45 1 -2.7524 -3.7340 -0.8381 46 1 -0.7642 -6.9544 1.0076 47 1 -3.1782 -6.6996 0.8495 48 1 -0.4366 -1.8943 1.0372 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15093190_6894386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:53 Heat of formation + Delta-G solvation = -43.067084 kcal Electronic energy + Delta-G solvation = -28008.556520 eV Core-core repulsion = 24158.353758 eV Total energy + Delta-G solvation = -3850.202762 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.154 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50780 -40.64015 -38.91519 -38.35975 -37.08757 -36.39518 -33.87203 -31.77284 -30.01063 -28.41536 -28.38519 -27.70115 -26.85198 -26.58965 -25.35989 -23.35531 -21.50524 -20.88274 -20.54211 -20.07322 -18.87369 -17.99545 -17.77240 -17.36514 -17.16287 -16.78371 -16.26878 -16.03482 -15.96958 -15.66395 -15.44703 -15.15306 -14.64613 -14.57604 -14.41691 -14.12548 -14.07929 -13.77720 -13.69845 -13.45486 -13.42581 -13.34670 -13.24443 -12.94343 -12.88576 -12.76181 -12.70344 -12.51873 -12.29967 -12.25541 -12.05744 -11.77998 -11.73833 -11.38377 -11.23657 -11.05584 -10.53151 -10.37280 -10.02101 -9.68922 -9.43248 -5.12732 -0.28069 0.38468 0.69498 0.92191 1.24162 1.60685 1.91183 1.93806 2.14269 2.73539 3.34950 3.48464 3.62890 3.63743 3.73051 3.80935 3.83137 3.88562 3.97195 3.99997 4.07551 4.12969 4.25224 4.33675 4.38635 4.46175 4.47085 4.56244 4.58718 4.63596 4.71969 4.74877 4.79242 4.80118 4.84043 4.86098 4.88314 4.90215 4.91679 4.96881 5.01108 5.09785 5.16686 5.19849 5.29500 5.31286 5.38708 5.53946 6.27716 6.42385 6.73870 7.06381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.604 5.604 3 C 0.126 3.874 4 C -0.114 4.114 5 H 0.107 0.893 6 C -0.121 4.121 7 C 0.060 3.940 8 H 0.100 0.900 9 O -0.385 6.385 10 C 0.097 3.903 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.172 4.172 14 C -0.141 4.141 15 C 0.571 3.429 16 O -0.577 6.577 17 C -0.176 4.176 18 C -0.192 4.192 19 S 0.227 5.773 20 C -0.241 4.241 21 C -0.021 4.021 22 O -0.544 6.544 23 Si 0.723 3.277 24 C -0.086 4.086 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.169 0.831 44 H 0.123 0.877 45 H 0.398 0.602 46 H -0.269 1.269 47 H -0.271 1.271 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 0.378 -4.814 7.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.335 5.335 3 C 0.004 3.996 4 C -0.133 4.133 5 H 0.126 0.874 6 C -0.159 4.159 7 C 0.002 3.998 8 H 0.118 0.882 9 O -0.305 6.305 10 C 0.058 3.942 11 C -0.231 4.231 12 C -0.196 4.196 13 C -0.230 4.230 14 C -0.179 4.179 15 C 0.359 3.641 16 O -0.458 6.458 17 C -0.194 4.194 18 C -0.331 4.331 19 S 0.494 5.506 20 C -0.358 4.358 21 C -0.134 4.134 22 O -0.352 6.352 23 Si 0.626 3.374 24 C -0.115 4.115 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.186 0.814 44 H 0.140 0.860 45 H 0.248 0.752 46 H -0.195 1.195 47 H -0.196 1.196 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.583 -1.705 -4.220 7.203 hybrid contribution 0.593 1.646 0.838 1.940 sum -4.990 -0.058 -3.382 6.028 Atomic orbital electron populations 1.22398 0.77197 1.05075 1.02827 1.47768 1.08334 1.05123 1.72293 1.21535 0.97491 0.84415 0.96205 1.22676 0.97414 0.96331 0.96898 0.87439 1.23150 0.97622 0.96554 0.98550 1.23784 0.82342 0.94606 0.99050 0.88248 1.88025 1.24975 1.88305 1.29164 1.21691 0.94263 0.94902 0.83353 1.22423 1.00821 0.99271 1.00604 1.21793 0.93059 1.01670 1.03119 1.22425 1.02339 0.96578 1.01609 1.23450 0.97823 0.96815 0.99811 1.18038 0.86298 0.84093 0.75631 1.90794 1.15378 1.87871 1.51718 1.20196 0.97113 0.94924 1.07183 1.25795 1.05557 0.97675 1.04050 1.82934 1.06625 1.11942 1.49086 1.24932 1.02976 0.98749 1.09183 1.24401 0.82249 1.07086 0.99693 1.86499 1.48779 1.73483 1.26435 0.94285 0.79595 0.72969 0.90542 1.21519 0.92454 0.97549 1.00018 0.91177 0.88660 0.89808 0.87555 0.92001 0.88976 0.89898 0.91963 0.90287 0.91815 0.92853 0.89539 0.92081 0.92369 0.90275 0.93178 0.91782 0.92928 0.81362 0.85964 0.75200 1.19457 1.19587 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.38 8.88 127.77 1.13 0.76 16 2 N -0.60 -1.01 2.87 -850.93 -2.44 -3.46 16 3 C 0.13 0.15 5.24 86.38 0.45 0.61 16 4 C -0.11 -0.02 3.96 -10.27 -0.04 -0.06 16 5 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.12 -0.03 7.47 31.12 0.23 0.21 16 7 C 0.06 0.20 2.82 31.18 0.09 0.28 16 8 H 0.10 0.05 5.54 -2.39 -0.01 0.03 16 9 O -0.38 -2.94 10.00 -148.98 -1.49 -4.43 16 10 C 0.10 0.32 1.11 -10.80 -0.01 0.31 16 11 C -0.17 0.04 8.38 71.98 0.60 0.64 16 12 C -0.14 -0.32 8.84 71.98 0.64 0.31 16 13 C -0.17 -0.40 8.38 71.98 0.60 0.20 16 14 C -0.14 -0.83 7.08 31.18 0.22 -0.61 16 15 C 0.57 4.64 7.51 86.59 0.65 5.29 16 16 O -0.58 -9.53 15.95 -4.15 -0.07 -9.60 16 17 C -0.18 -0.69 5.38 -19.87 -0.11 -0.80 16 18 C -0.19 -0.50 10.67 67.30 0.72 0.22 16 19 S 0.23 -0.59 20.20 -56.49 -1.14 -1.73 16 20 C -0.24 0.64 5.66 24.51 0.14 0.78 16 21 C -0.02 0.09 2.94 71.24 0.21 0.30 16 22 O -0.54 2.65 12.88 -148.98 -1.92 0.73 16 23 Si 0.72 -3.04 30.92 68.60 2.12 -0.92 16 24 C -0.09 0.07 7.88 22.67 0.18 0.25 16 25 H 0.07 -0.51 6.98 -2.39 -0.02 -0.52 16 26 H 0.09 -0.89 8.03 -2.39 -0.02 -0.91 16 27 H 0.08 -0.50 5.76 -2.38 -0.01 -0.51 16 28 H 0.11 -0.42 8.07 -2.38 -0.02 -0.44 16 29 H 0.06 0.45 7.10 -2.39 -0.02 0.43 16 30 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 31 H 0.08 0.21 8.10 -2.39 -0.02 0.19 16 32 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 33 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.06 -0.08 6.24 -2.39 -0.01 -0.10 16 35 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.06 0.12 7.02 -2.39 -0.02 0.10 16 39 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 41 H 0.06 0.81 7.76 -2.39 -0.02 0.79 16 42 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.12 -0.46 7.96 -2.39 -0.02 -0.48 16 45 H 0.40 -5.04 8.70 -74.06 -0.64 -5.68 16 46 H -0.27 -0.26 7.11 99.48 0.71 0.44 16 47 H -0.27 -0.58 7.11 99.48 0.71 0.12 16 48 H 0.17 -0.63 5.48 -2.91 -0.02 -0.64 16 Total: 0.00 -18.61 391.45 1.12 -17.50 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: 0.35 Total: -6.77 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.71 Total: 8.68 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -2.44 Total: -3.46 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -3.47 Total: -13.30 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.12 Total: -0.92 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.14 Total: -1.73 kcal Total: -18.61 1.12 -17.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15093190_6894386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.568 kcal (2) G-P(sol) polarization free energy of solvation -18.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds