Wall clock time and date at job start Tue Mar 9 2021 13:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99995 * 2 1 4 4 C 1.38730 * 120.05681 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94656 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05580 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94365 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.85047 * 350.33286 * 7 6 5 9 9 C 1.53781 * 113.61772 * 121.53000 * 7 6 5 10 10 C 1.53777 * 87.08336 * 140.06093 * 9 7 6 11 11 H 1.09008 * 113.61204 * 89.11878 * 10 9 7 12 12 N 1.46492 * 113.61596 * 219.93501 * 10 9 7 13 13 C 1.34774 * 120.00245 * 205.00267 * 12 10 9 14 14 O 1.21287 * 119.99850 * 0.02562 * 13 12 10 15 15 C 1.50702 * 120.00455 * 179.97438 * 13 12 10 16 16 C 1.52997 * 109.47423 * 179.97438 * 15 13 12 17 17 O 1.42896 * 109.47371 * 179.97438 * 16 15 13 18 18 C 1.35902 * 117.00260 * 180.02562 * 17 16 15 19 19 C 1.38706 * 120.05431 * 180.02562 * 18 17 16 20 20 C 1.38172 * 119.94153 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.97268 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.46824 * 300.00267 * 21 20 19 23 23 Si 1.86299 * 109.47004 * 179.97438 * 21 20 19 24 24 C 1.38239 * 120.05592 * 359.97438 * 20 19 18 25 25 C 1.38288 * 120.11311 * 0.02562 * 24 20 19 26 26 C 1.38125 * 120.05535 * 359.68176 * 25 24 20 27 27 C 1.53775 * 87.07992 * 334.56762 * 10 9 7 28 28 C 1.38263 * 120.11106 * 0.25471 * 6 5 4 29 29 C 1.38145 * 120.05831 * 359.45156 * 28 6 5 30 30 H 1.09004 * 109.46842 * 300.00381 * 1 2 3 31 31 H 1.09003 * 109.47118 * 59.99228 * 1 2 3 32 32 H 1.08993 * 109.47476 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.02440 * 0.03964 * 4 3 2 34 34 H 1.08000 * 119.97081 * 179.97438 * 5 4 3 35 35 H 1.08997 * 113.61673 * 254.61641 * 9 7 6 36 36 H 1.09005 * 113.61396 * 25.51470 * 9 7 6 37 37 H 0.97005 * 120.00166 * 24.99923 * 12 10 9 38 38 H 1.09005 * 109.47006 * 300.00170 * 15 13 12 39 39 H 1.09004 * 109.46891 * 59.99671 * 15 13 12 40 40 H 1.08997 * 109.47576 * 300.00232 * 16 15 13 41 41 H 1.09004 * 109.47268 * 60.00010 * 16 15 13 42 42 H 1.08003 * 120.03248 * 359.97438 * 19 18 17 43 43 H 1.09002 * 109.47217 * 60.00026 * 21 20 19 44 44 H 0.96698 * 114.00275 * 299.99509 * 22 21 20 45 45 H 1.48495 * 109.99939 * 58.68648 * 23 21 20 46 46 H 1.48501 * 109.99716 * 180.02562 * 23 21 20 47 47 H 1.07999 * 119.94669 * 179.97438 * 24 20 19 48 48 H 1.07997 * 119.97529 * 179.97438 * 25 24 20 49 49 H 1.07997 * 120.03493 * 180.32711 * 26 25 24 50 50 H 1.08993 * 113.61636 * 270.87622 * 27 10 9 51 51 H 1.09008 * 113.61006 * 139.97865 * 27 10 9 52 52 H 1.08001 * 119.97186 * 179.70353 * 28 6 5 53 53 H 1.07997 * 120.03134 * 180.25148 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 1 5.0607 4.9459 0.1709 9 6 3.6089 5.9033 -1.1971 10 6 3.5894 7.0881 -0.2170 11 1 4.5555 7.5813 -0.1089 12 7 2.4934 8.0301 -0.4568 13 6 2.6091 9.3134 -0.0615 14 8 3.6209 9.6884 0.4923 15 6 1.4820 10.2826 -0.3087 16 6 1.8662 11.6608 0.2333 17 8 0.7977 12.5800 -0.0016 18 6 0.9792 13.8585 0.4219 19 6 -0.0175 14.8031 0.2267 20 6 0.1698 16.1025 0.6576 21 6 -0.9130 17.1292 0.4464 22 8 -1.1760 17.2633 -0.9517 23 14 -0.3568 18.7687 1.1345 24 6 1.3491 16.4612 1.2834 25 6 2.3443 15.5213 1.4792 26 6 2.1596 14.2196 1.0556 27 6 3.2929 6.0644 0.8916 28 6 1.9212 3.6048 0.0080 29 6 1.2915 2.3752 0.0013 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0208 0.3799 -0.0016 34 1 5.1345 2.5750 0.0000 35 1 4.3925 5.9734 -1.9514 36 1 2.6318 5.6710 -1.6207 37 1 1.6844 7.7303 -0.9001 38 1 1.2917 10.3531 -1.3797 39 1 0.5830 9.9311 0.1977 40 1 2.0563 11.5900 1.3043 41 1 2.7654 12.0125 -0.2727 42 1 -0.9389 14.5235 -0.2626 43 1 -1.8211 16.8101 0.9579 44 1 -0.4103 17.5453 -1.4707 45 1 0.8981 19.1999 0.4680 46 1 -1.4162 19.7897 0.9330 47 1 1.4937 17.4774 1.6192 48 1 3.2649 15.8041 1.9680 49 1 2.9350 13.4846 1.2135 50 1 2.2295 5.8763 1.0391 51 1 3.8215 6.2648 1.8236 52 1 1.3343 4.5114 0.0141 53 1 0.2129 2.3203 0.0022 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_4549614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:41 Heat of formation + Delta-G solvation = -61.767207 kcal Electronic energy + Delta-G solvation = -32925.127439 eV Core-core repulsion = 28308.912398 eV Total energy + Delta-G solvation = -4616.215042 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.65167 -41.32132 -40.83854 -39.79808 -39.11874 -37.84624 -37.38327 -34.68505 -33.24026 -32.48431 -32.03988 -31.22913 -30.70837 -28.30119 -27.11003 -26.67036 -26.19199 -24.78692 -23.70142 -23.65718 -22.44795 -21.92212 -21.47533 -20.34650 -19.36259 -19.17334 -18.18635 -17.91849 -17.58052 -17.49018 -17.12599 -17.07284 -16.84601 -16.66771 -16.29776 -16.10925 -15.96224 -15.83358 -15.56725 -15.25394 -14.90745 -14.64681 -14.55953 -14.43181 -14.36147 -14.18588 -14.13032 -13.94219 -13.44196 -13.24393 -13.23353 -13.01352 -12.92619 -12.86296 -12.76565 -12.42472 -12.33353 -12.11384 -11.99746 -11.81974 -11.63380 -11.58204 -11.55913 -11.42485 -10.98062 -10.67959 -10.07621 -9.96335 -9.94252 -9.28164 -9.02149 -4.90020 0.19013 0.38044 0.38595 0.41187 1.29899 1.50931 1.62719 1.72155 1.97116 2.37817 2.51391 2.65375 2.72979 3.40577 3.49137 3.55588 3.63672 3.70340 3.73445 3.83871 3.87721 3.89029 3.95024 3.98213 4.01163 4.09080 4.18912 4.23268 4.26488 4.28117 4.34947 4.39933 4.41401 4.49537 4.55419 4.61332 4.65005 4.67151 4.71279 4.73732 4.75962 4.76598 4.84719 4.97466 4.97981 5.05046 5.10772 5.18220 5.25446 5.33977 5.37391 5.39988 5.43225 5.55643 5.69675 5.71795 5.83092 6.32248 6.43655 6.47010 6.48073 7.16393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.169 4.169 5 C -0.082 4.082 6 C -0.110 4.110 7 C -0.062 4.062 8 H 0.105 0.895 9 C -0.125 4.125 10 C 0.119 3.881 11 H 0.098 0.902 12 N -0.704 5.704 13 C 0.521 3.479 14 O -0.584 6.584 15 C -0.134 4.134 16 C 0.074 3.926 17 O -0.325 6.325 18 C 0.117 3.883 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.086 4.086 22 O -0.548 6.548 23 Si 0.775 3.225 24 C -0.157 4.157 25 C -0.075 4.075 26 C -0.211 4.211 27 C -0.142 4.142 28 C -0.078 4.078 29 C -0.211 4.211 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.419 0.581 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.386 0.614 45 H -0.281 1.281 46 H -0.302 1.302 47 H 0.148 0.852 48 H 0.153 0.847 49 H 0.136 0.864 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.145 0.855 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -1.863 0.521 2.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.058 3.942 4 C -0.188 4.188 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.081 4.081 8 H 0.124 0.876 9 C -0.163 4.163 10 C 0.014 3.986 11 H 0.116 0.884 12 N -0.356 5.356 13 C 0.308 3.692 14 O -0.464 6.464 15 C -0.173 4.173 16 C -0.001 4.001 17 O -0.239 6.239 18 C 0.071 3.929 19 C -0.160 4.160 20 C -0.082 4.082 21 C -0.195 4.195 22 O -0.356 6.356 23 Si 0.680 3.320 24 C -0.174 4.174 25 C -0.093 4.093 26 C -0.230 4.230 27 C -0.180 4.180 28 C -0.096 4.096 29 C -0.230 4.230 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.256 0.744 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.235 0.765 45 H -0.208 1.208 46 H -0.230 1.230 47 H 0.165 0.835 48 H 0.170 0.830 49 H 0.154 0.846 50 H 0.115 0.885 51 H 0.083 0.917 52 H 0.162 0.838 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.456 -1.268 0.816 2.096 hybrid contribution -0.051 -0.603 -1.290 1.426 sum -1.507 -1.871 -0.475 2.449 Atomic orbital electron populations 1.23296 0.76622 1.05352 1.02186 1.86046 1.23333 1.27439 1.88825 1.19347 0.92871 0.84758 0.97262 1.20657 0.91746 0.99397 1.06963 1.21117 1.00804 0.90777 0.97266 1.19697 0.93600 0.94597 1.03123 1.21233 1.00056 0.89572 0.97264 0.87638 1.23420 1.03705 0.92786 0.96376 1.22488 0.91380 0.87719 0.97040 0.88357 1.45851 1.20601 1.08666 1.60452 1.20637 0.87911 0.83445 0.77202 1.90735 1.32962 1.78643 1.44099 1.21451 0.98427 0.91343 1.06105 1.22440 0.88513 0.87911 1.01272 1.85952 1.43415 1.17424 1.77088 1.19145 0.94583 0.84064 0.95061 1.20320 0.99227 0.91770 1.04681 1.20170 0.95952 0.94072 0.98015 1.25343 1.01403 1.06997 0.85720 1.86568 1.40936 1.89991 1.18132 0.93907 0.75997 0.72104 0.90024 1.21171 0.93503 1.00729 1.02019 1.21247 0.99583 0.91659 0.96841 1.21556 0.97815 0.99081 1.04520 1.23597 1.02038 0.94630 0.97745 1.21018 0.94132 0.97413 0.97025 1.21466 1.00935 0.92148 1.08446 0.91792 0.91675 0.86860 0.85223 0.83898 0.90061 0.88070 0.74371 0.85674 0.85539 0.91595 0.91814 0.85428 0.85644 0.76453 1.20790 1.23028 0.83457 0.82974 0.84596 0.88480 0.91669 0.83783 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.73 10.50 -92.39 -0.97 -2.70 16 3 C 0.10 0.45 6.69 22.51 0.15 0.60 16 4 C -0.17 -0.63 9.99 22.37 0.22 -0.40 16 5 C -0.08 -0.05 9.70 22.25 0.22 0.17 16 6 C -0.11 0.14 5.29 -19.85 -0.11 0.03 16 7 C -0.06 0.26 3.98 -11.01 -0.04 0.22 16 8 H 0.11 -0.50 8.08 -2.39 -0.02 -0.51 16 9 C -0.12 0.77 7.29 31.12 0.23 1.00 16 10 C 0.12 -0.40 4.24 45.52 0.19 -0.21 16 11 H 0.10 0.12 7.46 -2.38 -0.02 0.10 16 12 N -0.70 3.67 5.36 -440.05 -2.36 1.32 16 13 C 0.52 0.04 7.83 87.66 0.69 0.73 16 14 O -0.58 -5.41 15.58 -3.05 -0.05 -5.45 16 15 C -0.13 0.57 6.07 29.85 0.18 0.75 16 16 C 0.07 0.09 4.03 71.98 0.29 0.38 16 17 O -0.32 -1.46 10.14 -92.45 -0.94 -2.40 16 18 C 0.12 0.62 6.69 22.51 0.15 0.77 16 19 C -0.14 -0.69 9.55 22.37 0.21 -0.48 16 20 C -0.08 -0.16 5.39 -19.88 -0.11 -0.26 16 21 C -0.09 -0.04 2.82 71.24 0.20 0.16 16 22 O -0.55 -2.01 12.77 -148.98 -1.90 -3.91 16 23 Si 0.77 -1.40 29.79 68.60 2.04 0.65 16 24 C -0.16 0.03 8.67 22.28 0.19 0.23 16 25 C -0.08 -0.02 10.04 22.25 0.22 0.21 16 26 C -0.21 -0.65 9.04 22.37 0.20 -0.45 16 27 C -0.14 0.52 7.26 31.12 0.23 0.75 16 28 C -0.08 0.15 8.54 22.25 0.19 0.34 16 29 C -0.21 -0.09 9.04 22.37 0.20 0.12 16 30 H 0.06 -0.30 7.66 -2.39 -0.02 -0.32 16 31 H 0.06 -0.32 7.66 -2.39 -0.02 -0.34 16 32 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.14 -0.45 8.05 -2.91 -0.02 -0.47 16 35 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.10 -0.84 7.64 -2.38 -0.02 -0.86 16 37 H 0.42 -4.80 8.73 -92.70 -0.81 -5.61 16 38 H 0.13 -0.96 8.14 -2.38 -0.02 -0.98 16 39 H 0.13 -1.01 8.14 -2.38 -0.02 -1.03 16 40 H 0.07 0.16 7.61 -2.39 -0.02 0.14 16 41 H 0.06 0.17 7.63 -2.38 -0.02 0.15 16 42 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.13 -0.14 7.96 -2.39 -0.02 -0.15 16 44 H 0.39 -0.73 8.70 -74.06 -0.64 -1.37 16 45 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 46 H -0.30 -1.74 7.11 99.48 0.71 -1.04 16 47 H 0.15 -0.70 4.87 -2.91 -0.01 -0.71 16 48 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16 49 H 0.14 0.23 6.30 -2.91 -0.02 0.21 16 50 H 0.10 -0.52 6.38 -2.39 -0.02 -0.54 16 51 H 0.06 -0.07 8.14 -2.38 -0.02 -0.08 16 52 H 0.14 -0.99 6.71 -2.91 -0.02 -1.01 16 53 H 0.14 -0.50 6.30 -2.91 -0.02 -0.52 16 Total: 0.00 -22.67 432.92 0.19 -22.48 By element: Atomic # 1 Polarization: -15.23 SS G_CDS: -0.46 Total: -15.70 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.83 Total: 5.72 kcal Atomic # 7 Polarization: 3.67 SS G_CDS: -2.36 Total: 1.32 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -3.86 Total: -14.47 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.04 Total: 0.65 kcal Total: -22.67 0.19 -22.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_4549614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.285 kcal (2) G-P(sol) polarization free energy of solvation -22.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds