Wall clock time and date at job start Tue Mar 9 2021 13:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00407 * 2 1 4 4 C 1.38731 * 120.05737 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94400 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.05549 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94576 * 180.02562 * 6 5 4 8 8 H 1.09002 * 112.84722 * 11.19204 * 7 6 5 9 9 C 1.53781 * 113.69550 * 142.46634 * 7 6 5 10 10 C 1.53780 * 87.08357 * 139.99333 * 9 7 6 11 11 H 1.09001 * 113.69322 * 89.12631 * 10 9 7 12 12 N 1.46497 * 113.61218 * 220.02091 * 10 9 7 13 13 C 1.34776 * 119.99954 * 252.49465 * 12 10 9 14 14 O 1.21284 * 120.00030 * 0.02562 * 13 12 10 15 15 C 1.50696 * 120.00094 * 180.02562 * 13 12 10 16 16 N 1.46500 * 109.47366 * 180.02562 * 15 13 12 17 17 C 1.36832 * 125.06204 * 265.04188 * 16 15 13 18 18 C 1.34234 * 109.93820 * 179.97438 * 17 16 15 19 19 C 1.50702 * 126.50203 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47028 * 104.97679 * 19 18 17 21 21 Si 1.86301 * 109.47086 * 344.97921 * 19 18 17 22 22 C 1.46491 * 106.99956 * 359.97438 * 18 17 16 23 23 C 1.39596 * 134.03251 * 179.97438 * 22 18 17 24 24 C 1.36660 * 119.76020 * 179.97438 * 23 22 18 25 25 C 1.38795 * 120.52817 * 0.02652 * 24 23 22 26 26 C 1.37787 * 120.66610 * 359.96952 * 25 24 23 27 27 C 1.37691 * 125.06468 * 84.99256 * 16 15 13 28 28 C 1.53780 * 113.61626 * 240.00336 * 7 6 5 29 29 C 1.38264 * 120.11496 * 0.29606 * 6 5 4 30 30 C 1.38149 * 120.05351 * 359.45208 * 29 6 5 31 31 H 1.09004 * 109.46420 * 299.99713 * 1 2 3 32 32 H 1.08998 * 109.47600 * 59.99495 * 1 2 3 33 33 H 1.09001 * 109.47607 * 179.97438 * 1 2 3 34 34 H 1.08003 * 120.03034 * 0.04764 * 4 3 2 35 35 H 1.08004 * 119.96940 * 180.02562 * 5 4 3 36 36 H 1.08996 * 113.61098 * 25.44243 * 9 7 6 37 37 H 1.09000 * 113.61283 * 254.53986 * 9 7 6 38 38 H 0.96999 * 119.99857 * 72.50101 * 12 10 9 39 39 H 1.08993 * 109.47636 * 60.00013 * 15 13 12 40 40 H 1.09000 * 109.46966 * 299.99415 * 15 13 12 41 41 H 1.08001 * 125.03269 * 359.97438 * 17 16 15 42 42 H 1.08995 * 109.47272 * 224.97767 * 19 18 17 43 43 H 0.96704 * 114.00123 * 180.02562 * 20 19 18 44 44 H 1.48493 * 110.00071 * 59.99322 * 21 19 18 45 45 H 1.48493 * 110.00032 * 181.32109 * 21 19 18 46 46 H 1.07994 * 120.12133 * 359.97438 * 23 22 18 47 47 H 1.08001 * 119.73483 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.66344 * 179.70368 * 25 24 23 49 49 H 1.08001 * 120.10533 * 179.97438 * 26 25 24 50 50 H 1.09006 * 113.61605 * 105.37845 * 28 7 6 51 51 H 1.09006 * 113.69085 * 334.49240 * 28 7 6 52 52 H 1.08003 * 119.97482 * 179.70262 * 29 6 5 53 53 H 1.07993 * 120.03180 * 180.29278 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6756 0.0005 7 6 3.9862 5.0183 0.0005 8 1 5.0563 4.9481 -0.1949 9 6 3.2715 6.0761 -0.8569 10 6 3.5954 7.0848 0.2578 11 1 4.5583 7.5803 0.1339 12 7 2.5047 8.0223 0.5360 13 6 2.6102 9.3109 0.1555 14 8 3.6080 9.6942 -0.4176 15 6 1.4884 10.2755 0.4421 16 7 1.8431 11.6024 -0.0675 17 6 2.4161 12.6011 0.6718 18 6 2.6107 13.6849 -0.0958 19 6 3.2170 14.9943 0.3391 20 8 4.5495 15.0937 -0.1676 21 14 3.2528 15.0744 2.2000 22 6 2.1230 13.3533 -1.4367 23 6 2.0538 14.0506 -2.6440 24 6 1.5281 13.4427 -3.7493 25 6 1.0617 12.1373 -3.6812 26 6 1.1205 11.4307 -2.4998 27 6 1.6504 12.0301 -1.3621 28 6 3.6388 5.8868 1.2211 29 6 1.9213 3.6047 0.0067 30 6 1.2916 2.3751 0.0009 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 4.0209 0.3798 -0.0017 35 1 5.1347 2.5748 -0.0008 36 1 2.2048 5.8897 -0.9806 37 1 3.7771 6.2890 -1.7987 38 1 1.7066 7.7156 0.9941 39 1 1.3232 10.3314 1.5180 40 1 0.5781 9.9300 -0.0479 41 1 2.6737 12.5281 1.7182 42 1 2.6184 15.8185 -0.0486 43 1 5.0022 15.9133 0.0743 44 1 4.0658 13.9558 2.7410 45 1 3.8192 16.3741 2.6416 46 1 2.4144 15.0668 -2.7044 47 1 1.4752 13.9825 -4.6833 48 1 0.6445 11.6721 -4.5621 49 1 0.7546 10.4155 -2.4569 50 1 4.4408 5.9468 1.9569 51 1 2.6726 5.6496 1.6667 52 1 1.3344 4.5114 0.0120 53 1 0.2130 2.3202 0.0010 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100430_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:25 Heat of formation + Delta-G solvation = 25.411454 kcal Electronic energy + Delta-G solvation = -35218.030859 eV Core-core repulsion = 30602.400168 eV Total energy + Delta-G solvation = -4615.630691 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.177 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.52866 -41.56642 -40.80198 -39.70481 -38.10747 -37.91261 -37.63195 -34.77391 -34.09723 -32.05057 -31.59499 -31.05774 -30.27847 -29.05609 -28.22503 -26.70275 -26.13468 -25.17469 -23.84666 -23.64010 -22.84391 -22.17821 -21.63652 -20.58691 -20.38902 -19.17895 -18.53633 -18.39243 -18.26185 -17.72363 -17.49986 -17.00389 -16.66604 -16.45958 -16.40611 -16.06333 -15.95295 -15.78375 -15.60297 -15.12156 -14.92941 -14.77269 -14.70491 -14.63726 -14.40698 -14.34848 -14.14884 -14.10391 -13.53050 -13.47753 -13.41049 -13.12014 -13.02599 -12.77898 -12.72703 -12.56109 -12.52140 -12.38547 -12.13051 -12.10106 -11.71831 -11.64064 -11.58286 -11.45584 -11.07995 -10.53495 -10.34970 -10.11959 -9.96838 -9.15270 -9.02763 -8.62749 -4.91165 0.14351 0.37531 0.40625 0.64579 1.32053 1.39518 1.44542 1.61578 1.73374 1.97696 2.21874 2.38019 2.72335 2.94236 3.45552 3.55569 3.58530 3.66889 3.69951 3.75241 3.80449 3.84953 3.87987 3.94422 3.99201 4.02703 4.15375 4.15870 4.23419 4.26488 4.28484 4.35792 4.40523 4.40924 4.48692 4.57652 4.60753 4.70936 4.71336 4.71605 4.74151 4.79585 4.82499 4.90678 4.94816 5.02150 5.09124 5.14704 5.15117 5.32581 5.39205 5.51661 5.52513 5.66560 5.70258 5.73732 5.76062 5.82366 6.18264 6.24691 6.43835 6.49306 6.67517 7.15410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.169 4.169 5 C -0.083 4.083 6 C -0.110 4.110 7 C -0.063 4.063 8 H 0.100 0.900 9 C -0.140 4.140 10 C 0.120 3.880 11 H 0.088 0.912 12 N -0.699 5.699 13 C 0.489 3.511 14 O -0.577 6.577 15 C 0.087 3.913 16 N -0.466 5.466 17 C 0.073 3.927 18 C -0.182 4.182 19 C -0.058 4.058 20 O -0.565 6.565 21 Si 0.782 3.218 22 C -0.118 4.118 23 C -0.087 4.087 24 C -0.153 4.153 25 C -0.107 4.107 26 C -0.133 4.133 27 C 0.091 3.909 28 C -0.121 4.121 29 C -0.077 4.077 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.422 0.578 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.193 0.807 42 H 0.079 0.921 43 H 0.389 0.611 44 H -0.291 1.291 45 H -0.285 1.285 46 H 0.121 0.879 47 H 0.138 0.862 48 H 0.146 0.854 49 H 0.134 0.866 50 H 0.079 0.921 51 H 0.107 0.893 52 H 0.147 0.853 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 -2.246 5.170 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.058 3.942 4 C -0.188 4.188 5 C -0.101 4.101 6 C -0.110 4.110 7 C -0.082 4.082 8 H 0.118 0.882 9 C -0.179 4.179 10 C 0.014 3.986 11 H 0.106 0.894 12 N -0.352 5.352 13 C 0.275 3.725 14 O -0.455 6.455 15 C -0.037 4.037 16 N -0.149 5.149 17 C -0.052 4.052 18 C -0.190 4.190 19 C -0.166 4.166 20 O -0.375 6.375 21 Si 0.685 3.315 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.172 4.172 25 C -0.126 4.126 26 C -0.154 4.154 27 C -0.014 4.014 28 C -0.159 4.159 29 C -0.094 4.094 30 C -0.229 4.229 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.260 0.740 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.209 0.791 42 H 0.097 0.903 43 H 0.239 0.761 44 H -0.219 1.219 45 H -0.212 1.212 46 H 0.139 0.861 47 H 0.156 0.844 48 H 0.164 0.836 49 H 0.152 0.848 50 H 0.098 0.902 51 H 0.125 0.875 52 H 0.165 0.835 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.596 -2.968 5.374 9.767 hybrid contribution 1.005 0.358 -0.783 1.323 sum -6.591 -2.610 4.591 8.446 Atomic orbital electron populations 1.23302 0.76572 1.05371 1.02230 1.86047 1.23381 1.27438 1.88804 1.19338 0.92806 0.84823 0.97188 1.20641 0.91833 0.99295 1.07006 1.21099 1.00717 0.90894 0.97402 1.19670 0.93719 0.94394 1.03260 1.21208 0.99812 0.89748 0.97414 0.88157 1.23594 1.02092 0.94630 0.97580 1.22419 0.91234 0.87825 0.97088 0.89358 1.45790 1.21634 1.07937 1.59834 1.21568 0.88750 0.83970 0.78196 1.90815 1.33614 1.78384 1.42736 1.22034 0.96981 0.79068 1.05649 1.43401 1.52863 1.11460 1.07133 1.21911 0.98306 0.86714 0.98289 1.19762 1.09494 0.96826 0.92878 1.24480 0.83811 0.95993 1.12285 1.86628 1.27853 1.45701 1.77304 0.94254 0.88636 0.76981 0.71593 1.19367 1.03831 0.94429 0.94586 1.20446 0.98855 0.99846 0.91427 1.20927 1.01416 0.96065 0.98813 1.21144 0.99497 0.94502 0.97492 1.20250 1.03891 1.00562 0.90652 1.18415 1.02529 0.94188 0.86293 1.23407 1.03962 0.92384 0.96133 1.21026 0.93959 0.97517 0.96922 1.21476 1.00996 0.92060 1.08322 0.91563 0.91777 0.86889 0.85327 0.84180 0.87976 0.92322 0.73980 0.81731 0.83376 0.79056 0.90258 0.76116 1.21853 1.21207 0.86119 0.84402 0.83582 0.84812 0.90239 0.87482 0.83498 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.34 -1.58 10.50 -92.37 -0.97 -2.55 16 3 C 0.10 0.41 6.69 22.51 0.15 0.56 16 4 C -0.17 -0.62 9.99 22.37 0.22 -0.40 16 5 C -0.08 -0.07 9.70 22.25 0.22 0.15 16 6 C -0.11 0.14 5.29 -19.85 -0.11 0.04 16 7 C -0.06 0.24 3.97 -11.01 -0.04 0.19 16 8 H 0.10 -0.33 8.09 -2.39 -0.02 -0.35 16 9 C -0.14 0.45 7.25 31.12 0.23 0.67 16 10 C 0.12 -0.34 4.24 45.52 0.19 -0.15 16 11 H 0.09 0.32 7.46 -2.39 -0.02 0.30 16 12 N -0.70 4.41 5.35 -440.04 -2.36 2.05 16 13 C 0.49 0.25 7.90 87.66 0.69 0.94 16 14 O -0.58 -7.87 16.02 -3.04 -0.05 -7.92 16 15 C 0.09 -0.54 6.48 85.63 0.55 0.02 16 16 N -0.47 -1.68 2.27 -520.02 -1.18 -2.86 16 17 C 0.07 0.33 9.89 83.00 0.82 1.15 16 18 C -0.18 -1.56 5.61 -18.63 -0.10 -1.66 16 19 C -0.06 -0.27 3.05 71.24 0.22 -0.06 16 20 O -0.57 -4.99 12.86 -148.98 -1.92 -6.90 16 21 Si 0.78 -0.46 30.79 68.60 2.11 1.65 16 22 C -0.12 -1.36 6.35 -20.20 -0.13 -1.49 16 23 C -0.09 -0.88 10.05 22.23 0.22 -0.66 16 24 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 25 C -0.11 -0.57 10.01 22.30 0.22 -0.35 16 26 C -0.13 -0.80 10.00 22.37 0.22 -0.58 16 27 C 0.09 0.79 6.80 39.03 0.27 1.06 16 28 C -0.12 0.78 7.29 31.12 0.23 1.00 16 29 C -0.08 0.21 8.59 22.25 0.19 0.40 16 30 C -0.21 0.08 9.04 22.37 0.20 0.29 16 31 H 0.07 -0.38 7.66 -2.38 -0.02 -0.40 16 32 H 0.06 -0.34 7.66 -2.39 -0.02 -0.36 16 33 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 35 H 0.14 -0.34 8.05 -2.91 -0.02 -0.36 16 36 H 0.10 -0.61 6.33 -2.39 -0.02 -0.62 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.42 -6.07 8.73 -92.71 -0.81 -6.88 16 39 H 0.17 -2.41 8.12 -2.39 -0.02 -2.43 16 40 H 0.15 -1.80 8.14 -2.39 -0.02 -1.82 16 41 H 0.19 -0.34 6.30 -2.91 -0.02 -0.36 16 42 H 0.08 0.15 7.96 -2.39 -0.02 0.13 16 43 H 0.39 -0.10 8.74 -74.05 -0.65 -0.74 16 44 H -0.29 -1.52 7.04 99.48 0.70 -0.82 16 45 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 46 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 47 H 0.14 0.34 8.06 -2.91 -0.02 0.31 16 48 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 49 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 50 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 51 H 0.11 -1.04 7.69 -2.38 -0.02 -1.06 16 52 H 0.15 -1.21 6.68 -2.91 -0.02 -1.23 16 53 H 0.14 -0.67 6.30 -2.91 -0.02 -0.69 16 Total: 0.00 -33.62 438.56 0.97 -32.64 By element: Atomic # 1 Polarization: -16.97 SS G_CDS: -0.47 Total: -17.44 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.80 Total: 1.32 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -3.54 Total: -0.81 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -2.93 Total: -17.37 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.11 Total: 1.65 kcal Total: -33.62 0.97 -32.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100430_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.055 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds