Wall clock time and date at job start Tue Mar 9 2021 13:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37647 * 125.67896 * 2 1 4 4 C 1.46682 * 126.23264 * 359.96621 * 3 2 1 5 5 O 1.21696 * 120.00071 * 4.28449 * 4 3 2 6 6 N 1.34779 * 119.99941 * 184.29385 * 4 3 2 7 7 C 1.46504 * 119.99925 * 174.61038 * 6 4 3 8 8 H 1.09000 * 109.47249 * 325.00258 * 7 6 4 9 9 C 1.53008 * 109.46836 * 84.99920 * 7 6 4 10 10 C 1.53001 * 109.46906 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46867 * 300.00119 * 10 9 7 12 12 H 1.09000 * 109.47065 * 299.99646 * 11 10 9 13 13 O 1.42899 * 109.46837 * 180.02562 * 11 10 9 14 14 C 1.42902 * 114.00052 * 149.99692 * 13 11 10 15 15 F 1.39895 * 109.47193 * 299.99677 * 14 13 11 16 16 F 1.39904 * 109.47038 * 60.00202 * 14 13 11 17 17 C 1.52995 * 109.47544 * 59.99984 * 11 10 9 18 18 C 1.52997 * 109.46956 * 204.99469 * 7 6 4 19 19 C 1.37866 * 107.53588 * 179.70003 * 3 2 1 20 20 C 1.39832 * 107.08592 * 0.26216 * 19 3 2 21 21 C 1.35451 * 107.86230 * 359.97438 * 20 19 3 22 22 C 1.50705 * 125.56582 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47281 * 209.97820 * 22 21 20 24 24 Si 1.86301 * 109.47068 * 329.97421 * 22 21 20 25 25 H 1.08999 * 109.46835 * 91.26220 * 1 2 3 26 26 H 1.08997 * 109.47123 * 211.26651 * 1 2 3 27 27 H 1.09003 * 109.46692 * 331.26641 * 1 2 3 28 28 H 0.96999 * 120.00229 * 354.61143 * 6 4 3 29 29 H 1.09000 * 109.46744 * 299.99884 * 9 7 6 30 30 H 1.09000 * 109.46892 * 59.99583 * 9 7 6 31 31 H 1.09000 * 109.46989 * 59.99812 * 10 9 7 32 32 H 1.08997 * 109.46977 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47107 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.47263 * 180.02562 * 17 11 10 35 35 H 1.09000 * 109.47216 * 59.99754 * 17 11 10 36 36 H 1.09000 * 109.47493 * 299.99997 * 18 7 6 37 37 H 1.08997 * 109.46998 * 60.00440 * 18 7 6 38 38 H 1.08007 * 126.46127 * 180.22606 * 19 3 2 39 39 H 1.08000 * 126.07086 * 179.97438 * 20 19 3 40 40 H 1.08998 * 109.47095 * 89.97453 * 22 21 20 41 41 H 0.96695 * 114.00635 * 59.99581 * 23 22 21 42 42 H 1.48506 * 109.99941 * 58.67790 * 24 22 21 43 43 H 1.48492 * 110.00323 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8124 2.5124 -0.0007 5 8 0.6245 2.7646 0.0774 6 7 2.7097 3.5144 -0.0880 7 6 2.2505 4.9004 -0.2077 8 1 1.3369 4.9306 -0.8014 9 6 1.9722 5.4676 1.1858 10 6 1.4921 6.9150 1.0607 11 6 2.5729 7.7533 0.3753 12 1 3.4867 7.7237 0.9689 13 8 2.1248 9.1052 0.2591 14 6 3.1775 10.0712 0.2889 15 9 3.8702 9.9687 1.4999 16 9 4.0571 9.8351 -0.7731 17 6 2.8513 7.1862 -1.0181 18 6 3.3319 5.7385 -0.8928 19 6 3.5780 0.6888 0.0069 20 6 3.5522 -0.7093 0.0049 21 6 2.2555 -1.1009 -0.0024 22 6 1.7709 -2.5279 -0.0062 23 8 0.5163 -2.6030 -0.6862 24 14 3.0158 -3.6042 -0.8794 25 1 -0.3633 -0.0226 -1.0274 26 1 -0.3633 -0.8784 0.5334 27 1 -0.3633 0.9012 0.4941 28 1 3.6594 3.3178 -0.0716 29 1 1.2018 4.8705 1.6738 30 1 2.8858 5.4374 1.7795 31 1 0.5784 6.9446 0.4671 32 1 1.2934 7.3189 2.0534 33 1 2.7553 11.0717 0.1949 34 1 3.6217 7.7832 -1.5062 35 1 1.9376 7.2159 -1.6117 36 1 4.2455 5.7084 -0.2990 37 1 3.5302 5.3344 -1.8855 38 1 4.4584 1.3144 0.0121 39 1 4.4133 -1.3611 0.0086 40 1 1.6490 -2.8729 1.0205 41 1 0.5499 -2.3107 -1.6073 42 1 4.3334 -3.5100 -0.2007 43 1 2.5494 -5.0139 -0.8906 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:42 Heat of formation + Delta-G solvation = -179.579989 kcal Electronic energy + Delta-G solvation = -28906.447969 eV Core-core repulsion = 24396.140833 eV Total energy + Delta-G solvation = -4510.307136 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.06180 -48.17403 -42.62162 -40.93662 -39.70031 -37.81607 -37.61852 -35.06004 -33.72926 -31.95094 -31.67305 -29.85991 -27.49696 -26.93715 -26.10392 -23.98762 -23.64794 -22.72316 -21.45581 -21.32046 -20.38177 -19.36906 -18.94975 -18.72840 -18.62485 -18.10658 -17.39397 -16.94434 -16.62790 -16.06512 -16.00394 -15.67364 -15.43438 -15.31863 -15.11407 -14.97559 -14.80333 -14.63679 -14.51097 -14.42745 -14.35617 -14.15343 -13.81526 -13.71548 -13.41791 -13.29155 -13.26369 -13.03308 -12.63883 -12.44224 -12.22885 -12.21524 -12.19590 -12.02359 -11.47915 -11.15386 -11.07579 -10.69653 -10.20635 -9.77416 -9.12295 -4.91140 0.35470 1.17164 1.51599 1.69959 1.75426 1.98395 2.04421 2.30913 2.34265 2.73546 3.32357 3.46487 3.53286 3.56007 3.68017 3.73701 3.85591 3.92971 3.96065 3.99278 4.06427 4.13881 4.27491 4.29648 4.33972 4.37526 4.42310 4.50093 4.52475 4.67040 4.72289 4.80815 4.97732 5.02995 5.03807 5.05170 5.11088 5.16263 5.20157 5.41312 5.60388 5.71068 5.96584 6.11412 6.46701 6.58634 7.11699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.402 5.402 3 C -0.079 4.079 4 C 0.588 3.412 5 O -0.583 6.583 6 N -0.701 5.701 7 C 0.150 3.850 8 H 0.073 0.927 9 C -0.121 4.121 10 C -0.107 4.107 11 C 0.075 3.925 12 H 0.076 0.924 13 O -0.391 6.391 14 C 0.398 3.602 15 F -0.220 7.220 16 F -0.216 7.216 17 C -0.137 4.137 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.214 4.214 21 C 0.014 3.986 22 C -0.058 4.058 23 O -0.555 6.555 24 Si 0.811 3.189 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.417 0.583 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.206 0.794 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.112 0.888 41 H 0.394 0.606 42 H -0.274 1.274 43 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 0.602 -3.183 5.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.075 5.075 3 C -0.193 4.193 4 C 0.377 3.623 5 O -0.465 6.465 6 N -0.352 5.352 7 C 0.046 3.954 8 H 0.091 0.909 9 C -0.159 4.159 10 C -0.145 4.145 11 C 0.019 3.981 12 H 0.094 0.906 13 O -0.312 6.312 14 C 0.308 3.692 15 F -0.202 7.202 16 F -0.198 7.198 17 C -0.175 4.175 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.238 4.238 21 C -0.104 4.104 22 C -0.167 4.167 23 O -0.362 6.362 24 Si 0.713 3.287 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.254 0.746 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.222 0.778 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.191 0.809 39 H 0.179 0.821 40 H 0.130 0.870 41 H 0.244 0.756 42 H -0.200 1.200 43 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 3.000 -0.019 -2.524 3.921 hybrid contribution 0.148 0.156 0.858 0.884 sum 3.148 0.137 -1.666 3.565 Atomic orbital electron populations 1.22291 0.75570 1.04625 1.04504 1.43903 1.07201 1.04430 1.51974 1.20168 0.91336 0.87282 1.20476 1.17193 0.85353 0.84254 0.75507 1.90780 1.17859 1.85357 1.52483 1.45567 1.10217 1.05423 1.74041 1.21012 0.98495 0.79504 0.96387 0.90926 1.21818 1.02181 0.94663 0.97267 1.21476 0.98016 0.93648 1.01395 1.22439 0.98396 0.79900 0.97363 0.90573 1.88442 1.32845 1.17275 1.92680 1.23828 0.77508 0.97159 0.70753 1.93042 1.81935 1.97082 1.48181 1.93040 1.72539 1.95851 1.58396 1.22075 1.02971 0.96187 0.96260 1.21716 0.97877 0.93350 1.02321 1.21657 0.94505 0.95496 1.03372 1.20911 0.95332 0.95813 1.11732 1.21426 0.91175 0.89452 1.08332 1.25202 0.94901 0.94160 1.02453 1.86462 1.30234 1.89104 1.30413 0.92949 0.73525 0.74071 0.88147 0.89623 0.88641 0.90102 0.74565 0.92357 0.90249 0.91135 0.90634 0.77832 0.89991 0.90867 0.89413 0.89315 0.80922 0.82119 0.87025 0.75573 1.19954 1.22287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 9.40 127.77 1.20 1.43 16 2 N -0.40 -1.66 3.16 -519.70 -1.64 -3.31 16 3 C -0.08 -0.33 6.89 40.35 0.28 -0.05 16 4 C 0.59 3.38 7.73 86.45 0.67 4.05 16 5 O -0.58 -7.44 14.28 -4.34 -0.06 -7.50 16 6 N -0.70 0.80 5.06 -446.47 -2.26 -1.46 16 7 C 0.15 -0.13 2.41 44.99 0.11 -0.02 16 8 H 0.07 0.27 7.66 -2.39 -0.02 0.25 16 9 C -0.12 -0.01 5.49 30.60 0.17 0.16 16 10 C -0.11 -0.02 5.57 30.59 0.17 0.15 16 11 C 0.08 -0.04 2.40 30.59 0.07 0.04 16 12 H 0.08 -0.05 7.20 -2.39 -0.02 -0.07 16 13 O -0.39 -0.33 10.29 -148.98 -1.53 -1.86 16 14 C 0.40 -0.98 6.26 113.37 0.71 -0.27 16 15 F -0.22 -0.34 16.63 44.97 0.75 0.40 16 16 F -0.22 -0.09 15.46 44.97 0.70 0.61 16 17 C -0.14 0.31 5.40 30.61 0.17 0.48 16 18 C -0.11 0.58 5.39 30.61 0.17 0.74 16 19 C -0.12 0.08 10.35 22.57 0.23 0.31 16 20 C -0.21 0.07 9.37 22.01 0.21 0.27 16 21 C 0.01 0.02 6.14 41.34 0.25 0.27 16 22 C -0.06 0.09 2.88 71.24 0.21 0.30 16 23 O -0.55 0.90 10.43 -148.98 -1.55 -0.65 16 24 Si 0.81 -3.49 31.29 68.60 2.15 -1.34 16 25 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.10 0.22 6.90 -2.39 -0.02 0.20 16 27 H 0.08 0.62 6.16 -2.39 -0.01 0.60 16 28 H 0.42 -2.90 7.50 -92.71 -0.70 -3.59 16 29 H 0.06 0.28 8.08 -2.39 -0.02 0.26 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.21 -2.18 8.14 -2.39 -0.02 -2.20 16 34 H 0.08 -0.15 6.50 -2.38 -0.02 -0.16 16 35 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.17 -1.26 7.45 -2.91 -0.02 -1.28 16 39 H 0.16 -0.56 6.62 -2.91 -0.02 -0.58 16 40 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 41 H 0.39 -3.33 8.70 -74.06 -0.64 -3.98 16 42 H -0.27 0.20 6.76 99.48 0.67 0.87 16 43 H -0.30 -0.81 7.11 99.48 0.71 -0.11 16 Total: 0.00 -19.33 352.05 0.87 -18.47 By element: Atomic # 1 Polarization: -10.95 SS G_CDS: -0.28 Total: -11.23 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.61 Total: 7.87 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -3.90 Total: -4.77 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -3.15 Total: -10.01 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 1.44 Total: 1.01 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.15 Total: -1.34 kcal Total: -19.33 0.87 -18.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.114 kcal (2) G-P(sol) polarization free energy of solvation -19.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds