Wall clock time and date at job start Tue Mar 9 2021 13:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35657 * 117.00047 * 2 1 4 4 C 1.38409 * 120.11968 * 359.97438 * 3 2 1 5 5 C 1.38726 * 120.03402 * 180.02562 * 4 3 2 6 6 O 1.35714 * 119.85989 * 179.97438 * 5 4 3 7 7 C 1.42899 * 117.00448 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27377 * 359.97438 * 5 4 3 9 9 C 1.50698 * 119.87859 * 180.02562 * 8 5 4 10 10 O 1.42898 * 109.47193 * 74.99759 * 9 8 5 11 11 Si 1.86297 * 109.46866 * 195.00055 * 9 8 5 12 12 C 1.37586 * 120.23680 * 359.74059 * 8 5 4 13 13 C 1.39818 * 119.96585 * 0.51361 * 12 8 5 14 14 C 1.47300 * 120.13179 * 179.76238 * 13 12 8 15 15 O 1.21623 * 119.99780 * 179.72360 * 14 13 12 16 16 N 1.34777 * 120.00251 * 359.72818 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27604 * 16 14 13 18 18 H 1.09004 * 109.47372 * 34.71852 * 17 16 14 19 19 C 1.52999 * 109.46963 * 154.72290 * 17 16 14 20 20 C 1.53003 * 109.47087 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47241 * 300.00042 * 20 19 17 22 22 H 1.08995 * 109.47096 * 299.99819 * 21 20 19 23 23 O 1.42898 * 109.47199 * 179.97438 * 21 20 19 24 24 C 1.42899 * 114.00015 * 149.99795 * 23 21 20 25 25 F 1.39893 * 109.47524 * 300.00208 * 24 23 21 26 26 F 1.39906 * 109.47154 * 60.00173 * 24 23 21 27 27 C 1.52999 * 109.47114 * 59.99975 * 21 20 19 28 28 C 1.52997 * 109.47036 * 274.72131 * 17 16 14 29 29 H 1.08995 * 109.47540 * 299.99901 * 1 2 3 30 30 H 1.08998 * 109.47565 * 60.00273 * 1 2 3 31 31 H 1.09007 * 109.46705 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.97930 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.46931 * 59.99814 * 7 6 5 34 34 H 1.08997 * 109.47057 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.46739 * 300.00198 * 7 6 5 36 36 H 1.09003 * 109.46905 * 314.99380 * 9 8 5 37 37 H 0.96705 * 113.99833 * 180.02562 * 10 9 8 38 38 H 1.48499 * 109.99841 * 178.67886 * 11 9 8 39 39 H 1.48499 * 110.00014 * 299.99578 * 11 9 8 40 40 H 1.07999 * 120.01242 * 180.25483 * 12 8 5 41 41 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 42 42 H 1.08997 * 109.46923 * 299.99333 * 19 17 16 43 43 H 1.08995 * 109.47266 * 59.99845 * 19 17 16 44 44 H 1.09004 * 109.47044 * 59.99688 * 20 19 17 45 45 H 1.08997 * 109.47066 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.47165 * 179.97438 * 24 23 21 47 47 H 1.08995 * 109.47266 * 59.99948 * 27 21 20 48 48 H 1.09000 * 109.47204 * 180.02562 * 27 21 20 49 49 H 1.09009 * 109.47238 * 300.00198 * 28 17 16 50 50 H 1.08997 * 109.47293 * 60.00168 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2934 2.3711 -0.0005 5 6 1.9251 3.6062 -0.0011 6 8 1.1849 4.7437 -0.0021 7 6 -0.2362 4.5931 -0.0032 8 6 3.3144 3.6836 -0.0005 9 6 3.9913 5.0300 -0.0005 10 8 3.8931 5.6125 1.3006 11 14 5.7862 4.8225 -0.4544 12 6 4.0723 2.5353 0.0059 13 6 3.4460 1.2852 0.0011 14 6 4.2539 0.0535 0.0027 15 8 3.7066 -1.0327 0.0036 16 7 5.5995 0.1300 0.0033 17 6 6.4028 -1.0950 -0.0013 18 1 5.8959 -1.8599 -0.5896 19 6 7.7734 -0.8038 -0.6158 20 6 8.6127 -2.0831 -0.6200 21 6 8.7927 -2.5796 0.8159 22 1 9.2995 -1.8146 1.4040 23 8 9.5761 -3.7748 0.8120 24 6 10.3608 -3.9593 1.9919 25 9 11.2462 -2.8858 2.1358 26 9 9.5184 -4.0216 3.1072 27 6 7.4222 -2.8708 1.4305 28 6 6.5829 -1.5921 1.4344 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2148 2.3164 -0.0005 33 1 -0.5440 4.0441 0.8868 34 1 -0.7058 5.5767 -0.0044 35 1 -0.5426 4.0434 -0.8932 36 1 3.5056 5.6808 -0.7276 37 1 4.3082 6.4828 1.3742 38 1 6.4576 6.1466 -0.4891 39 1 6.4598 3.9372 0.5293 40 1 5.1503 2.5996 0.0105 41 1 6.0359 0.9963 0.0022 42 1 7.6451 -0.4498 -1.6387 43 1 8.2803 -0.0390 -0.0275 44 1 8.1059 -2.8482 -1.2081 45 1 9.5889 -1.8757 -1.0582 46 1 10.9254 -4.8882 1.9112 47 1 6.9154 -3.6359 0.8423 48 1 7.5504 -3.2242 2.4536 49 1 7.0899 -0.8272 2.0229 50 1 5.6066 -1.7995 1.8723 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:52 Heat of formation + Delta-G solvation = -266.384129 kcal Electronic energy + Delta-G solvation = -37524.572658 eV Core-core repulsion = 32154.799179 eV Total energy + Delta-G solvation = -5369.773479 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.06897 -48.18398 -42.11071 -40.96986 -40.13789 -39.61465 -38.41657 -37.65207 -37.14308 -34.80588 -32.39117 -31.97781 -31.91679 -29.80877 -28.97888 -28.11320 -26.39424 -26.05845 -24.74775 -23.88841 -23.37201 -22.43257 -21.52327 -21.10640 -20.01447 -19.37284 -18.86207 -18.64327 -18.54594 -18.53686 -18.19706 -17.41900 -17.09320 -16.88977 -16.54316 -16.48836 -16.25593 -15.95391 -15.77689 -15.64319 -15.48747 -15.39478 -15.06740 -14.98871 -14.60837 -14.42490 -14.38725 -14.22566 -14.12959 -13.88067 -13.73888 -13.65688 -13.46630 -13.40657 -13.22866 -12.80821 -12.78067 -12.54367 -12.51648 -12.40728 -12.21590 -12.14077 -11.96096 -11.88701 -11.63602 -11.50973 -11.08827 -10.90826 -10.41004 -10.12817 -9.92354 -9.19748 -4.91657 -0.26213 0.06931 1.30112 1.59922 1.72129 1.93341 1.95491 2.11022 2.13688 2.18382 2.58200 2.73701 3.33176 3.48390 3.54052 3.54750 3.67563 3.70733 3.73971 3.83764 3.86775 3.97037 4.00897 4.07263 4.09619 4.16925 4.18882 4.23298 4.27327 4.28053 4.30056 4.31774 4.39379 4.44974 4.55263 4.63922 4.66919 4.71100 4.76425 4.84247 4.90998 4.99330 5.04068 5.06694 5.09089 5.18495 5.23993 5.28944 5.49259 5.61781 6.02423 6.27925 6.52193 6.64490 7.24122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.311 4.311 5 C 0.214 3.786 6 O -0.312 6.312 7 C 0.012 3.988 8 C -0.163 4.163 9 C -0.075 4.075 10 O -0.556 6.556 11 Si 0.758 3.242 12 C 0.000 4.000 13 C -0.228 4.228 14 C 0.565 3.435 15 O -0.561 6.561 16 N -0.717 5.717 17 C 0.146 3.854 18 H 0.075 0.925 19 C -0.117 4.117 20 C -0.106 4.106 21 C 0.075 3.925 22 H 0.075 0.925 23 O -0.387 6.387 24 C 0.397 3.603 25 F -0.219 7.219 26 F -0.220 7.220 27 C -0.136 4.136 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.392 0.608 38 H -0.283 1.283 39 H -0.271 1.271 40 H 0.159 0.841 41 H 0.409 0.591 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.207 0.793 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 4.168 -4.235 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.330 4.330 5 C 0.166 3.834 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.183 4.183 10 O -0.366 6.366 11 Si 0.661 3.339 12 C -0.018 4.018 13 C -0.232 4.232 14 C 0.354 3.646 15 O -0.440 6.440 16 N -0.369 5.369 17 C 0.042 3.958 18 H 0.093 0.907 19 C -0.155 4.155 20 C -0.144 4.144 21 C 0.019 3.981 22 H 0.093 0.907 23 O -0.309 6.309 24 C 0.306 3.694 25 F -0.201 7.201 26 F -0.203 7.203 27 C -0.174 4.174 28 C -0.161 4.161 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.182 0.818 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.242 0.758 38 H -0.210 1.210 39 H -0.198 1.198 40 H 0.176 0.824 41 H 0.247 0.753 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.223 0.777 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.164 2.861 -3.997 4.918 hybrid contribution -0.922 1.395 1.492 2.241 sum -0.759 4.256 -2.505 4.997 Atomic orbital electron populations 1.23476 0.76520 1.05764 1.02665 1.86363 1.23212 1.25808 1.86032 1.18966 0.91042 0.84757 0.88408 1.21414 1.02041 0.90674 1.18860 1.18909 0.90845 0.85040 0.88618 1.86110 1.21082 1.28586 1.86526 1.23477 0.76219 1.05942 1.02592 1.18605 0.90417 0.94970 1.12381 1.24873 1.12569 0.93043 0.87812 1.86570 1.80863 1.38627 1.30544 0.94371 0.71320 0.80705 0.87475 1.20957 1.00163 0.89081 0.91587 1.19132 0.90909 0.93735 1.19409 1.18024 0.82537 0.88316 0.75728 1.90816 1.72302 1.30122 1.50781 1.45851 1.05133 1.10343 1.75589 1.21015 0.92006 0.86688 0.96079 0.90691 1.21772 0.92484 0.97928 1.03317 1.21505 1.01821 0.97454 0.93642 1.22462 0.90572 0.85642 0.99464 0.90670 1.88435 1.59326 1.44645 1.38506 1.23864 0.80067 0.90751 0.74707 1.93039 1.69545 1.61987 1.95537 1.93042 1.73818 1.96889 1.56511 1.22037 0.95357 0.98212 1.01808 1.21802 0.99637 0.97310 0.97338 0.91295 0.90730 0.86880 0.81780 0.91748 0.86071 0.90846 0.89843 0.75793 1.20965 1.19789 0.82388 0.75340 0.88258 0.89432 0.90630 0.89101 0.77691 0.91243 0.91324 0.90802 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.87 8.56 -68.77 -0.59 -3.46 16 3 C 0.22 1.66 6.70 22.82 0.15 1.81 16 4 C -0.31 -0.95 8.01 22.43 0.18 -0.77 16 5 C 0.21 0.86 6.67 22.60 0.15 1.01 16 6 O -0.31 -0.81 9.80 -90.36 -0.89 -1.70 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.53 5.30 -19.80 -0.10 -0.63 16 9 C -0.08 -0.01 2.36 71.24 0.17 0.16 16 10 O -0.56 -1.67 12.86 -148.98 -1.92 -3.58 16 11 Si 0.76 -3.20 30.20 68.60 2.07 -1.13 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.60 5.89 -20.00 -0.12 -1.72 16 14 C 0.56 5.31 7.72 86.63 0.67 5.97 16 15 O -0.56 -9.81 14.81 16.86 0.25 -9.56 16 16 N -0.72 -1.46 5.03 -445.92 -2.24 -3.70 16 17 C 0.15 0.24 2.46 44.99 0.11 0.35 16 18 H 0.07 0.46 7.57 -2.39 -0.02 0.44 16 19 C -0.12 0.53 5.39 30.59 0.16 0.70 16 20 C -0.11 0.27 5.57 30.59 0.17 0.45 16 21 C 0.08 0.06 2.40 30.59 0.07 0.14 16 22 H 0.08 0.05 7.20 -2.39 -0.02 0.04 16 23 O -0.39 -0.69 10.29 -148.98 -1.53 -2.22 16 24 C 0.40 -0.35 6.26 113.37 0.71 0.36 16 25 F -0.22 -0.54 16.63 44.97 0.75 0.21 16 26 F -0.22 -0.79 15.46 44.97 0.70 -0.10 16 27 C -0.14 -0.44 5.39 30.58 0.16 -0.27 16 28 C -0.12 -0.43 5.49 30.58 0.17 -0.26 16 29 H 0.07 -0.22 7.66 -2.39 -0.02 -0.24 16 30 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 31 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.16 -0.39 4.50 -2.91 -0.01 -0.40 16 33 H 0.06 -0.38 7.65 -2.39 -0.02 -0.39 16 34 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.07 -0.56 7.65 -2.38 -0.02 -0.57 16 36 H 0.08 -0.15 7.82 -2.39 -0.02 -0.16 16 37 H 0.39 -1.96 8.74 -74.05 -0.65 -2.61 16 38 H -0.28 -0.04 7.11 99.48 0.71 0.66 16 39 H -0.27 0.28 6.74 99.48 0.67 0.95 16 40 H 0.16 -0.50 3.20 -2.91 -0.01 -0.51 16 41 H 0.41 -1.56 6.62 -92.71 -0.61 -2.18 16 42 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.09 -0.62 8.14 -2.39 -0.02 -0.63 16 44 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.21 -1.95 8.14 -2.39 -0.02 -1.97 16 47 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.07 0.34 6.50 -2.39 -0.02 0.33 16 49 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 50 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 Total: 0.00 -26.33 405.02 1.42 -24.91 By element: Atomic # 1 Polarization: -9.05 SS G_CDS: -0.24 Total: -9.29 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.07 Total: 9.63 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -2.24 Total: -3.70 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -4.67 Total: -20.53 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 1.44 Total: 0.11 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: 2.07 Total: -1.13 kcal Total: -26.33 1.42 -24.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.474 kcal (2) G-P(sol) polarization free energy of solvation -26.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds