Wall clock time and date at job start Tue Mar 9 2021 13:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86303 * 109.46934 * 2 1 4 4 C 1.50703 * 109.46811 * 119.99674 * 2 1 3 5 5 C 1.34832 * 125.65080 * 65.27742 * 4 2 1 6 6 C 1.40795 * 107.04964 * 180.14040 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.60553 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39922 * 119.95362 * 359.97438 * 8 7 6 10 10 C 1.36426 * 120.27880 * 180.02562 * 9 8 7 11 11 C 1.39874 * 120.18611 * 359.96090 * 10 9 8 12 12 C 1.47294 * 120.04820 * 180.02562 * 11 10 9 13 13 O 1.21621 * 120.00136 * 180.02562 * 12 11 10 14 14 N 1.34769 * 119.99602 * 359.97438 * 12 11 10 15 15 C 1.46500 * 119.99746 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47600 * 34.99949 * 15 14 12 17 17 C 1.53004 * 109.47178 * 154.99931 * 15 14 12 18 18 C 1.53007 * 109.46940 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47277 * 300.00005 * 18 17 15 20 20 H 1.09013 * 109.47260 * 300.00277 * 19 18 17 21 21 O 1.42901 * 109.47465 * 180.02562 * 19 18 17 22 22 C 1.42896 * 114.00236 * 149.99935 * 21 19 18 23 23 F 1.39902 * 109.46976 * 300.00179 * 22 21 19 24 24 F 1.39902 * 109.47265 * 60.00257 * 22 21 19 25 25 C 1.52995 * 109.47267 * 60.00033 * 19 18 17 26 26 C 1.53001 * 109.47526 * 300.00022 * 25 19 18 27 27 C 1.40409 * 119.90491 * 0.02562 * 11 10 9 28 28 O 1.35686 * 120.13425 * 180.02562 * 27 11 10 29 29 C 1.38275 * 119.72628 * 359.77326 * 27 11 10 30 30 O 1.34226 * 125.65142 * 244.97710 * 4 2 1 31 31 H 0.96702 * 113.99524 * 59.99666 * 1 2 3 32 32 H 1.08995 * 109.47466 * 240.00217 * 2 1 3 33 33 H 1.48507 * 109.99797 * 59.99949 * 3 2 1 34 34 H 1.48500 * 109.99719 * 181.31616 * 3 2 1 35 35 H 1.08005 * 126.47479 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.87482 * 6 5 4 37 37 H 1.07995 * 119.86063 * 359.97438 * 9 8 7 38 38 H 1.07994 * 119.90799 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00707 * 0.02562 * 14 12 11 40 40 H 1.08995 * 109.47491 * 299.99738 * 17 15 14 41 41 H 1.09002 * 109.47375 * 60.00098 * 17 15 14 42 42 H 1.08996 * 109.47160 * 60.00259 * 18 17 15 43 43 H 1.09003 * 109.46794 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.47399 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.47243 * 59.99837 * 25 19 18 46 46 H 1.09004 * 109.47662 * 180.02562 * 25 19 18 47 47 H 1.09007 * 109.47139 * 300.00232 * 26 25 19 48 48 H 1.08991 * 109.47980 * 179.97438 * 26 25 19 49 49 H 0.96697 * 113.99713 * 90.00169 * 28 27 11 50 50 H 1.08001 * 120.09354 * 180.23118 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.7612 -2.0190 1.5069 6 6 2.3802 -2.2627 2.7478 7 6 2.9079 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4129 9 6 3.8783 -1.9175 5.2953 10 6 4.5702 -1.7177 6.4540 11 6 5.0648 -0.4475 6.7676 12 6 5.8119 -0.2353 8.0191 13 8 6.2412 0.8697 8.2912 14 7 6.0188 -1.2653 8.8633 15 6 6.7613 -1.0541 10.1084 16 1 6.5391 -0.0615 10.5001 17 6 6.3482 -2.1114 11.1342 18 6 7.1242 -1.8912 12.4344 19 6 8.6246 -2.0070 12.1586 20 1 8.8465 -2.9998 11.7667 21 8 9.3494 -1.8020 13.3730 22 6 10.5908 -2.5069 13.4351 23 9 10.3528 -3.8810 13.3234 24 9 11.4170 -2.0899 12.3860 25 6 9.0378 -0.9498 11.1328 26 6 8.2619 -1.1699 9.8327 27 6 4.8483 0.6250 5.8876 28 8 5.3265 1.8590 6.1869 29 6 4.1501 0.4173 4.7122 30 8 2.6270 -0.1463 2.2303 31 1 -0.3932 0.4418 -0.7651 32 1 1.7924 -0.5138 -0.8899 33 1 1.5614 2.4679 1.2086 34 1 3.5346 1.7703 -0.0321 35 1 1.2451 -2.7430 0.8937 36 1 2.4307 -3.2077 3.2683 37 1 3.4986 -2.9004 5.0585 38 1 4.7366 -2.5425 7.1309 39 1 5.6760 -2.1465 8.6465 40 1 5.2792 -2.0293 11.3304 41 1 6.5704 -3.1041 10.7425 42 1 6.9023 -0.8986 12.8262 43 1 6.8295 -2.6442 13.1653 44 1 11.0793 -2.2994 14.3871 45 1 8.8159 0.0429 11.5247 46 1 10.1067 -1.0325 10.9360 47 1 8.4837 -2.1626 9.4408 48 1 8.5558 -0.4164 9.1020 49 1 6.2194 2.0258 5.8554 50 1 3.9833 1.2371 4.0293 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:57 Heat of formation + Delta-G solvation = -222.501718 kcal Electronic energy + Delta-G solvation = -38243.123437 eV Core-core repulsion = 32646.112040 eV Total energy + Delta-G solvation = -5597.011397 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.147 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -50.08634 -48.19964 -43.88685 -41.77811 -40.56015 -39.52457 -38.15391 -37.84774 -37.63464 -35.03985 -34.36836 -33.48789 -31.96527 -31.50330 -30.85104 -29.74823 -27.13582 -26.31052 -24.64255 -24.17144 -23.94188 -23.31100 -22.47009 -21.86504 -21.44425 -21.27170 -19.84156 -19.39125 -18.94914 -18.70230 -18.66216 -18.59993 -18.11976 -17.67935 -17.20017 -16.70597 -16.65962 -16.43860 -16.13741 -16.03286 -15.89661 -15.69591 -15.53641 -15.11850 -15.06183 -14.84170 -14.62665 -14.55854 -14.42337 -14.38412 -14.23920 -14.19866 -14.01335 -13.75767 -13.67512 -13.61142 -13.44073 -13.27831 -12.86616 -12.81765 -12.74709 -12.44890 -12.28270 -12.25685 -12.06294 -11.95968 -11.56036 -11.26095 -11.13630 -10.97317 -10.80477 -10.46981 -10.18446 -10.07730 -9.13010 -5.16274 -0.91190 0.01863 0.50953 1.10719 1.29580 1.48386 1.57432 1.82980 1.87820 1.95009 2.06965 2.53425 2.71469 2.89174 3.18116 3.45100 3.47188 3.50750 3.56351 3.68575 3.70271 3.70718 3.80364 3.87822 3.88505 3.93497 3.97067 4.03494 4.09932 4.13182 4.24933 4.27095 4.33863 4.35755 4.48126 4.52535 4.58185 4.66587 4.68382 4.77961 4.81064 4.94552 4.95395 4.98091 5.02470 5.04304 5.08649 5.13476 5.18811 5.33510 5.38701 5.43687 5.59024 5.84436 6.42169 6.56814 6.80246 7.11124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.034 4.034 3 Si 0.799 3.201 4 C -0.031 4.031 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.023 3.977 9 C -0.106 4.106 10 C -0.046 4.046 11 C -0.176 4.176 12 C 0.557 3.443 13 O -0.562 6.562 14 N -0.707 5.707 15 C 0.145 3.855 16 H 0.068 0.932 17 C -0.115 4.115 18 C -0.108 4.108 19 C 0.076 3.924 20 H 0.079 0.921 21 O -0.390 6.390 22 C 0.398 3.602 23 F -0.218 7.218 24 F -0.220 7.220 25 C -0.138 4.138 26 C -0.119 4.119 27 C 0.161 3.839 28 O -0.495 6.495 29 C -0.161 4.161 30 O -0.198 6.198 31 H 0.414 0.586 32 H 0.131 0.869 33 H -0.313 1.313 34 H -0.295 1.295 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.416 0.584 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.408 0.592 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -7.572 -3.946 8.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.144 4.144 3 Si 0.706 3.294 4 C -0.081 4.081 5 C -0.193 4.193 6 C -0.184 4.184 7 C -0.055 4.055 8 C 0.022 3.978 9 C -0.124 4.124 10 C -0.065 4.065 11 C -0.180 4.180 12 C 0.345 3.655 13 O -0.441 6.441 14 N -0.360 5.360 15 C 0.041 3.959 16 H 0.086 0.914 17 C -0.152 4.152 18 C -0.146 4.146 19 C 0.019 3.981 20 H 0.097 0.903 21 O -0.311 6.311 22 C 0.307 3.693 23 F -0.200 7.200 24 F -0.202 7.202 25 C -0.176 4.176 26 C -0.158 4.158 27 C 0.114 3.886 28 O -0.308 6.308 29 C -0.180 4.180 30 O -0.097 6.097 31 H 0.267 0.733 32 H 0.148 0.852 33 H -0.242 1.242 34 H -0.223 1.223 35 H 0.195 0.805 36 H 0.208 0.792 37 H 0.192 0.808 38 H 0.197 0.803 39 H 0.255 0.745 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.222 0.778 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.268 0.732 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.427 -6.038 -2.392 6.650 hybrid contribution 0.678 -0.371 -0.440 0.890 sum -0.749 -6.409 -2.832 7.047 Atomic orbital electron populations 1.86416 1.16029 1.82499 1.52179 1.23899 0.86526 1.11155 0.92843 0.94479 0.76967 0.74308 0.83639 1.22228 1.00472 0.93770 0.91580 1.21915 1.03473 0.95530 0.98385 1.22331 1.00325 0.98820 0.96967 1.20757 1.05292 0.88189 0.91214 1.18015 0.95342 0.94052 0.90396 1.21089 0.99205 0.99253 0.92859 1.21240 0.93469 0.95172 0.96588 1.20542 1.05374 0.95196 0.96897 1.18165 0.79220 0.84390 0.83677 1.90827 1.51919 1.25401 1.75966 1.45800 1.56701 1.12363 1.21093 1.21025 0.90653 1.00423 0.83848 0.91376 1.21739 1.01343 0.99014 0.93141 1.21512 0.90817 1.04049 0.98260 1.22458 0.93132 0.99043 0.83432 0.90306 1.88440 1.32630 1.69452 1.40616 1.23835 0.81072 0.72829 0.91559 1.93043 1.94504 1.35355 1.97129 1.93041 1.73539 1.89889 1.63701 1.22059 1.00789 0.99738 0.95011 1.21792 0.94398 1.02742 0.96875 1.18470 0.94616 0.84348 0.91153 1.84731 1.37271 1.28643 1.80202 1.21489 1.01866 0.97552 0.97106 1.83956 1.58814 1.39444 1.27472 0.73287 0.85205 1.24182 1.22282 0.80488 0.79153 0.80782 0.80317 0.74539 0.88985 0.88776 0.91067 0.89202 0.77819 0.91614 0.91109 0.90057 0.92856 0.73206 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.94 12.86 -148.98 -1.92 -0.98 16 2 C -0.03 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.80 0.03 32.11 68.60 2.20 2.23 16 4 C -0.03 -0.19 6.24 24.90 0.16 -0.03 16 5 C -0.17 -0.48 10.78 22.11 0.24 -0.24 16 6 C -0.17 -0.24 10.26 22.40 0.23 -0.01 16 7 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 8 C 0.02 0.10 5.87 -20.08 -0.12 -0.02 16 9 C -0.11 0.33 9.48 22.25 0.21 0.54 16 10 C -0.05 0.19 9.47 22.24 0.21 0.40 16 11 C -0.18 -0.68 5.89 -19.97 -0.12 -0.80 16 12 C 0.56 3.45 7.72 86.63 0.67 4.12 16 13 O -0.56 -8.49 14.80 16.90 0.25 -8.24 16 14 N -0.71 1.28 5.02 -445.92 -2.24 -0.96 16 15 C 0.15 -0.09 2.46 45.00 0.11 0.02 16 16 H 0.07 0.36 7.58 -2.39 -0.02 0.34 16 17 C -0.11 0.71 5.39 30.60 0.16 0.87 16 18 C -0.11 0.36 5.57 30.59 0.17 0.54 16 19 C 0.08 -0.04 2.40 30.59 0.07 0.03 16 20 H 0.08 -0.10 7.20 -2.38 -0.02 -0.12 16 21 O -0.39 -0.39 10.29 -148.98 -1.53 -1.93 16 22 C 0.40 -0.75 6.26 113.37 0.71 -0.04 16 23 F -0.22 -0.28 16.63 44.97 0.75 0.47 16 24 F -0.22 -0.51 15.46 44.97 0.70 0.18 16 25 C -0.14 -0.20 5.39 30.59 0.17 -0.04 16 26 C -0.12 -0.06 5.49 30.60 0.17 0.11 16 27 C 0.16 1.34 6.71 22.81 0.15 1.49 16 28 O -0.50 -5.37 11.56 -69.06 -0.80 -6.17 16 29 C -0.16 -1.29 9.65 22.61 0.22 -1.07 16 30 O -0.20 -2.07 8.79 -6.02 -0.05 -2.13 16 31 H 0.41 -5.49 8.74 -74.06 -0.65 -6.13 16 32 H 0.13 -1.03 7.96 -2.39 -0.02 -1.05 16 33 H -0.31 -3.34 7.11 99.48 0.71 -2.64 16 34 H -0.30 -2.01 7.11 99.48 0.71 -1.31 16 35 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 36 H 0.19 -1.21 7.24 -2.91 -0.02 -1.23 16 37 H 0.17 -1.78 6.95 -2.91 -0.02 -1.80 16 38 H 0.18 -2.35 6.37 -2.91 -0.02 -2.37 16 39 H 0.42 -3.89 6.61 -92.71 -0.61 -4.50 16 40 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.21 -2.07 8.14 -2.39 -0.02 -2.09 16 45 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.07 0.22 6.50 -2.38 -0.02 0.21 16 47 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 48 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.41 1.46 9.06 -74.06 -0.67 0.78 16 50 H 0.12 1.23 7.90 -2.91 -0.02 1.21 16 Total: 0.00 -34.57 422.08 0.30 -34.27 By element: Atomic # 1 Polarization: -22.16 SS G_CDS: -0.85 Total: -23.01 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 3.79 Total: 6.24 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -2.24 Total: -0.96 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -4.05 Total: -19.44 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 1.44 Total: 0.65 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.20 Total: 2.23 kcal Total: -34.57 0.30 -34.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.228 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds