Wall clock time and date at job start Tue Mar 9 2021 13:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39277 * 121.03303 * 2 1 4 4 C 1.46495 * 134.20068 * 359.97438 * 3 2 1 5 5 C 1.50701 * 126.59800 * 359.96909 * 4 3 2 6 6 O 1.42896 * 109.46837 * 75.00633 * 5 4 3 7 7 Si 1.86297 * 109.46950 * 195.00421 * 5 4 3 8 8 C 1.34186 * 106.80188 * 179.97438 * 4 3 2 9 9 N 1.36945 * 109.95369 * 359.97438 * 8 4 3 10 10 C 1.37156 * 110.11399 * 0.02562 * 9 8 4 11 11 N 1.32826 * 132.97084 * 179.97438 * 10 9 8 12 12 C 1.31302 * 121.89138 * 180.02562 * 11 10 9 13 13 C 1.39755 * 121.02868 * 179.97438 * 2 1 3 14 14 C 1.47669 * 120.45241 * 0.03799 * 13 2 1 15 15 O 1.21575 * 120.00292 * 6.00738 * 14 13 2 16 16 N 1.34778 * 119.99740 * 186.00248 * 14 13 2 17 17 C 1.46500 * 119.99689 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.47429 * 324.99802 * 17 16 14 19 19 C 1.52994 * 109.47413 * 85.00269 * 17 16 14 20 20 C 1.52997 * 109.47481 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47228 * 299.99819 * 20 19 17 22 22 H 1.08996 * 109.46935 * 299.99975 * 21 20 19 23 23 O 1.42901 * 109.46947 * 179.97438 * 21 20 19 24 24 C 1.42892 * 114.00055 * 90.00236 * 23 21 20 25 25 F 1.39897 * 109.47380 * 299.99733 * 24 23 21 26 26 F 1.39905 * 109.47404 * 59.99691 * 24 23 21 27 27 C 1.53004 * 109.46742 * 59.99806 * 21 20 19 28 28 C 1.52997 * 109.47418 * 300.00078 * 27 21 20 29 29 H 1.09006 * 109.46652 * 96.29148 * 1 2 3 30 30 H 1.08994 * 109.47361 * 216.28970 * 1 2 3 31 31 H 1.09000 * 109.46730 * 336.29576 * 1 2 3 32 32 H 1.09000 * 109.47179 * 315.00166 * 5 4 3 33 33 H 0.96698 * 113.99779 * 179.97438 * 6 5 4 34 34 H 1.48497 * 110.00092 * 299.99984 * 7 5 4 35 35 H 1.48503 * 110.00294 * 61.32097 * 7 5 4 36 36 H 1.08001 * 125.01986 * 179.97438 * 8 4 3 37 37 H 0.96999 * 124.94787 * 180.02562 * 9 8 4 38 38 H 1.08009 * 119.30531 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99865 * 0.02562 * 16 14 13 40 40 H 1.09001 * 109.46967 * 300.00066 * 19 17 16 41 41 H 1.09004 * 109.46948 * 59.99204 * 19 17 16 42 42 H 1.08999 * 109.46978 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.46740 * 59.99970 * 20 19 17 44 44 H 1.09001 * 109.47470 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.46967 * 179.97438 * 27 21 20 46 46 H 1.08996 * 109.47267 * 60.00373 * 27 21 20 47 47 H 1.09008 * 109.47025 * 299.99928 * 28 27 21 48 48 H 1.09001 * 109.47376 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1934 0.0000 4 6 1.8517 2.6100 -0.0005 5 6 0.4527 3.1704 -0.0018 6 8 -0.1202 3.0241 1.2991 7 14 0.5077 4.9762 -0.4566 8 6 2.9949 3.3125 0.0004 9 7 4.0670 2.4604 0.0019 10 6 3.6349 1.1587 0.0015 11 7 4.2720 -0.0068 0.0021 12 6 3.6266 -1.1502 0.0011 13 6 2.2274 -1.1976 0.0005 14 6 1.5224 -2.4951 0.0003 15 8 0.3122 -2.5293 -0.1106 16 7 2.2206 -3.6414 0.1228 17 6 1.5211 -4.9286 0.1220 18 1 0.5575 -4.8189 0.6193 19 6 1.3012 -5.3887 -1.3204 20 6 0.5714 -6.7334 -1.3213 21 6 1.4141 -7.7716 -0.5778 22 1 2.3778 -7.8809 -1.0752 23 8 0.7321 -9.0273 -0.5781 24 6 1.0462 -9.8590 -1.6968 25 9 0.6977 -9.1998 -2.8805 26 9 2.4178 -10.1343 -1.7028 27 6 1.6340 -7.3115 0.8647 28 6 2.3639 -5.9669 0.8656 29 1 -0.3633 -0.1126 -1.0216 30 1 -0.3634 -0.8283 0.6082 31 1 -0.3633 0.9410 0.4131 32 1 -0.1541 2.6309 -0.7289 33 1 -1.0223 3.3646 1.3721 34 1 1.3321 5.7229 0.5271 35 1 1.0722 5.1396 -1.8204 36 1 3.0600 4.3905 -0.0001 37 1 4.9967 2.7371 0.0031 38 1 4.1869 -2.0736 0.0012 39 1 3.1861 -3.6140 0.2116 40 1 0.7012 -4.6489 -1.8503 41 1 2.2650 -5.4984 -1.8177 42 1 0.4143 -7.0608 -2.3490 43 1 -0.3923 -6.6239 -0.8239 44 1 0.4889 -10.7929 -1.6231 45 1 2.2340 -8.0514 1.3946 46 1 0.6703 -7.2022 1.3621 47 1 3.3277 -6.0763 0.3682 48 1 2.5209 -5.6393 1.8933 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15100670_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:02 Heat of formation + Delta-G solvation = -154.223545 kcal Electronic energy + Delta-G solvation = -35511.341715 eV Core-core repulsion = 30396.492166 eV Total energy + Delta-G solvation = -5114.849550 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.154 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.06700 -48.18121 -42.96557 -41.31270 -40.04446 -38.83056 -37.82956 -37.60371 -35.30136 -34.77873 -32.17439 -31.92344 -31.55272 -29.72399 -28.82488 -26.60285 -26.25094 -24.84441 -24.16784 -23.91351 -23.07288 -21.76105 -21.28084 -20.41729 -19.40130 -19.36162 -18.92288 -18.64176 -18.59383 -18.32098 -17.80170 -17.34126 -16.80206 -16.61146 -16.30779 -15.94240 -15.67483 -15.49471 -15.33282 -15.15995 -15.13601 -14.98079 -14.82065 -14.58739 -14.42394 -14.31557 -14.15411 -14.04171 -13.81398 -13.72615 -13.68182 -13.41309 -13.37509 -13.24993 -13.04459 -12.73688 -12.60005 -12.37989 -12.21511 -11.97609 -11.97276 -11.52328 -11.24689 -11.14218 -11.05488 -10.52379 -10.17198 -10.15371 -9.72457 -9.26966 -4.91834 -0.42535 -0.18593 1.23607 1.33476 1.51781 1.72511 1.76135 1.91925 1.98527 2.10785 2.68214 2.73794 3.20668 3.32780 3.46186 3.50607 3.54220 3.60462 3.65379 3.73329 3.82280 3.84815 3.97247 3.98103 4.03758 4.05365 4.07936 4.17007 4.23710 4.31573 4.39671 4.41549 4.51709 4.56803 4.64246 4.70354 4.72457 4.83903 4.93178 5.00078 5.06486 5.07069 5.08555 5.14813 5.20247 5.23880 5.33128 5.48152 5.61171 5.62000 6.06378 6.45366 6.71563 6.96967 7.14509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.068 3.932 3 C -0.169 4.169 4 C -0.157 4.157 5 C -0.056 4.056 6 O -0.563 6.563 7 Si 0.786 3.214 8 C 0.065 3.935 9 N -0.562 5.562 10 C 0.288 3.712 11 N -0.517 5.517 12 C 0.183 3.817 13 C -0.241 4.241 14 C 0.573 3.427 15 O -0.560 6.560 16 N -0.710 5.710 17 C 0.147 3.853 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.137 4.137 21 C 0.075 3.925 22 H 0.076 0.924 23 O -0.389 6.389 24 C 0.397 3.603 25 F -0.220 7.220 26 F -0.219 7.219 27 C -0.107 4.107 28 C -0.116 4.116 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.401 0.599 34 H -0.280 1.280 35 H -0.288 1.288 36 H 0.199 0.801 37 H 0.437 0.563 38 H 0.198 0.802 39 H 0.413 0.587 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.206 0.794 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 1.670 0.585 1.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.164 4.164 5 C -0.165 4.165 6 O -0.373 6.373 7 Si 0.689 3.311 8 C -0.061 4.061 9 N -0.169 5.169 10 C 0.055 3.945 11 N -0.230 5.230 12 C 0.015 3.985 13 C -0.248 4.248 14 C 0.361 3.639 15 O -0.440 6.440 16 N -0.362 5.362 17 C 0.043 3.957 18 H 0.093 0.907 19 C -0.159 4.159 20 C -0.175 4.175 21 C 0.019 3.981 22 H 0.094 0.906 23 O -0.311 6.311 24 C 0.306 3.694 25 F -0.202 7.202 26 F -0.201 7.201 27 C -0.145 4.145 28 C -0.154 4.154 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.252 0.748 34 H -0.207 1.207 35 H -0.215 1.215 36 H 0.216 0.784 37 H 0.278 0.722 38 H 0.215 0.785 39 H 0.251 0.749 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.222 0.778 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.283 2.176 0.536 2.582 hybrid contribution 0.567 -0.308 -0.471 0.799 sum 1.850 1.868 0.064 2.630 Atomic orbital electron populations 1.21130 0.88697 1.04500 1.03395 1.20128 0.97622 0.89707 0.86633 1.19740 0.93285 0.94225 1.10395 1.20010 0.94896 0.90316 1.11205 1.24355 0.90374 1.12813 0.88934 1.86486 1.35531 1.86215 1.29067 0.93770 0.88698 0.72651 0.76013 1.22019 0.85022 0.96490 1.02590 1.41510 1.10252 1.02021 1.63075 1.18772 0.89640 0.86660 0.99432 1.66529 1.40828 0.96321 1.19351 1.23062 0.89902 0.95204 0.90357 1.20551 0.95380 0.93554 1.15315 1.17898 0.86472 0.83808 0.75700 1.90741 1.14886 1.87457 1.50938 1.45810 1.11399 1.04797 1.74147 1.21019 0.96842 0.81925 0.95920 0.90651 1.21800 1.01263 0.95934 0.96932 1.22050 0.99671 0.94546 1.01222 1.22464 0.95177 0.81695 0.98794 0.90594 1.88436 1.68233 1.30235 1.44149 1.23849 0.77826 0.93392 0.74283 1.93040 1.91834 1.84022 1.51272 1.93043 1.37054 1.93972 1.96064 1.21503 1.02295 0.97013 0.93721 1.21743 0.99106 0.92451 1.02101 0.90220 0.89726 0.89396 0.90150 0.74782 1.20686 1.21530 0.78432 0.72191 0.78507 0.74896 0.92589 0.90473 0.91221 0.91262 0.77758 0.89425 0.90749 0.89187 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.46 71.24 0.60 -0.30 16 2 C 0.07 0.61 5.98 -19.25 -0.12 0.49 16 3 C -0.17 -1.53 6.16 -20.19 -0.12 -1.66 16 4 C -0.16 -0.85 5.61 -18.64 -0.10 -0.96 16 5 C -0.06 0.01 1.87 71.24 0.13 0.15 16 6 O -0.56 -0.01 11.64 -148.98 -1.73 -1.74 16 7 Si 0.79 -3.57 30.80 68.60 2.11 -1.46 16 8 C 0.07 0.14 10.44 82.97 0.87 1.01 16 9 N -0.56 -1.48 6.04 -192.23 -1.16 -2.64 16 10 C 0.29 2.32 8.42 134.02 1.13 3.45 16 11 N -0.52 -3.70 10.37 -191.74 -1.99 -5.69 16 12 C 0.18 0.55 10.67 85.20 0.91 1.46 16 13 C -0.24 -1.50 5.89 -19.99 -0.12 -1.62 16 14 C 0.57 3.41 7.68 86.73 0.67 4.08 16 15 O -0.56 -6.89 13.16 -3.95 -0.05 -6.94 16 16 N -0.71 0.86 5.03 -445.58 -2.24 -1.38 16 17 C 0.15 -0.13 2.45 44.99 0.11 -0.02 16 18 H 0.08 0.27 7.58 -2.39 -0.02 0.25 16 19 C -0.12 -0.07 5.49 30.59 0.17 0.10 16 20 C -0.14 -0.17 5.39 30.59 0.16 -0.01 16 21 C 0.08 -0.03 2.40 30.60 0.07 0.05 16 22 H 0.08 -0.04 7.20 -2.39 -0.02 -0.06 16 23 O -0.39 -0.39 10.29 -148.98 -1.53 -1.92 16 24 C 0.40 -0.67 6.26 113.37 0.71 0.04 16 25 F -0.22 -0.55 15.46 44.97 0.70 0.14 16 26 F -0.22 -0.39 16.63 44.97 0.75 0.36 16 27 C -0.11 0.35 5.57 30.59 0.17 0.52 16 28 C -0.12 0.66 5.39 30.59 0.16 0.83 16 29 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.89 5.96 -2.39 -0.01 0.87 16 31 H 0.09 0.46 4.79 -2.39 -0.01 0.45 16 32 H 0.08 -0.16 7.13 -2.39 -0.02 -0.17 16 33 H 0.40 -4.20 8.74 -74.06 -0.65 -4.85 16 34 H -0.28 -0.05 7.04 99.48 0.70 0.65 16 35 H -0.29 -0.29 7.11 99.48 0.71 0.42 16 36 H 0.20 -0.64 6.31 -2.91 -0.02 -0.66 16 37 H 0.44 -1.39 8.96 -92.71 -0.83 -2.22 16 38 H 0.20 -1.16 6.43 -2.91 -0.02 -1.18 16 39 H 0.41 -3.04 6.68 -92.71 -0.62 -3.66 16 40 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 42 H 0.07 0.22 6.50 -2.39 -0.02 0.20 16 43 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.21 -2.07 8.14 -2.39 -0.02 -2.09 16 45 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 46 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 48 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: 0.00 -26.14 387.26 -0.74 -26.88 By element: Atomic # 1 Polarization: -12.21 SS G_CDS: -1.00 Total: -13.21 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.41 Total: 7.61 kcal Atomic # 7 Polarization: -4.33 SS G_CDS: -5.39 Total: -9.72 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -3.32 Total: -10.60 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 1.44 Total: 0.50 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.11 Total: -1.46 kcal Total: -26.14 -0.74 -26.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15100670_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.344 kcal (2) G-P(sol) polarization free energy of solvation -26.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds