Wall clock time and date at job start Tue Mar 9 2021 12:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00083 * 2 1 4 4 O 1.20816 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99732 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.85032 * 48.80674 * 5 3 2 7 7 C 1.53782 * 113.61232 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08301 * 139.97925 * 7 5 3 9 9 C 1.52997 * 113.61211 * 89.11533 * 8 7 5 10 10 N 1.46498 * 109.47536 * 60.31546 * 9 8 7 11 11 C 1.34771 * 120.00552 * 175.25675 * 10 9 8 12 12 O 1.21707 * 119.99987 * 359.97438 * 11 10 9 13 13 C 1.46425 * 120.00416 * 180.02562 * 11 10 9 14 14 C 1.34812 * 120.00363 * 179.97438 * 13 11 10 15 15 C 1.47209 * 120.00029 * 179.97438 * 14 13 11 16 16 C 1.39836 * 120.17094 * 0.31876 * 15 14 13 17 17 C 1.37888 * 119.82446 * 180.23129 * 16 15 14 18 18 C 1.38407 * 120.17207 * 359.47213 * 17 16 15 19 19 C 1.50697 * 119.82953 * 180.27800 * 18 17 16 20 20 O 1.42895 * 109.47103 * 300.00307 * 19 18 17 21 21 Si 1.86298 * 109.47274 * 179.97438 * 19 18 17 22 22 C 1.38397 * 120.34075 * 0.25740 * 18 17 16 23 23 C 1.37889 * 120.17590 * 359.97438 * 22 18 17 24 24 O 1.42896 * 113.61500 * 219.93105 * 8 7 5 25 25 C 1.42901 * 113.99761 * 163.27388 * 24 8 7 26 26 C 1.53782 * 113.61261 * 277.49439 * 5 3 2 27 27 H 1.09004 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47286 * 300.00022 * 1 2 3 29 29 H 1.09001 * 109.47351 * 60.00149 * 1 2 3 30 30 H 1.09000 * 113.61629 * 25.42746 * 7 5 3 31 31 H 1.08999 * 113.68923 * 254.54345 * 7 5 3 32 32 H 1.09000 * 109.47315 * 300.31479 * 9 8 7 33 33 H 1.09002 * 109.47313 * 180.31426 * 9 8 7 34 34 H 0.96996 * 119.99859 * 355.25525 * 10 9 8 35 35 H 1.08004 * 120.00186 * 359.97438 * 13 11 10 36 36 H 1.08003 * 119.99567 * 0.02562 * 14 13 11 37 37 H 1.08001 * 120.08516 * 359.97438 * 16 15 14 38 38 H 1.08000 * 119.91329 * 179.74947 * 17 16 15 39 39 H 1.09007 * 109.46780 * 60.00127 * 19 18 17 40 40 H 0.96701 * 114.00226 * 179.97438 * 20 19 18 41 41 H 1.48497 * 109.99552 * 60.00083 * 21 19 18 42 42 H 1.48498 * 109.99719 * 181.31794 * 21 19 18 43 43 H 1.08003 * 119.91318 * 180.02562 * 22 18 17 44 44 H 1.08003 * 120.08603 * 180.02562 * 23 22 18 45 45 H 1.09003 * 109.46847 * 176.35891 * 25 24 8 46 46 H 1.09006 * 109.47187 * 296.36090 * 25 24 8 47 47 H 1.08997 * 109.47494 * 56.36206 * 25 24 8 48 48 H 1.08999 * 113.61281 * 105.47633 * 26 5 3 49 49 H 1.08998 * 113.61569 * 334.57168 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0233 0.6364 -0.7567 7 6 4.1078 2.7141 0.0001 8 6 5.1815 2.2261 0.9870 9 6 6.4442 1.6950 0.3055 10 7 7.0496 2.7594 -0.4987 11 6 8.2290 2.5495 -1.1163 12 8 8.7913 1.4758 -1.0056 13 6 8.8344 3.6135 -1.9196 14 6 10.0144 3.4038 -2.5370 15 6 10.6227 4.4733 -3.3450 16 6 9.9830 5.7106 -3.4692 17 6 10.5568 6.7058 -4.2318 18 6 11.7681 6.4864 -4.8645 19 6 12.3914 7.5816 -5.6909 20 8 11.5048 7.9405 -6.7525 21 14 14.0040 6.9803 -6.4040 22 6 12.4101 5.2665 -4.7417 23 6 11.8467 4.2597 -3.9866 24 8 5.4653 3.1590 2.0315 25 6 6.1579 2.5915 3.1452 26 6 4.1916 1.1231 1.3962 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.4175 3.4401 0.4297 31 1 4.5106 3.0309 -0.9619 32 1 6.1834 0.8560 -0.3395 33 1 7.1541 1.3637 1.0634 34 1 6.6017 3.6152 -0.5867 35 1 8.3357 4.5665 -2.0176 36 1 10.5129 2.4507 -2.4393 37 1 9.0399 5.8848 -2.9725 38 1 10.0620 7.6606 -4.3320 39 1 12.5752 8.4521 -5.0610 40 1 11.8419 8.6421 -7.3263 41 1 13.7675 5.7934 -7.2645 42 1 14.6441 8.0618 -7.1951 43 1 13.3553 5.1029 -5.2380 44 1 12.3491 3.3084 -3.8914 45 1 6.3928 3.3758 3.8649 46 1 5.5279 1.8393 3.6200 47 1 7.0815 2.1267 2.8002 48 1 4.6621 0.1538 1.5610 49 1 3.5243 1.4143 2.2073 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:18 Heat of formation + Delta-G solvation = -116.233624 kcal Electronic energy + Delta-G solvation = -31195.145658 eV Core-core repulsion = 26669.876483 eV Total energy + Delta-G solvation = -4525.269175 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26886 -41.07312 -40.58743 -40.06992 -37.87580 -37.73398 -36.86647 -35.48394 -35.15725 -32.08071 -31.61717 -29.94481 -28.68368 -28.11025 -27.13332 -26.57980 -25.57243 -24.02557 -23.58856 -22.10577 -21.87008 -20.67509 -19.94795 -19.22176 -18.66196 -18.46213 -18.20377 -17.63100 -17.53131 -17.07870 -16.75197 -16.63788 -16.32969 -16.21686 -15.97365 -15.95969 -15.47560 -15.26058 -15.09676 -14.64280 -14.49720 -14.33959 -14.32415 -14.09831 -13.88774 -13.71090 -13.63917 -13.38309 -13.26265 -13.16721 -13.02289 -12.71605 -12.61874 -12.27151 -12.08994 -12.02070 -11.87377 -11.77647 -11.60481 -11.41558 -11.32519 -11.15525 -10.63452 -10.50554 -10.19812 -9.96623 -9.21976 -4.93829 -0.53964 0.41005 0.89145 1.01878 1.29173 1.58766 1.63458 1.93871 2.04425 2.23520 2.70971 2.79341 3.13428 3.19900 3.35417 3.36107 3.44419 3.60705 3.75205 3.84528 3.88076 3.97372 4.09764 4.16802 4.20794 4.24489 4.25654 4.27633 4.33099 4.38770 4.44586 4.49770 4.53580 4.56161 4.59393 4.63139 4.68219 4.80891 4.84784 4.89110 4.89334 4.96529 5.05885 5.11243 5.15677 5.30042 5.32063 5.40737 5.49098 5.61918 5.90931 6.10934 6.48127 6.56494 6.61040 7.16647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.153 0.847 7 C -0.100 4.100 8 C 0.084 3.916 9 C 0.115 3.885 10 N -0.709 5.709 11 C 0.546 3.454 12 O -0.587 6.587 13 C -0.213 4.213 14 C -0.015 4.015 15 C -0.084 4.084 16 C -0.102 4.102 17 C -0.107 4.107 18 C -0.076 4.076 19 C -0.087 4.087 20 O -0.558 6.558 21 Si 0.760 3.240 22 C -0.127 4.127 23 C -0.094 4.094 24 O -0.380 6.380 25 C 0.021 3.979 26 C -0.131 4.131 27 H 0.129 0.871 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.395 0.605 41 H -0.301 1.301 42 H -0.287 1.287 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.109 0.891 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 0.784 1.956 2.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.170 0.830 7 C -0.138 4.138 8 C 0.043 3.957 9 C -0.009 4.009 10 N -0.360 5.360 11 C 0.336 3.664 12 O -0.470 6.470 13 C -0.234 4.234 14 C -0.035 4.035 15 C -0.084 4.084 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.076 4.076 19 C -0.195 4.195 20 O -0.368 6.368 21 Si 0.666 3.334 22 C -0.144 4.144 23 C -0.112 4.112 24 O -0.299 6.299 25 C -0.075 4.075 26 C -0.169 4.169 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.246 0.754 41 H -0.229 1.229 42 H -0.214 1.214 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.128 0.872 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.795 -0.100 1.620 2.420 hybrid contribution -1.153 0.998 -0.776 1.711 sum 0.642 0.898 0.844 1.389 Atomic orbital electron populations 1.23539 0.74962 1.05674 1.02473 1.86514 1.24807 1.33000 1.83470 1.23890 0.92389 0.81075 0.71077 1.90678 1.67849 1.37437 1.46565 1.22445 0.86325 1.01296 1.02394 0.82984 1.23040 0.95826 0.94954 0.99966 1.22952 0.92194 0.91144 0.89367 1.21596 0.93545 0.90747 0.95022 1.45656 1.21993 1.18087 1.50270 1.18628 0.80711 0.87637 0.79382 1.90820 1.63516 1.28286 1.64379 1.22966 0.98464 1.00046 1.01901 1.22383 0.93605 0.97198 0.90318 1.19140 0.95909 0.94037 0.99307 1.21682 1.00367 0.92043 0.97837 1.21112 0.94873 1.00123 0.96367 1.19699 0.96100 0.94478 0.97301 1.25017 1.02462 1.00246 0.91820 1.86538 1.45651 1.60773 1.43831 0.94182 0.77267 0.77077 0.84909 1.21101 1.00614 0.92562 1.00118 1.21584 0.94386 0.99877 0.95325 1.87976 1.77474 1.35679 1.28729 1.22917 0.95970 1.00313 0.88289 1.23483 0.97419 1.01101 0.94895 0.85271 0.92030 0.92018 0.88628 0.87984 0.89163 0.90772 0.74713 0.82664 0.85226 0.83344 0.84830 0.88374 0.75413 1.22859 1.21383 0.83952 0.83292 0.88744 0.92719 0.93441 0.87233 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.86 10.56 -51.40 -0.54 -1.40 16 3 C 0.47 1.65 7.48 71.24 0.53 2.18 16 4 O -0.54 -5.34 15.65 22.00 0.34 -5.00 16 5 C -0.11 0.31 3.91 -11.01 -0.04 0.27 16 6 H 0.15 -1.08 7.65 -2.39 -0.02 -1.10 16 7 C -0.10 0.24 6.53 31.12 0.20 0.45 16 8 C 0.08 -0.26 0.89 -10.28 -0.01 -0.26 16 9 C 0.11 -0.25 5.01 86.38 0.43 0.18 16 10 N -0.71 1.14 5.24 -467.35 -2.45 -1.31 16 11 C 0.55 1.98 7.74 86.38 0.67 2.65 16 12 O -0.59 -6.93 16.23 -4.37 -0.07 -7.01 16 13 C -0.21 0.11 9.41 23.62 0.22 0.33 16 14 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 15 C -0.08 -0.06 5.87 -20.15 -0.12 -0.18 16 16 C -0.10 0.04 9.41 22.57 0.21 0.25 16 17 C -0.11 -0.11 9.59 22.23 0.21 0.10 16 18 C -0.08 -0.11 5.43 -19.79 -0.11 -0.21 16 19 C -0.09 0.11 2.81 71.23 0.20 0.31 16 20 O -0.56 -0.87 12.74 -148.98 -1.90 -2.77 16 21 Si 0.76 -1.70 29.77 68.60 2.04 0.34 16 22 C -0.13 -0.02 8.65 22.22 0.19 0.17 16 23 C -0.09 0.00 9.80 22.57 0.22 0.22 16 24 O -0.38 -0.14 10.64 -148.98 -1.58 -1.73 16 25 C 0.02 -0.06 10.63 113.37 1.21 1.15 16 26 C -0.13 0.56 6.21 31.11 0.19 0.76 16 27 H 0.13 -0.89 8.14 -2.38 -0.02 -0.90 16 28 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 29 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 30 H 0.10 0.18 7.44 -2.39 -0.02 0.16 16 31 H 0.10 -0.54 7.38 -2.39 -0.02 -0.56 16 32 H 0.09 -0.29 7.34 -2.39 -0.02 -0.31 16 33 H 0.07 0.00 6.50 -2.39 -0.02 -0.02 16 34 H 0.42 -2.31 7.76 -92.71 -0.72 -3.03 16 35 H 0.16 -0.98 6.07 -2.91 -0.02 -1.00 16 36 H 0.13 0.33 7.52 -2.91 -0.02 0.30 16 37 H 0.15 -0.77 6.17 -2.91 -0.02 -0.79 16 38 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 39 H 0.10 -0.53 7.96 -2.38 -0.02 -0.55 16 40 H 0.40 -2.50 8.74 -74.06 -0.65 -3.14 16 41 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 42 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 43 H 0.14 -0.48 4.85 -2.91 -0.01 -0.50 16 44 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 45 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.05 -0.26 7.67 -2.38 -0.02 -0.27 16 47 H 0.05 -0.14 6.49 -2.39 -0.02 -0.16 16 48 H 0.11 -0.83 8.10 -2.39 -0.02 -0.85 16 49 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 Total: 0.00 -25.27 408.84 1.15 -24.11 By element: Atomic # 1 Polarization: -14.65 SS G_CDS: -0.33 Total: -14.97 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.64 Total: 9.73 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -2.45 Total: -1.31 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -3.75 Total: -17.90 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.04 Total: 0.34 kcal Total: -25.27 1.15 -24.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.121 kcal (2) G-P(sol) polarization free energy of solvation -25.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds