Wall clock time and date at job start Tue Mar 9 2021 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00153 * 2 1 4 4 O 1.20823 * 120.00020 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99882 * 180.02562 * 3 2 1 6 6 H 1.08998 * 112.85049 * 311.19607 * 5 3 2 7 7 C 1.53782 * 113.61414 * 82.50518 * 5 3 2 8 8 C 1.53777 * 87.08299 * 139.98173 * 7 5 3 9 9 C 1.53000 * 113.69593 * 89.12401 * 8 7 5 10 10 N 1.46497 * 109.46897 * 70.42977 * 9 8 7 11 11 C 1.34779 * 120.00285 * 175.40328 * 10 9 8 12 12 O 1.21281 * 119.99720 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00347 * 180.02562 * 11 10 9 14 14 O 1.42907 * 109.47028 * 179.97438 * 13 11 10 15 15 C 1.35899 * 116.99792 * 179.97438 * 14 13 11 16 16 C 1.38731 * 120.05695 * 359.72110 * 15 14 13 17 17 C 1.38146 * 119.94526 * 179.74399 * 16 15 14 18 18 C 1.38267 * 120.05460 * 0.51137 * 17 16 15 19 19 C 1.50696 * 119.94465 * 179.74510 * 18 17 16 20 20 O 1.42904 * 109.47252 * 120.02435 * 19 18 17 21 21 Si 1.86299 * 109.47224 * 0.02562 * 19 18 17 22 22 C 1.38270 * 120.10716 * 359.77006 * 18 17 16 23 23 C 1.38136 * 120.06031 * 359.97126 * 22 18 17 24 24 O 1.42906 * 113.61538 * 220.01995 * 8 7 5 25 25 C 1.42897 * 114.00260 * 157.74968 * 24 8 7 26 26 C 1.53781 * 87.08128 * 334.56700 * 8 7 5 27 27 H 1.09002 * 109.47558 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46858 * 299.99883 * 1 2 3 29 29 H 1.09001 * 109.47372 * 59.99354 * 1 2 3 30 30 H 1.08998 * 113.61704 * 25.42722 * 7 5 3 31 31 H 1.09002 * 113.61156 * 254.52846 * 7 5 3 32 32 H 1.09001 * 109.47383 * 190.42979 * 9 8 7 33 33 H 1.08999 * 109.47145 * 310.43133 * 9 8 7 34 34 H 0.97001 * 120.00350 * 355.39660 * 10 9 8 35 35 H 1.08997 * 109.46939 * 299.99315 * 13 11 10 36 36 H 1.08993 * 109.47005 * 59.99482 * 13 11 10 37 37 H 1.08009 * 120.02835 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.97103 * 180.23828 * 17 16 15 39 39 H 1.09001 * 109.46949 * 240.02382 * 19 18 17 40 40 H 0.96697 * 113.99789 * 300.00121 * 20 19 18 41 41 H 1.48496 * 110.00053 * 180.02562 * 21 19 18 42 42 H 1.48500 * 110.00178 * 301.32199 * 21 19 18 43 43 H 1.08002 * 119.96651 * 179.97438 * 22 18 17 44 44 H 1.08004 * 120.03271 * 179.97438 * 23 22 18 45 45 H 1.08993 * 109.47181 * 177.11600 * 25 24 8 46 46 H 1.09006 * 109.47045 * 57.11037 * 25 24 8 47 47 H 1.09001 * 109.47234 * 297.11697 * 25 24 8 48 48 H 1.08994 * 113.61792 * 139.98312 * 26 8 7 49 49 H 1.09007 * 113.61394 * 270.80322 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0239 0.6361 0.7549 7 6 4.1906 1.1237 -1.3979 8 6 5.1807 2.2268 -0.9887 9 6 6.4448 1.6971 -0.3087 10 7 7.2747 1.0011 -1.2951 11 6 8.4871 0.5292 -0.9430 12 8 8.8912 0.6812 0.1903 13 6 9.3410 -0.1863 -1.9579 14 8 10.5699 -0.5873 -1.3485 15 6 11.4598 -1.2505 -2.1327 16 6 11.1542 -1.5151 -3.4598 17 6 12.0628 -2.1848 -4.2563 18 6 13.2715 -2.6006 -3.7291 19 6 14.2583 -3.3360 -4.5987 20 8 15.4802 -2.5976 -4.6621 21 14 13.5560 -3.5226 -6.3141 22 6 13.5759 -2.3431 -2.4051 23 6 12.6731 -1.6691 -1.6059 24 8 5.4623 3.1598 -2.0338 25 6 5.9450 4.4227 -1.5712 26 6 4.1079 2.7141 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.5226 1.4152 -2.2084 31 1 4.6608 0.1544 -1.5635 32 1 7.0057 2.5301 0.1151 33 1 6.1670 1.0045 0.4858 34 1 6.9516 0.8797 -2.2016 35 1 8.8116 -1.0666 -2.3222 36 1 9.5510 0.4827 -2.7923 37 1 10.2086 -1.1938 -3.8711 38 1 11.8269 -2.3876 -5.2905 39 1 14.4511 -4.3219 -4.1758 40 1 15.3837 -1.7082 -5.0292 41 1 14.5195 -4.2468 -7.1814 42 1 12.2689 -4.2611 -6.2584 43 1 14.5206 -2.6693 -1.9955 44 1 12.9112 -1.4686 -0.5717 45 1 6.1833 5.0558 -2.4258 46 1 6.8417 4.2709 -0.9701 47 1 5.1784 4.9047 -0.9645 48 1 4.5113 3.0287 0.9619 49 1 3.4181 3.4415 -0.4286 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15102698_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:14 Heat of formation + Delta-G solvation = -166.986205 kcal Electronic energy + Delta-G solvation = -32367.007061 eV Core-core repulsion = 27649.081038 eV Total energy + Delta-G solvation = -4717.926024 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.26979 -41.51704 -40.89120 -40.16159 -38.93823 -37.71298 -37.10553 -36.84760 -35.53981 -32.42694 -31.72607 -30.68195 -29.42866 -28.25602 -27.86868 -26.64117 -26.16611 -25.48514 -23.93568 -22.38789 -22.11244 -21.61965 -20.16049 -19.48228 -19.25571 -18.51421 -18.18092 -18.00267 -17.54234 -17.46449 -17.11666 -16.87426 -16.66369 -16.44986 -16.18133 -16.03612 -15.86830 -15.74435 -15.49489 -15.33772 -14.77254 -14.60845 -14.53212 -14.33275 -14.29914 -13.96834 -13.72626 -13.57767 -13.51007 -13.34526 -13.23145 -12.94823 -12.76344 -12.66783 -12.23431 -12.07120 -12.05066 -12.03575 -11.87074 -11.71713 -11.57519 -11.43745 -11.08446 -10.65536 -10.39184 -10.25755 -10.02656 -9.20553 -4.97203 0.29257 0.32595 1.02050 1.35981 1.42638 1.45725 1.65845 1.65987 2.00450 2.45552 2.67714 2.73945 3.12335 3.26431 3.34802 3.39248 3.55925 3.59505 3.76052 3.84795 3.89585 3.97834 4.06922 4.10173 4.11400 4.25089 4.26988 4.29101 4.32653 4.38657 4.44666 4.50445 4.52244 4.57020 4.60563 4.63096 4.68359 4.69044 4.78165 4.86728 4.90285 4.98962 5.04086 5.17385 5.23560 5.27317 5.30830 5.51663 5.71163 6.08310 6.26623 6.44825 6.61486 6.81081 7.09330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.108 4.108 6 H 0.153 0.847 7 C -0.094 4.094 8 C 0.085 3.915 9 C 0.119 3.881 10 N -0.703 5.703 11 C 0.516 3.484 12 O -0.572 6.572 13 C 0.036 3.964 14 O -0.319 6.319 15 C 0.121 3.879 16 C -0.199 4.199 17 C -0.076 4.076 18 C -0.161 4.161 19 C -0.074 4.074 20 O -0.559 6.559 21 Si 0.782 3.218 22 C -0.061 4.061 23 C -0.166 4.166 24 O -0.375 6.375 25 C 0.023 3.977 26 C -0.137 4.137 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.421 0.579 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.102 0.898 40 H 0.395 0.605 41 H -0.304 1.304 42 H -0.280 1.280 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.046 0.954 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 0.427 -5.508 6.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.127 4.127 6 H 0.171 0.829 7 C -0.131 4.131 8 C 0.045 3.955 9 C -0.005 4.005 10 N -0.357 5.357 11 C 0.302 3.698 12 O -0.450 6.450 13 C -0.042 4.042 14 O -0.232 6.232 15 C 0.076 3.924 16 C -0.218 4.218 17 C -0.094 4.094 18 C -0.162 4.162 19 C -0.183 4.183 20 O -0.367 6.367 21 Si 0.688 3.312 22 C -0.079 4.079 23 C -0.185 4.185 24 O -0.294 6.294 25 C -0.073 4.073 26 C -0.176 4.176 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.259 0.741 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.120 0.880 40 H 0.245 0.755 41 H -0.233 1.233 42 H -0.207 1.207 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.115 0.885 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.115 0.885 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.694 -0.244 -5.045 6.257 hybrid contribution -0.350 0.024 0.816 0.888 sum -4.044 -0.220 -4.229 5.855 Atomic orbital electron populations 1.23539 0.74999 1.05667 1.02440 1.86514 1.24761 1.32966 1.83443 1.23916 0.92440 0.81056 0.71020 1.90680 1.67887 1.37527 1.46652 1.22488 0.86278 1.01148 1.02748 0.82949 1.23020 0.96154 0.99497 0.94456 1.22948 0.91846 0.91419 0.89294 1.21571 0.90081 0.97343 0.91541 1.45463 1.16482 1.57745 1.16017 1.20482 0.82030 0.78810 0.88498 1.90775 1.72801 1.58394 1.23027 1.22737 0.84114 1.02147 0.95167 1.86125 1.27319 1.70853 1.38936 1.19196 0.89718 0.92992 0.90472 1.21510 1.02987 1.04959 0.92308 1.21069 0.92390 0.95785 1.00115 1.20356 0.96930 1.03465 0.95448 1.25186 0.87575 0.96403 1.09163 1.86463 1.30040 1.32842 1.87366 0.93745 0.75707 0.87614 0.74117 1.20891 0.98488 0.95568 0.92979 1.20613 0.93089 1.03387 1.01386 1.87938 1.85767 1.24250 1.31407 1.22881 0.98286 0.84589 1.01541 1.23542 0.97220 0.95310 1.01479 0.85263 0.92151 0.91974 0.88458 0.86675 0.91176 0.89136 0.74068 0.85509 0.85578 0.81713 0.82982 0.88015 0.75528 1.23298 1.20718 0.85023 0.85589 0.88461 0.93581 0.93337 0.88501 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.37 10.57 -51.37 -0.54 -0.91 16 3 C 0.47 1.02 7.48 71.23 0.53 1.55 16 4 O -0.54 -4.82 15.65 21.97 0.34 -4.48 16 5 C -0.11 0.50 3.91 -11.01 -0.04 0.46 16 6 H 0.15 -1.34 7.60 -2.39 -0.02 -1.36 16 7 C -0.09 0.67 6.99 31.12 0.22 0.89 16 8 C 0.09 -0.48 0.78 -10.27 -0.01 -0.49 16 9 C 0.12 -0.55 4.87 86.38 0.42 -0.13 16 10 N -0.70 4.21 5.47 -463.07 -2.53 1.67 16 11 C 0.52 0.27 7.91 87.66 0.69 0.96 16 12 O -0.57 -6.83 16.50 16.01 0.26 -6.57 16 13 C 0.04 -0.17 5.22 71.24 0.37 0.20 16 14 O -0.32 -1.43 9.67 -73.37 -0.71 -2.14 16 15 C 0.12 0.29 6.69 22.51 0.15 0.44 16 16 C -0.20 0.71 9.04 22.37 0.20 0.91 16 17 C -0.08 0.27 8.66 22.25 0.19 0.46 16 18 C -0.16 0.05 5.39 -19.85 -0.11 -0.06 16 19 C -0.07 0.06 2.82 71.23 0.20 0.26 16 20 O -0.56 -0.20 12.77 -148.98 -1.90 -2.10 16 21 Si 0.78 -2.82 29.78 68.60 2.04 -0.77 16 22 C -0.06 -0.15 9.60 22.25 0.21 0.07 16 23 C -0.17 -0.69 9.99 22.36 0.22 -0.47 16 24 O -0.37 1.04 10.59 -148.98 -1.58 -0.54 16 25 C 0.02 -0.10 10.61 113.37 1.20 1.11 16 26 C -0.14 0.52 5.76 31.12 0.18 0.70 16 27 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 30 H 0.10 -0.49 8.09 -2.39 -0.02 -0.51 16 31 H 0.11 -1.30 8.10 -2.39 -0.02 -1.32 16 32 H 0.07 -0.11 7.05 -2.39 -0.02 -0.13 16 33 H 0.09 -0.47 7.31 -2.39 -0.02 -0.49 16 34 H 0.42 -4.88 8.46 -92.71 -0.78 -5.66 16 35 H 0.13 -1.44 7.65 -2.39 -0.02 -1.46 16 36 H 0.13 -1.39 7.67 -2.39 -0.02 -1.41 16 37 H 0.17 -1.80 6.30 -2.91 -0.02 -1.82 16 38 H 0.15 -1.32 4.87 -2.91 -0.01 -1.33 16 39 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 40 H 0.39 -3.08 8.70 -74.06 -0.64 -3.72 16 41 H -0.30 -1.42 7.11 99.48 0.71 -0.71 16 42 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 43 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 44 H 0.13 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 46 H 0.05 -0.20 6.92 -2.38 -0.02 -0.22 16 47 H 0.05 -0.21 7.45 -2.39 -0.02 -0.23 16 48 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 49 H 0.10 0.03 7.39 -2.38 -0.02 0.01 16 Total: 0.00 -29.91 409.80 0.84 -29.07 By element: Atomic # 1 Polarization: -20.83 SS G_CDS: -0.39 Total: -21.22 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.84 Total: 7.99 kcal Atomic # 7 Polarization: 4.21 SS G_CDS: -2.53 Total: 1.67 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -4.12 Total: -16.74 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.04 Total: -0.77 kcal Total: -29.91 0.84 -29.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15102698_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.912 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds