Wall clock time and date at job start Tue Mar 9 2021 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47117 * 2 1 4 4 C 1.50692 * 109.47185 * 239.99912 * 2 1 3 5 5 C 1.31108 * 118.55096 * 119.98011 * 4 2 1 6 6 N 1.38927 * 121.85195 * 179.61748 * 5 4 2 7 7 C 1.47025 * 118.88557 * 13.31201 * 6 5 4 8 8 C 1.50696 * 109.82631 * 196.79655 * 7 6 5 9 9 O 1.21280 * 119.99658 * 18.21092 * 8 7 6 10 10 N 1.34772 * 120.00417 * 198.20350 * 8 7 6 11 11 C 1.46500 * 120.00149 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.85068 * 23.81182 * 11 10 8 13 13 C 1.53777 * 113.61088 * 155.00452 * 11 10 8 14 14 C 1.53781 * 87.08336 * 89.11940 * 13 11 10 15 15 H 1.09002 * 113.61228 * 270.88201 * 14 13 11 16 16 N 1.46500 * 113.61711 * 140.06028 * 14 13 11 17 17 C 1.34946 * 126.03904 * 276.53189 * 16 14 13 18 18 C 1.35317 * 107.74566 * 179.97438 * 17 16 14 19 19 C 1.39869 * 107.92057 * 359.97438 * 18 17 16 20 20 N 1.30835 * 108.20195 * 359.74218 * 19 18 17 21 21 C 1.53775 * 113.61823 * 252.50051 * 11 10 8 22 22 C 1.53542 * 107.65682 * 316.34033 * 7 6 5 23 23 C 1.50204 * 118.54586 * 299.99955 * 4 2 1 24 24 H 0.96701 * 113.99884 * 60.00453 * 1 2 3 25 25 H 1.09005 * 109.47025 * 119.99704 * 2 1 3 26 26 H 1.48499 * 109.99609 * 298.67860 * 3 2 1 27 27 H 1.48498 * 110.00304 * 59.99600 * 3 2 1 28 28 H 1.08007 * 119.07719 * 359.59117 * 5 4 2 29 29 H 0.97007 * 120.55508 * 193.33875 * 6 5 4 30 30 H 1.09000 * 109.87462 * 75.90283 * 7 6 5 31 31 H 0.96999 * 120.00148 * 0.02562 * 10 8 7 32 32 H 1.08997 * 113.61941 * 334.56647 * 13 11 10 33 33 H 1.09005 * 113.61136 * 203.66812 * 13 11 10 34 34 H 1.07999 * 126.12760 * 359.95393 * 17 16 14 35 35 H 1.07994 * 126.03981 * 179.97438 * 18 17 16 36 36 H 1.08004 * 125.89871 * 179.97438 * 19 18 17 37 37 H 1.08993 * 113.61636 * 156.33149 * 21 11 10 38 38 H 1.09008 * 113.61006 * 25.43391 * 21 11 10 39 39 H 1.09001 * 109.62060 * 180.67254 * 22 7 6 40 40 H 1.09009 * 109.62041 * 301.03745 * 22 7 6 41 41 H 1.08997 * 109.33246 * 79.77041 * 23 4 2 42 42 H 1.09002 * 109.19362 * 320.19869 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.6828 -0.0460 -2.0747 6 7 3.1892 -0.6354 -3.2263 7 6 2.6447 -1.9304 -3.6597 8 6 3.5808 -2.5727 -4.6507 9 8 4.7321 -2.1991 -4.7273 10 7 3.1388 -3.5623 -5.4518 11 6 4.0488 -4.1862 -6.4155 12 1 5.0970 -4.0872 -6.1334 13 6 3.6478 -5.6194 -6.8025 14 6 2.8016 -4.9957 -7.9249 15 1 1.7835 -4.7527 -7.6204 16 7 2.8560 -5.7415 -9.1846 17 6 3.8144 -5.6363 -10.1288 18 6 3.5009 -6.4890 -11.1316 19 6 2.3104 -7.1381 -10.7882 20 7 1.9261 -6.6950 -9.6187 21 6 3.7624 -3.7960 -7.8751 22 6 2.5132 -2.8203 -2.4154 23 6 1.5486 -2.1483 -1.4355 24 1 -0.3933 0.4416 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 1.5879 2.4585 -1.2243 27 1 1.5615 2.4680 1.2084 28 1 2.9143 0.9888 -1.8694 29 1 3.8907 -0.1999 -3.7356 30 1 1.6654 -1.7865 -4.1163 31 1 2.2180 -3.8609 -5.3907 32 1 3.0566 -6.1282 -6.0412 33 1 4.4798 -6.2223 -7.1666 34 1 4.6769 -4.9874 -10.0910 35 1 4.0694 -6.6416 -12.0370 36 1 1.7990 -7.8798 -11.3838 37 1 4.6255 -3.9002 -8.5324 38 1 3.2634 -2.8324 -7.9796 39 1 2.1219 -3.7962 -2.7030 40 1 3.4900 -2.9412 -1.9470 41 1 0.5356 -2.1986 -1.8347 42 1 1.5856 -2.6690 -0.4786 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15494482_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:11:04 Heat of formation + Delta-G solvation = 69.824076 kcal Electronic energy + Delta-G solvation = -24554.113579 eV Core-core repulsion = 20924.907455 eV Total energy + Delta-G solvation = -3629.206124 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37161 -41.49552 -40.11801 -39.03595 -37.45476 -34.88296 -33.19450 -33.05736 -31.90310 -30.96029 -27.75174 -26.98592 -25.94122 -25.27963 -23.78506 -22.43212 -22.04834 -21.81195 -20.24719 -19.45194 -19.04373 -18.60179 -17.95776 -17.30431 -16.82954 -16.56076 -16.16152 -16.03233 -15.80171 -15.54730 -15.26675 -15.20612 -15.07672 -14.49954 -14.29871 -14.21822 -14.00518 -13.83962 -13.54480 -13.33839 -13.04447 -12.99091 -12.91277 -12.38846 -12.10464 -11.95942 -11.87425 -11.70430 -11.50807 -11.26963 -10.95681 -10.37595 -10.33093 -10.26919 -9.52358 -8.45553 -4.90158 0.93772 1.28849 1.38051 1.48608 1.57449 1.58358 1.78341 1.92910 1.99183 2.62096 3.05813 3.29230 3.46024 3.56135 3.57688 3.76001 3.79007 3.88218 3.93731 4.03293 4.06060 4.31634 4.34960 4.46132 4.52604 4.53866 4.62683 4.68578 4.72754 4.75453 4.77262 4.78572 4.85836 4.93964 5.03336 5.14253 5.23834 5.30151 5.37169 5.57367 5.73691 6.13743 6.21128 6.39277 6.64716 6.75709 6.83053 7.03640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.055 4.055 3 Si 0.742 3.258 4 C -0.286 4.286 5 C 0.143 3.857 6 N -0.736 5.736 7 C 0.138 3.862 8 C 0.521 3.479 9 O -0.564 6.564 10 N -0.698 5.698 11 C 0.131 3.869 12 H 0.106 0.894 13 C -0.142 4.142 14 C 0.130 3.870 15 H 0.125 0.875 16 N -0.368 5.368 17 C 0.052 3.948 18 C -0.289 4.289 19 C 0.032 3.968 20 N -0.340 5.340 21 C -0.146 4.146 22 C -0.121 4.121 23 C -0.051 4.051 24 H 0.382 0.618 25 H 0.110 0.890 26 H -0.285 1.285 27 H -0.313 1.313 28 H 0.144 0.856 29 H 0.409 0.591 30 H 0.109 0.891 31 H 0.418 0.582 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.201 0.799 35 H 0.163 0.837 36 H 0.198 0.802 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -0.643 -2.392 3.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.166 4.166 3 Si 0.650 3.350 4 C -0.296 4.296 5 C 0.022 3.978 6 N -0.369 5.369 7 C 0.029 3.971 8 C 0.307 3.693 9 O -0.442 6.442 10 N -0.350 5.350 11 C 0.024 3.976 12 H 0.124 0.876 13 C -0.181 4.181 14 C 0.028 3.972 15 H 0.143 0.857 16 N -0.150 5.150 17 C -0.094 4.094 18 C -0.318 4.318 19 C -0.153 4.153 20 N -0.161 5.161 21 C -0.186 4.186 22 C -0.160 4.160 23 C -0.088 4.088 24 H 0.231 0.769 25 H 0.128 0.872 26 H -0.212 1.212 27 H -0.242 1.242 28 H 0.160 0.840 29 H 0.246 0.754 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.218 0.782 35 H 0.180 0.820 36 H 0.215 0.785 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.484 0.013 -0.899 1.735 hybrid contribution -0.732 -0.027 -1.311 1.502 sum 0.752 -0.014 -2.210 2.335 Atomic orbital electron populations 1.86540 1.19551 1.80150 1.50083 1.24844 0.82750 1.09771 0.99207 0.94617 0.90911 0.73603 0.75862 1.20921 1.11709 0.97602 0.99391 1.20487 0.94813 0.96268 0.86221 1.44371 1.43848 1.21038 1.27668 1.21089 0.96233 0.85487 0.94309 1.20798 0.88187 0.79632 0.80689 1.90737 1.20165 1.63294 1.70022 1.45536 1.15396 1.36859 1.37250 1.21536 0.95636 0.92611 0.87806 0.87610 1.23792 1.00611 0.96253 0.97470 1.23209 1.01622 0.92007 0.80351 0.85682 1.48914 1.18091 1.31286 1.16737 1.23010 0.95770 1.00967 0.89646 1.21885 1.01307 1.04878 1.03769 1.24362 0.96762 1.00510 0.93678 1.77303 1.15688 1.07757 1.15388 1.23910 0.99815 0.97568 0.97293 1.21844 1.00976 0.98682 0.94490 1.19908 0.98217 0.91617 0.99046 0.76898 0.87240 1.21162 1.24167 0.83976 0.75447 0.87304 0.74422 0.88738 0.88010 0.78223 0.81989 0.78493 0.86815 0.89276 0.88317 0.91882 0.91252 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.70 12.78 -148.98 -1.90 -3.60 16 2 C -0.06 0.00 2.83 71.23 0.20 0.20 16 3 Si 0.74 -0.65 29.68 68.60 2.04 1.39 16 4 C -0.29 0.39 5.44 -16.75 -0.09 0.30 16 5 C 0.14 -0.33 9.63 83.42 0.80 0.47 16 6 N -0.74 1.59 5.47 -329.01 -1.80 -0.21 16 7 C 0.14 -0.66 3.36 44.33 0.15 -0.51 16 8 C 0.52 -1.28 7.10 87.66 0.62 -0.66 16 9 O -0.56 -3.22 15.66 -3.03 -0.05 -3.27 16 10 N -0.70 5.51 5.26 -440.07 -2.32 3.20 16 11 C 0.13 -0.88 4.32 45.51 0.20 -0.69 16 12 H 0.11 -0.35 7.46 -2.39 -0.02 -0.37 16 13 C -0.14 0.99 7.62 31.12 0.24 1.23 16 14 C 0.13 -0.64 4.90 45.52 0.22 -0.42 16 15 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 16 N -0.37 -0.47 3.81 -324.99 -1.24 -1.71 16 17 C 0.05 -0.06 10.70 83.54 0.89 0.84 16 18 C -0.29 -0.25 10.80 21.99 0.24 -0.02 16 19 C 0.03 0.12 12.03 85.24 1.02 1.14 16 20 N -0.34 -2.34 12.58 -57.02 -0.72 -3.06 16 21 C -0.15 1.10 7.24 31.12 0.23 1.33 16 22 C -0.12 0.58 5.47 30.79 0.17 0.75 16 23 C -0.05 0.13 5.75 29.71 0.17 0.30 16 24 H 0.38 -1.03 8.70 -74.06 -0.64 -1.67 16 25 H 0.11 -0.03 7.96 -2.38 -0.02 -0.05 16 26 H -0.28 -0.71 7.10 99.48 0.71 0.00 16 27 H -0.31 -2.49 7.11 99.48 0.71 -1.79 16 28 H 0.14 -0.71 4.36 -2.91 -0.01 -0.72 16 29 H 0.41 -0.65 8.08 -92.70 -0.75 -1.40 16 30 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.42 -5.44 8.70 -92.71 -0.81 -6.24 16 32 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 34 H 0.20 -1.62 6.70 -2.91 -0.02 -1.64 16 35 H 0.16 -0.50 8.06 -2.91 -0.02 -0.52 16 36 H 0.20 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.11 -1.05 6.33 -2.39 -0.02 -1.06 16 38 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.23 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -21.80 344.33 -2.01 -23.82 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -1.09 Total: -20.82 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.06 Total: 4.27 kcal Atomic # 7 Polarization: 4.29 SS G_CDS: -6.07 Total: -1.78 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -1.95 Total: -6.87 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.04 Total: 1.39 kcal Total: -21.80 -2.01 -23.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15494482_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.639 kcal (2) G-P(sol) polarization free energy of solvation -21.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds