Wall clock time and date at job start Tue Mar 9 2021 20:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86307 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47116 * 119.99527 * 2 1 3 5 5 C 1.34227 * 126.50489 * 254.97686 * 4 2 1 6 6 N 1.36840 * 109.93980 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.06350 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47014 * 265.10820 * 7 6 5 9 9 O 1.21280 * 119.99996 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99766 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.85384 * 23.80201 * 11 10 8 13 13 C 1.53778 * 113.61083 * 154.99824 * 11 10 8 14 14 C 1.53786 * 87.07906 * 139.97699 * 13 11 10 15 15 H 1.09002 * 113.61420 * 219.93164 * 14 13 11 16 16 N 1.46507 * 113.61256 * 89.11476 * 14 13 11 17 17 C 1.34940 * 126.03612 * 274.72056 * 16 14 13 18 18 C 1.35318 * 107.74447 * 179.83844 * 17 16 14 19 19 C 1.39872 * 107.92141 * 0.42190 * 18 17 16 20 20 N 1.30839 * 108.19844 * 359.73613 * 19 18 17 21 21 C 1.53775 * 113.61266 * 252.49655 * 11 10 8 22 22 C 1.37691 * 109.87102 * 0.09750 * 6 5 4 23 23 C 1.39083 * 133.50812 * 179.97438 * 22 6 5 24 24 C 1.37788 * 119.77702 * 179.97438 * 23 22 6 25 25 C 1.38787 * 120.66706 * 359.97438 * 24 23 22 26 26 C 1.36665 * 120.52924 * 0.02562 * 25 24 23 27 27 C 1.39592 * 119.76143 * 359.97438 * 26 25 24 28 28 H 0.96700 * 113.99900 * 59.99939 * 1 2 3 29 29 H 1.08997 * 109.47516 * 240.00221 * 2 1 3 30 30 H 1.48498 * 109.99903 * 298.68073 * 3 2 1 31 31 H 1.48499 * 109.99946 * 59.99630 * 3 2 1 32 32 H 1.08000 * 125.03079 * 0.02562 * 5 4 2 33 33 H 1.09004 * 109.47121 * 25.10256 * 7 6 5 34 34 H 1.08996 * 109.47396 * 145.10825 * 7 6 5 35 35 H 0.96997 * 119.99920 * 359.97438 * 10 8 7 36 36 H 1.08998 * 113.61814 * 254.52613 * 13 11 10 37 37 H 1.09007 * 113.61835 * 25.43272 * 13 11 10 38 38 H 1.07997 * 126.13078 * 359.97438 * 17 16 14 39 39 H 1.08002 * 126.04026 * 180.15437 * 18 17 16 40 40 H 1.07995 * 125.90044 * 179.76125 * 19 18 17 41 41 H 1.09006 * 113.61280 * 334.56756 * 21 11 10 42 42 H 1.08999 * 113.62173 * 105.47151 * 21 11 10 43 43 H 1.07998 * 120.11745 * 359.92516 * 23 22 6 44 44 H 1.08002 * 119.66842 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.73748 * 180.02562 * 25 24 23 46 46 H 1.07997 * 120.12319 * 179.70920 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.4612 -0.1376 2.3227 6 7 2.8025 -1.0989 3.2347 7 6 3.4070 -0.8403 4.5439 8 6 4.9055 -0.9607 4.4380 9 8 5.4180 -1.2350 3.3736 10 7 5.6760 -0.7635 5.5261 11 6 7.1327 -0.8800 5.4229 12 1 7.4998 -0.7165 4.4097 13 6 7.8921 -0.0749 6.4905 14 6 8.8561 -1.2688 6.5923 15 1 9.1648 -1.4950 7.6129 16 7 9.9840 -1.1935 5.6603 17 6 9.9818 -1.6082 4.3762 18 6 11.2085 -1.3615 3.8610 19 6 11.9900 -0.7848 4.8675 20 7 11.2569 -0.6836 5.9465 21 6 7.6980 -2.1459 6.0880 22 6 2.4947 -2.3457 2.7380 23 6 2.6301 -3.6361 3.2388 24 6 2.2171 -4.7108 2.4817 25 6 1.6658 -4.5194 1.2225 26 6 1.5234 -3.2601 0.7110 27 6 1.9352 -2.1570 1.4609 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5879 2.4586 -1.2242 31 1 1.5614 2.4680 1.2084 32 1 2.5972 0.9248 2.4616 33 1 3.1457 0.1657 4.8724 34 1 3.0343 -1.5666 5.2661 35 1 5.2661 -0.5437 6.3772 36 1 8.3587 0.8313 6.1043 37 1 7.3151 0.0990 7.3989 38 1 9.1495 -2.0549 3.8527 39 1 11.5290 -1.5763 2.8523 40 1 13.0204 -0.4761 4.7707 41 1 7.0679 -2.5383 6.8863 42 1 8.0078 -2.9117 5.3770 43 1 3.0583 -3.7955 4.2174 44 1 2.3227 -5.7121 2.8724 45 1 1.3467 -5.3725 0.6421 46 1 1.0979 -3.1191 -0.2715 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15494482_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:11:46 Heat of formation + Delta-G solvation = 125.688018 kcal Electronic energy + Delta-G solvation = -30476.544747 eV Core-core repulsion = 26336.856504 eV Total energy + Delta-G solvation = -4139.688243 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58742 -42.41335 -40.87898 -39.30467 -38.08224 -37.68669 -34.95089 -34.14321 -32.02577 -31.35258 -31.01145 -30.28180 -29.04985 -26.96330 -26.37859 -25.32829 -23.76236 -22.90318 -22.44016 -21.96002 -21.61213 -20.59003 -20.43571 -18.58181 -18.43726 -18.35203 -17.96103 -17.70327 -17.28175 -16.47907 -16.40338 -15.99488 -15.75924 -15.70110 -15.54612 -15.25252 -14.90905 -14.86180 -14.73041 -14.46749 -14.24204 -14.12682 -13.86146 -13.59808 -13.52968 -13.34001 -13.24114 -13.19928 -12.73375 -12.56520 -12.49187 -12.13604 -12.09505 -11.83242 -11.72534 -11.62032 -11.13636 -10.54504 -10.40787 -10.35519 -10.18757 -9.57344 -9.15712 -8.63305 -4.89187 0.14370 0.64503 0.87650 1.32117 1.42110 1.43793 1.48556 1.58898 1.62593 1.88654 1.92332 2.20154 2.94987 3.05619 3.30617 3.50120 3.55407 3.60435 3.72002 3.77973 3.84057 3.85853 3.88347 4.01371 4.02639 4.14601 4.23480 4.27791 4.34265 4.40780 4.48259 4.56686 4.57402 4.67260 4.70849 4.74388 4.79222 4.79912 4.87681 4.89979 4.93248 5.11329 5.14441 5.37450 5.51513 5.66347 5.70479 5.73191 5.75400 6.09443 6.17040 6.24265 6.47159 6.66971 6.70950 7.13196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.052 4.052 3 Si 0.759 3.241 4 C -0.180 4.180 5 C 0.072 3.928 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.565 6.565 10 N -0.699 5.699 11 C 0.122 3.878 12 H 0.091 0.909 13 C -0.138 4.138 14 C 0.124 3.876 15 H 0.124 0.876 16 N -0.362 5.362 17 C 0.051 3.949 18 C -0.287 4.287 19 C 0.037 3.963 20 N -0.332 5.332 21 C -0.143 4.143 22 C 0.092 3.908 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.088 4.088 27 C -0.119 4.119 28 H 0.389 0.611 29 H 0.073 0.927 30 H -0.284 1.284 31 H -0.278 1.278 32 H 0.192 0.808 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.424 0.576 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.203 0.797 41 H 0.137 0.863 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 0.909 5.126 5.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.160 4.160 3 Si 0.662 3.338 4 C -0.188 4.188 5 C -0.053 4.053 6 N -0.149 5.149 7 C -0.038 4.038 8 C 0.280 3.720 9 O -0.442 6.442 10 N -0.352 5.352 11 C 0.016 3.984 12 H 0.109 0.891 13 C -0.177 4.177 14 C 0.021 3.979 15 H 0.142 0.858 16 N -0.145 5.145 17 C -0.096 4.096 18 C -0.316 4.316 19 C -0.149 4.149 20 N -0.153 5.153 21 C -0.182 4.182 22 C -0.013 4.013 23 C -0.152 4.152 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.106 4.106 27 C -0.123 4.123 28 H 0.239 0.761 29 H 0.091 0.909 30 H -0.210 1.210 31 H -0.204 1.204 32 H 0.208 0.792 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.202 0.798 39 H 0.179 0.821 40 H 0.220 0.780 41 H 0.155 0.845 42 H 0.093 0.907 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.286 1.695 6.542 6.764 hybrid contribution -1.042 -0.396 -1.458 1.836 sum -1.328 1.299 5.084 5.413 Atomic orbital electron populations 1.86591 1.19132 1.80678 1.50530 1.24337 0.83394 1.11490 0.96824 0.94127 0.90504 0.71482 0.77671 1.19748 1.09976 0.91547 0.97487 1.21899 0.99920 0.94994 0.88531 1.43403 1.52187 1.03796 1.15496 1.21999 0.88999 1.08897 0.83921 1.21390 0.90386 0.76171 0.84048 1.90803 1.75541 1.48034 1.29818 1.45715 1.05904 1.71130 1.12471 1.22495 0.79879 0.96269 0.99718 0.89057 1.23802 0.96283 0.96825 1.00808 1.22136 0.82804 0.99405 0.93512 0.85815 1.48615 1.09471 1.47114 1.09286 1.22842 1.00476 1.00200 0.86041 1.21871 0.94327 1.12684 1.02701 1.24385 1.01219 0.98743 0.90509 1.77313 0.90807 1.22301 1.24871 1.23922 0.95007 0.97096 1.02223 1.18405 1.01612 0.87026 0.94258 1.20254 1.04642 0.88841 1.01505 1.21151 0.98055 0.99067 0.94301 1.20928 1.02297 0.96943 0.97060 1.20448 0.99067 0.91644 0.99489 1.19360 1.04191 0.93650 0.95100 0.76087 0.90894 1.21029 1.20401 0.79153 0.82401 0.83615 0.73747 0.91497 0.84230 0.79771 0.82073 0.77995 0.84514 0.90717 0.84589 0.83517 0.84457 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.57 12.86 -148.98 -1.92 -5.48 16 2 C -0.05 -0.23 3.05 71.24 0.22 -0.01 16 3 Si 0.76 -0.01 30.79 68.60 2.11 2.10 16 4 C -0.18 -1.41 5.61 -18.63 -0.10 -1.52 16 5 C 0.07 0.26 9.89 83.00 0.82 1.08 16 6 N -0.47 -1.11 2.27 -520.00 -1.18 -2.29 16 7 C 0.09 -0.66 6.48 85.63 0.56 -0.10 16 8 C 0.49 -1.59 7.90 87.66 0.69 -0.90 16 9 O -0.56 -4.52 16.02 -3.03 -0.05 -4.57 16 10 N -0.70 6.89 5.35 -440.04 -2.36 4.53 16 11 C 0.12 -0.75 3.82 45.51 0.17 -0.58 16 12 H 0.09 0.04 6.32 -2.39 -0.02 0.03 16 13 C -0.14 1.08 7.63 31.12 0.24 1.32 16 14 C 0.12 -0.51 5.18 45.52 0.24 -0.28 16 15 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 16 N -0.36 -1.18 3.79 -324.98 -1.23 -2.41 16 17 C 0.05 0.14 9.62 83.54 0.80 0.94 16 18 C -0.29 -1.02 10.80 21.99 0.24 -0.79 16 19 C 0.04 0.18 12.03 85.24 1.03 1.21 16 20 N -0.33 -2.69 12.58 -57.02 -0.72 -3.40 16 21 C -0.14 1.11 7.12 31.12 0.22 1.33 16 22 C 0.09 0.68 6.80 39.03 0.27 0.95 16 23 C -0.13 -0.59 10.00 22.37 0.22 -0.37 16 24 C -0.11 -0.44 10.01 22.29 0.22 -0.22 16 25 C -0.15 -0.93 9.97 22.03 0.22 -0.71 16 26 C -0.09 -0.82 10.05 22.23 0.22 -0.60 16 27 C -0.12 -1.27 6.35 -20.20 -0.13 -1.40 16 28 H 0.39 -0.82 8.74 -74.06 -0.65 -1.47 16 29 H 0.07 0.21 7.96 -2.39 -0.02 0.20 16 30 H -0.28 -1.09 7.11 99.48 0.71 -0.39 16 31 H -0.28 -1.02 7.04 99.48 0.70 -0.32 16 32 H 0.19 -0.46 6.30 -2.91 -0.02 -0.48 16 33 H 0.16 -2.34 8.12 -2.38 -0.02 -2.36 16 34 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 35 H 0.42 -7.47 8.73 -92.71 -0.81 -8.27 16 36 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.14 -2.00 8.12 -2.38 -0.02 -2.02 16 38 H 0.19 -0.15 6.67 -2.91 -0.02 -0.17 16 39 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16 40 H 0.20 -0.18 8.06 -2.91 -0.02 -0.20 16 41 H 0.14 -1.75 8.14 -2.38 -0.02 -1.77 16 42 H 0.07 -0.34 6.96 -2.39 -0.02 -0.36 16 43 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 46 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 Total: 0.00 -32.29 388.97 0.41 -31.88 By element: Atomic # 1 Polarization: -19.33 SS G_CDS: -0.39 Total: -19.72 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.14 Total: -0.63 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -5.49 Total: -3.58 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -1.96 Total: -10.05 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: 2.11 Total: 2.10 kcal Total: -32.29 0.41 -31.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15494482_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.567 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds