Wall clock time and date at job start Tue Mar 9 2021 20:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36774 * 125.80815 * 2 1 4 4 C 1.47270 * 126.93488 * 359.97438 * 3 2 1 5 5 O 1.21620 * 120.00091 * 359.71236 * 4 3 2 6 6 N 1.34771 * 119.99530 * 179.70577 * 4 3 2 7 7 C 1.46499 * 119.99903 * 180.02562 * 6 4 3 8 8 H 1.08997 * 112.90637 * 336.24925 * 7 6 4 9 9 C 1.53779 * 113.61746 * 107.50534 * 7 6 4 10 10 C 1.53779 * 87.08402 * 89.11614 * 9 7 6 11 11 H 1.09002 * 113.61557 * 270.88569 * 10 9 7 12 12 N 1.46497 * 113.61581 * 139.98450 * 10 9 7 13 13 C 1.34947 * 126.03630 * 347.49823 * 12 10 9 14 14 C 1.35319 * 107.74522 * 179.97438 * 13 12 10 15 15 C 1.39864 * 107.92381 * 0.02562 * 14 13 12 16 16 N 1.30840 * 108.19729 * 359.74017 * 15 14 13 17 17 C 1.53784 * 87.08045 * 25.43458 * 10 9 7 18 18 C 1.46683 * 106.11855 * 179.72339 * 3 2 1 19 19 C 1.34482 * 106.33084 * 0.24452 * 18 3 2 20 20 C 1.50704 * 125.56718 * 180.02562 * 19 18 3 21 21 O 1.42902 * 109.47258 * 299.99475 * 20 19 18 22 22 Si 1.86303 * 109.46917 * 179.97438 * 20 19 18 23 23 N 1.34665 * 125.80021 * 180.13554 * 2 1 3 24 24 H 1.08999 * 109.47070 * 89.99631 * 1 2 3 25 25 H 1.08993 * 109.47176 * 209.99683 * 1 2 3 26 26 H 1.09005 * 109.46804 * 330.00392 * 1 2 3 27 27 H 0.97001 * 120.00748 * 0.02562 * 6 4 3 28 28 H 1.09006 * 113.61280 * 203.66438 * 9 7 6 29 29 H 1.08999 * 113.61062 * 334.48192 * 9 7 6 30 30 H 1.08004 * 126.12748 * 0.02562 * 13 12 10 31 31 H 1.08004 * 126.03836 * 180.02562 * 14 13 12 32 32 H 1.07992 * 125.90208 * 179.97438 * 15 14 13 33 33 H 1.09004 * 113.61451 * 220.02152 * 17 10 9 34 34 H 1.08994 * 113.61477 * 89.11454 * 17 10 9 35 35 H 1.07995 * 126.83180 * 180.25989 * 18 3 2 36 36 H 1.08991 * 109.47592 * 59.99918 * 20 19 18 37 37 H 0.96700 * 113.99664 * 300.00581 * 21 20 19 38 38 H 1.48497 * 109.99880 * 179.97438 * 22 20 19 39 39 H 1.48505 * 109.99941 * 301.31256 * 22 20 19 40 40 H 0.96993 * 124.85067 * 0.06939 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6841 2.7839 -0.0063 6 7 2.7851 3.5053 0.0055 7 6 2.3506 4.9044 0.0056 8 1 1.3491 5.0376 -0.4035 9 6 2.5659 5.6163 1.3515 10 6 3.9650 5.9953 0.8378 11 1 4.7297 5.2526 1.0653 12 7 4.3706 7.3580 1.1910 13 6 3.5662 8.3235 1.6826 14 6 4.3207 9.4300 1.8761 15 6 5.6309 9.1307 1.4890 16 7 5.6631 7.8872 1.0831 17 6 3.3903 5.8724 -0.5833 18 6 3.6882 0.6150 0.0068 19 6 3.6095 -0.7275 0.0048 20 6 4.7819 -1.6744 0.0105 21 8 5.5824 -1.4484 -1.1515 22 14 4.1613 -3.4310 0.0056 23 7 2.2947 -1.0922 -0.0026 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8901 0.5138 27 1 3.7312 3.2914 0.0099 28 1 1.9092 6.4732 1.5022 29 1 2.5815 4.9396 2.2058 30 1 2.5096 8.2297 1.8860 31 1 3.9726 10.3771 2.2613 32 1 6.4717 9.8076 1.5231 33 1 4.0729 5.4022 -1.2912 34 1 2.9590 6.7992 -0.9615 35 1 4.5890 1.2107 0.0126 36 1 5.3822 -1.5040 0.9040 37 1 5.1116 -1.5820 -1.9855 38 1 5.3079 -4.3747 0.0105 39 1 3.3018 -3.6693 1.1929 40 1 1.9733 -2.0073 -0.0057 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15494482_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:11:50 Heat of formation + Delta-G solvation = 91.833600 kcal Electronic energy + Delta-G solvation = -24017.335507 eV Core-core repulsion = 20416.395266 eV Total energy + Delta-G solvation = -3600.940241 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.58419 -42.24070 -40.73943 -38.98215 -37.85735 -34.63875 -32.86920 -32.49943 -31.56970 -30.86863 -29.01819 -27.04792 -26.44491 -25.38614 -23.65798 -22.14081 -21.89935 -21.58555 -20.77945 -20.09203 -18.81016 -18.53542 -17.71343 -17.18607 -16.85247 -16.63892 -16.26270 -15.88485 -15.52759 -15.38423 -15.18314 -14.99394 -14.67067 -14.57793 -14.22567 -14.16587 -13.90759 -13.89712 -13.54583 -13.46104 -13.31057 -13.00805 -12.76740 -12.65164 -12.31651 -12.09074 -11.84699 -11.43363 -10.91680 -10.59629 -10.26192 -10.16244 -9.91120 -9.43993 -9.21263 -5.36716 0.69539 0.95894 1.02713 1.16404 1.32411 1.59694 1.67832 1.89155 2.03436 2.26627 2.53640 3.02880 3.23437 3.27339 3.53697 3.56333 3.70595 3.76472 3.90789 4.01775 4.07193 4.13235 4.29901 4.33551 4.42636 4.43013 4.55181 4.63733 4.65857 4.69497 4.72042 4.78258 4.83121 4.95729 4.96805 5.18781 5.19337 5.49621 5.64079 5.79340 5.81756 6.14784 6.24928 6.38105 6.56173 6.87286 7.35480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.127 3.873 3 C -0.244 4.244 4 C 0.599 3.401 5 O -0.544 6.544 6 N -0.713 5.713 7 C 0.131 3.869 8 H 0.117 0.883 9 C -0.157 4.157 10 C 0.137 3.863 11 H 0.120 0.880 12 N -0.363 5.363 13 C 0.053 3.947 14 C -0.274 4.274 15 C 0.044 3.956 16 N -0.298 5.298 17 C -0.153 4.153 18 C -0.128 4.128 19 C -0.028 4.028 20 C -0.033 4.033 21 O -0.533 6.533 22 Si 0.672 3.328 23 N -0.545 5.545 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.402 0.598 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.183 0.817 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.381 0.619 38 H -0.243 1.243 39 H -0.252 1.252 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 -3.129 -1.400 4.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.008 3.992 3 C -0.253 4.253 4 C 0.389 3.611 5 O -0.422 6.422 6 N -0.364 5.364 7 C 0.025 3.975 8 H 0.135 0.865 9 C -0.197 4.197 10 C 0.034 3.966 11 H 0.138 0.862 12 N -0.145 5.145 13 C -0.093 4.093 14 C -0.304 4.304 15 C -0.142 4.142 16 N -0.119 5.119 17 C -0.192 4.192 18 C -0.153 4.153 19 C -0.136 4.136 20 C -0.146 4.146 21 O -0.338 6.338 22 Si 0.573 3.427 23 N -0.144 5.144 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.237 0.763 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.190 0.810 31 H 0.165 0.835 32 H 0.200 0.800 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.229 0.771 38 H -0.167 1.167 39 H -0.177 1.177 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.858 -4.818 -1.031 5.265 hybrid contribution 0.207 0.718 0.758 1.065 sum -1.650 -4.100 -0.273 4.428 Atomic orbital electron populations 1.20664 0.86480 1.04600 1.03993 1.20413 0.93804 0.85241 0.99747 1.20032 0.93101 0.91815 1.20371 1.17303 0.85131 0.83971 0.74700 1.90760 1.16519 1.84289 1.50664 1.45457 1.09952 1.04652 1.76373 1.21553 1.00028 0.80301 0.95652 0.86460 1.23953 0.94517 1.01630 0.99597 1.22997 0.96676 0.80272 0.96609 0.86205 1.48719 1.06039 1.10274 1.49439 1.22496 0.98159 0.89154 0.99504 1.21560 0.93809 1.00524 1.14462 1.23942 0.98240 0.93604 0.98419 1.77379 0.98957 1.11342 1.24218 1.23872 0.98349 1.00552 0.96397 1.21786 0.95615 0.92640 1.05216 1.20547 0.84374 0.95731 1.12956 1.24413 0.91615 1.06535 0.91997 1.86551 1.38912 1.92987 1.15344 0.95397 0.84188 0.75619 0.87486 1.41727 1.05561 1.08495 1.58636 0.89843 0.91452 0.87800 0.76283 0.87879 0.89308 0.81036 0.83457 0.80023 0.89389 0.87816 0.83552 0.85739 0.77134 1.16692 1.17680 0.74698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.09 9.88 36.00 0.36 0.45 16 2 C 0.13 0.01 7.17 -81.88 -0.59 -0.57 16 3 C -0.24 -0.28 6.29 -103.35 -0.65 -0.93 16 4 C 0.60 1.26 7.81 -12.59 -0.10 1.16 16 5 O -0.54 -2.65 14.42 5.26 0.08 -2.57 16 6 N -0.71 0.41 5.26 -54.14 -0.28 0.13 16 7 C 0.13 -0.14 4.32 -67.12 -0.29 -0.43 16 8 H 0.12 0.01 7.46 -51.93 -0.39 -0.38 16 9 C -0.16 0.25 7.23 -25.92 -0.19 0.06 16 10 C 0.14 -0.08 4.91 -67.12 -0.33 -0.40 16 11 H 0.12 -0.10 8.14 -51.93 -0.42 -0.52 16 12 N -0.36 -0.72 3.81 -54.07 -0.21 -0.93 16 13 C 0.05 0.04 10.69 -17.22 -0.18 -0.14 16 14 C -0.27 -0.39 10.80 -40.01 -0.43 -0.82 16 15 C 0.04 0.11 12.03 -17.37 -0.21 -0.10 16 16 N -0.30 -1.28 12.58 30.62 0.39 -0.89 16 17 C -0.15 0.22 7.63 -25.91 -0.20 0.03 16 18 C -0.13 0.02 10.43 -37.50 -0.39 -0.37 16 19 C -0.03 0.03 6.11 -81.87 -0.50 -0.47 16 20 C -0.03 0.06 2.98 36.01 0.11 0.17 16 21 O -0.53 0.72 12.87 -35.23 -0.45 0.26 16 22 Si 0.67 -2.03 30.94 -169.99 -5.26 -7.29 16 23 N -0.54 0.97 5.41 -5.42 -0.03 0.94 16 24 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 25 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.10 0.11 6.47 -51.93 -0.34 -0.23 16 27 H 0.40 -0.94 7.82 -40.82 -0.32 -1.26 16 28 H 0.10 -0.26 6.32 -51.93 -0.33 -0.59 16 29 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.17 -0.38 6.69 -52.48 -0.35 -0.73 16 31 H 0.15 -0.07 8.06 -52.48 -0.42 -0.50 16 32 H 0.18 -0.05 8.06 -52.49 -0.42 -0.47 16 33 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 34 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.15 -0.21 7.69 -52.49 -0.40 -0.61 16 36 H 0.13 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.38 -1.89 8.70 45.56 0.40 -1.49 16 38 H -0.24 -0.12 7.11 56.52 0.40 0.28 16 39 H -0.25 0.23 7.11 56.52 0.40 0.63 16 40 H 0.41 -1.75 6.70 -40.82 -0.27 -2.03 16 LS Contribution 338.55 15.07 5.10 5.10 Total: 0.00 -9.66 338.55 -9.26 -18.92 By element: Atomic # 1 Polarization: -6.31 SS G_CDS: -5.00 Total: -11.30 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.59 Total: -2.37 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -0.13 Total: -0.74 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: -0.38 Total: -2.31 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: -5.26 Total: -7.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -9.66 -9.26 -18.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15494482_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.754 kcal (2) G-P(sol) polarization free energy of solvation -9.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds