Wall clock time and date at job start Tue Mar 9 2021 20:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47377 * 2 1 4 4 C 1.50693 * 109.47214 * 240.00138 * 2 1 3 5 5 C 1.30767 * 118.29238 * 119.97747 * 4 2 1 6 6 N 1.38931 * 121.74983 * 179.68800 * 5 4 2 7 7 C 1.47027 * 118.88383 * 13.28821 * 6 5 4 8 8 C 1.50705 * 109.81938 * 196.79157 * 7 6 5 9 9 O 1.21279 * 119.99848 * 18.20479 * 8 7 6 10 10 N 1.34774 * 119.99676 * 198.20431 * 8 7 6 11 11 C 1.46501 * 119.99594 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.85360 * 334.66530 * 11 10 8 13 13 C 1.53787 * 113.61459 * 105.86586 * 11 10 8 14 14 C 1.54050 * 86.98723 * 89.15716 * 13 11 10 15 15 H 1.09000 * 113.61689 * 270.88366 * 14 13 11 16 16 N 1.46497 * 113.69479 * 139.98988 * 14 13 11 17 17 C 1.34434 * 126.82509 * 347.17765 * 16 14 13 18 18 N 1.30826 * 108.08190 * 179.89407 * 17 16 14 19 19 C 1.33240 * 109.82721 * 0.38209 * 18 17 16 20 20 N 1.30719 * 108.94512 * 359.76303 * 19 18 17 21 21 C 1.53780 * 87.07875 * 25.43319 * 14 13 11 22 22 C 1.53546 * 107.65446 * 316.33024 * 7 6 5 23 23 C 1.50208 * 118.54770 * 300.00316 * 4 2 1 24 24 H 0.96699 * 113.99672 * 59.99150 * 1 2 3 25 25 H 1.08997 * 109.47273 * 120.00293 * 2 1 3 26 26 H 1.48493 * 110.00044 * 298.68322 * 3 2 1 27 27 H 1.48506 * 109.99536 * 59.99937 * 3 2 1 28 28 H 1.07996 * 119.17862 * 359.65725 * 5 4 2 29 29 H 0.97001 * 120.55852 * 193.29416 * 6 5 4 30 30 H 1.08994 * 109.82541 * 75.86761 * 7 6 5 31 31 H 0.97001 * 120.00545 * 359.97438 * 10 8 7 32 32 H 1.08993 * 113.61428 * 203.66429 * 13 11 10 33 33 H 1.09004 * 113.61307 * 334.56173 * 13 11 10 34 34 H 1.08007 * 125.95754 * 0.03866 * 17 16 14 35 35 H 1.08004 * 125.53124 * 179.80167 * 19 18 17 36 36 H 1.09003 * 113.61534 * 220.02656 * 21 14 13 37 37 H 1.09000 * 113.69404 * 89.12445 * 21 14 13 38 38 H 1.09001 * 109.61905 * 301.22575 * 22 7 6 39 39 H 1.09002 * 109.77376 * 180.77221 * 22 7 6 40 40 H 1.09002 * 109.33122 * 79.76671 * 23 4 2 41 41 H 1.08996 * 109.32461 * 320.11793 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.6804 -0.0428 -2.0691 6 7 3.1874 -0.6285 -3.2224 7 6 2.6440 -1.9229 -3.6594 8 6 3.5808 -2.5613 -4.6524 9 8 4.7317 -2.1862 -4.7281 10 7 3.1397 -3.5491 -5.4562 11 6 4.0505 -4.1701 -6.4210 12 1 4.8686 -3.5124 -6.7148 13 6 4.5094 -5.5807 -6.0153 14 6 3.2710 -6.1103 -6.7628 15 1 2.3802 -6.1787 -6.1384 16 7 3.5240 -7.3332 -7.5288 17 6 4.7227 -7.8647 -7.8253 18 7 4.5227 -8.9552 -8.5199 19 6 3.2156 -9.1473 -8.6933 20 7 2.5628 -8.1799 -8.1045 21 6 3.3321 -4.8288 -7.6106 22 6 2.5137 -2.8165 -2.4176 23 6 1.5486 -2.1483 -1.4357 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5880 2.4586 -1.2241 27 1 1.5615 2.4679 1.2086 28 1 2.9111 0.9914 -1.8607 29 1 3.8882 -0.1909 -3.7306 30 1 1.6644 -1.7778 -4.1148 31 1 2.2193 -3.8493 -5.3954 32 1 5.4543 -5.8797 -6.4690 33 1 4.4806 -5.7568 -4.9400 34 1 5.6832 -7.4629 -7.5381 35 1 2.7681 -9.9692 -9.2323 36 1 2.3534 -4.3982 -7.8223 37 1 3.9553 -4.9213 -8.5001 38 1 3.4901 -2.9349 -1.9478 39 1 2.1251 -3.7934 -2.7053 40 1 0.5355 -2.1985 -1.8349 41 1 1.5862 -2.6715 -0.4803 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15494484_15413834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:12:16 Heat of formation + Delta-G solvation = 83.711820 kcal Electronic energy + Delta-G solvation = -24722.074729 eV Core-core repulsion = 21028.044912 eV Total energy + Delta-G solvation = -3694.029817 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14488 -41.62865 -40.26169 -39.11096 -37.45442 -35.05531 -33.35779 -33.18279 -32.54750 -32.01129 -27.80649 -27.03246 -26.27735 -25.32651 -23.84725 -23.01815 -22.90721 -21.95667 -20.57128 -19.44786 -19.04494 -18.63717 -17.92681 -17.31366 -16.89494 -16.64924 -16.47830 -16.11994 -16.02797 -15.75862 -15.49199 -15.22675 -15.17555 -14.86574 -14.43806 -14.18017 -13.98521 -13.82912 -13.64050 -13.39926 -12.99029 -12.91018 -12.87314 -12.38376 -12.27480 -11.95362 -11.70182 -11.67841 -11.26632 -11.05099 -10.93773 -10.85254 -10.59039 -10.32427 -10.26227 -8.45618 -4.90146 0.62100 1.30214 1.34328 1.39285 1.49701 1.57473 1.79868 1.96495 1.99380 2.63704 2.99170 3.25382 3.43937 3.48104 3.54006 3.58925 3.75235 3.80087 3.88546 3.92695 4.05046 4.14676 4.32813 4.38633 4.47142 4.53148 4.61369 4.64440 4.72788 4.73338 4.77909 4.80969 4.85559 5.04004 5.24157 5.26449 5.31209 5.40878 5.42977 5.58527 5.87011 6.22514 6.40826 6.64862 6.84112 7.05694 7.08813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.056 4.056 3 Si 0.742 3.258 4 C -0.285 4.285 5 C 0.143 3.857 6 N -0.737 5.737 7 C 0.137 3.863 8 C 0.521 3.479 9 O -0.563 6.563 10 N -0.699 5.699 11 C 0.130 3.870 12 H 0.108 0.892 13 C -0.146 4.146 14 C 0.126 3.874 15 H 0.132 0.868 16 N -0.370 5.370 17 C 0.256 3.744 18 N -0.580 5.580 19 C 0.189 3.811 20 N -0.351 5.351 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.051 4.051 24 H 0.382 0.618 25 H 0.110 0.890 26 H -0.285 1.285 27 H -0.313 1.313 28 H 0.143 0.857 29 H 0.409 0.591 30 H 0.109 0.891 31 H 0.419 0.581 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.235 0.765 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 0.796 -0.943 1.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.166 4.166 3 Si 0.650 3.350 4 C -0.296 4.296 5 C 0.022 3.978 6 N -0.370 5.370 7 C 0.028 3.972 8 C 0.307 3.693 9 O -0.441 6.441 10 N -0.351 5.351 11 C 0.024 3.976 12 H 0.126 0.874 13 C -0.186 4.186 14 C 0.024 3.976 15 H 0.150 0.850 16 N -0.160 5.160 17 C -0.040 4.040 18 N -0.308 5.308 19 C -0.114 4.114 20 N -0.179 5.179 21 C -0.179 4.179 22 C -0.159 4.159 23 C -0.088 4.088 24 H 0.231 0.769 25 H 0.127 0.873 26 H -0.212 1.212 27 H -0.242 1.242 28 H 0.159 0.841 29 H 0.245 0.755 30 H 0.126 0.874 31 H 0.256 0.744 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.267 0.733 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.693 1.369 -0.567 1.636 hybrid contribution -1.223 0.048 -0.503 1.323 sum -0.530 1.418 -1.069 1.853 Atomic orbital electron populations 1.86540 1.19555 1.80126 1.50105 1.24859 0.82760 1.09717 0.99296 0.94622 0.90926 0.73665 0.75828 1.20837 1.11654 0.97663 0.99398 1.20396 0.94817 0.96280 0.86262 1.44380 1.43936 1.21171 1.27528 1.21096 0.96282 0.85486 0.94307 1.20765 0.88167 0.79420 0.80907 1.90742 1.20190 1.63454 1.69726 1.45537 1.15411 1.36910 1.37237 1.21550 0.93698 0.93547 0.88825 0.87411 1.23997 0.97531 0.94586 1.02438 1.23481 1.02084 0.78626 0.93411 0.85013 1.50713 1.04411 1.20815 1.40058 1.26661 0.93592 0.90248 0.93526 1.70591 1.18673 1.18994 1.22567 1.26530 0.88056 0.98436 0.98362 1.77994 1.16081 1.05915 1.17862 1.23780 1.03392 0.93136 0.97631 1.21840 1.00968 0.98664 0.94464 1.19910 0.98271 0.91544 0.99081 0.76899 0.87257 1.21191 1.24223 0.84059 0.75473 0.87362 0.74381 0.86356 0.88777 0.73284 0.74885 0.88609 0.87791 0.91835 0.88203 0.91271 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.45 12.78 -148.98 -1.90 -3.36 16 2 C -0.06 0.03 2.83 71.23 0.20 0.23 16 3 Si 0.74 -0.90 29.67 68.60 2.04 1.13 16 4 C -0.29 0.58 5.44 -16.41 -0.09 0.49 16 5 C 0.14 -0.42 9.61 83.77 0.80 0.38 16 6 N -0.74 2.21 5.47 -329.26 -1.80 0.41 16 7 C 0.14 -0.82 3.36 44.33 0.15 -0.67 16 8 C 0.52 -2.13 7.10 87.66 0.62 -1.51 16 9 O -0.56 -2.34 15.68 -3.03 -0.05 -2.39 16 10 N -0.70 7.00 5.26 -440.01 -2.32 4.69 16 11 C 0.13 -1.23 4.30 45.52 0.20 -1.03 16 12 H 0.11 -0.65 7.50 -2.39 -0.02 -0.66 16 13 C -0.15 1.57 7.27 31.21 0.23 1.79 16 14 C 0.13 -1.03 4.96 45.61 0.23 -0.80 16 15 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 16 N -0.37 0.39 3.83 -328.50 -1.26 -0.87 16 17 C 0.26 -0.33 11.87 180.36 2.14 1.81 16 18 N -0.58 -3.02 11.19 -203.99 -2.28 -5.30 16 19 C 0.19 0.80 13.03 180.76 2.36 3.16 16 20 N -0.35 -1.77 12.70 -61.24 -0.78 -2.54 16 21 C -0.14 1.38 7.62 31.12 0.24 1.62 16 22 C -0.12 0.74 5.47 30.79 0.17 0.91 16 23 C -0.05 0.18 5.76 29.70 0.17 0.35 16 24 H 0.38 -1.19 8.70 -74.06 -0.64 -1.84 16 25 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 26 H -0.28 -0.62 7.10 99.48 0.71 0.09 16 27 H -0.31 -2.42 7.11 99.48 0.71 -1.71 16 28 H 0.14 -0.77 4.32 -2.91 -0.01 -0.78 16 29 H 0.41 -0.96 8.08 -92.71 -0.75 -1.71 16 30 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.42 -6.34 8.70 -92.71 -0.81 -7.15 16 32 H 0.12 -1.55 6.40 -2.39 -0.02 -1.57 16 33 H 0.09 -0.96 8.14 -2.39 -0.02 -0.97 16 34 H 0.25 -2.59 6.76 -2.91 -0.02 -2.61 16 35 H 0.24 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.10 -1.06 8.14 -2.39 -0.02 -1.07 16 40 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -24.92 339.15 -2.01 -26.93 By element: Atomic # 1 Polarization: -24.36 SS G_CDS: -1.07 Total: -25.43 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 7.41 Total: 6.73 kcal Atomic # 7 Polarization: 4.81 SS G_CDS: -8.43 Total: -3.63 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -1.95 Total: -5.75 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: 2.04 Total: 1.13 kcal Total: -24.92 -2.01 -26.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15494484_15413834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.645 kcal (2) G-P(sol) polarization free energy of solvation -24.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds