Wall clock time and date at job start Tue Mar 9 2021 20:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47217 * 2 1 4 4 C 1.50698 * 109.47396 * 239.99572 * 2 1 3 5 5 C 1.34235 * 126.49887 * 105.26964 * 4 2 1 6 6 N 1.36836 * 109.93787 * 180.21023 * 5 4 2 7 7 C 1.46495 * 125.06641 * 179.81862 * 6 5 4 8 8 C 1.50703 * 109.46948 * 264.69565 * 7 6 5 9 9 O 1.21278 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99755 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99531 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.85385 * 23.80181 * 11 10 8 13 13 C 1.53781 * 113.61225 * 155.00207 * 11 10 8 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 11 10 15 15 H 1.09000 * 113.61138 * 220.06261 * 14 13 11 16 16 N 1.46496 * 113.61518 * 89.15486 * 14 13 11 17 17 C 1.34427 * 126.82694 * 275.00301 * 16 14 13 18 18 N 1.30830 * 108.07554 * 179.97438 * 17 16 14 19 19 C 1.33240 * 109.83337 * 0.02562 * 18 17 16 20 20 N 1.30715 * 108.94268 * 359.75005 * 19 18 17 21 21 C 1.53782 * 113.61191 * 252.49880 * 11 10 8 22 22 C 1.37691 * 109.87220 * 359.55013 * 6 5 4 23 23 C 1.39087 * 133.51291 * 180.28650 * 22 6 5 24 24 C 1.37795 * 119.77676 * 179.97438 * 23 22 6 25 25 C 1.38786 * 120.66855 * 359.97438 * 24 23 22 26 26 C 1.36663 * 120.52591 * 0.03596 * 25 24 23 27 27 C 1.39593 * 119.76591 * 359.95882 * 26 25 24 28 28 H 0.96696 * 113.99664 * 60.00044 * 1 2 3 29 29 H 1.09006 * 109.47022 * 119.99884 * 2 1 3 30 30 H 1.48502 * 109.99829 * 298.67804 * 3 2 1 31 31 H 1.48497 * 110.00305 * 59.99655 * 3 2 1 32 32 H 1.07999 * 125.03201 * 0.04548 * 5 4 2 33 33 H 1.08994 * 109.47717 * 144.69104 * 7 6 5 34 34 H 1.09007 * 109.46949 * 24.69029 * 7 6 5 35 35 H 0.96997 * 119.99692 * 0.02562 * 10 8 7 36 36 H 1.09002 * 113.61445 * 254.52836 * 13 11 10 37 37 H 1.09002 * 113.61408 * 25.34566 * 13 11 10 38 38 H 1.08000 * 125.95491 * 359.97438 * 17 16 14 39 39 H 1.07997 * 125.52608 * 180.02562 * 19 18 17 40 40 H 1.08997 * 113.61668 * 334.56642 * 21 11 10 41 41 H 1.08998 * 113.61674 * 105.39151 * 21 11 10 42 42 H 1.07995 * 120.11387 * 359.95810 * 23 22 6 43 43 H 1.08000 * 119.66454 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.73853 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.11762 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.4656 -0.1381 -2.3208 6 7 2.8017 -1.0991 -3.2351 7 6 3.4056 -0.8405 -4.5444 8 6 2.3253 -0.7842 -5.5936 9 8 1.1651 -0.9438 -5.2785 10 7 2.6484 -0.5554 -6.8820 11 6 1.5981 -0.5001 -7.9018 12 1 0.6215 -0.2454 -7.4902 13 6 1.9820 0.3315 -9.1370 14 6 1.2884 -0.7479 -9.9849 15 1 1.8203 -0.9887 -10.9053 16 7 -0.1390 -0.4979 -10.1997 17 6 -1.1483 -0.8327 -9.3773 18 7 -2.2678 -0.4363 -9.9263 19 6 -2.0147 0.1524 -11.0945 20 7 -0.7244 0.1435 -11.3035 21 6 1.5765 -1.7254 -8.8308 22 6 2.4932 -2.3457 -2.7386 23 6 2.6284 -3.6363 -3.2393 24 6 2.2156 -4.7109 -2.4820 25 6 1.6656 -4.5195 -1.2222 26 6 1.5233 -3.2602 -0.7109 27 6 1.9350 -2.1571 -1.4609 28 1 -0.3932 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5880 2.4584 -1.2243 31 1 1.5615 2.4679 1.2084 32 1 2.6065 0.9239 -2.4574 33 1 4.1055 -1.6403 -4.7861 34 1 3.9365 0.1112 -4.5181 35 1 3.5763 -0.4274 -7.1339 36 1 1.4899 1.3032 -9.1794 37 1 3.0573 0.3940 -9.3043 38 1 -1.0518 -1.3403 -8.4290 39 1 -2.7552 0.5731 -11.7587 40 1 2.5408 -2.2264 -8.9153 41 1 0.7578 -2.4150 -8.6252 42 1 3.0552 -3.7956 -4.2185 43 1 2.3210 -5.7122 -2.8728 44 1 1.3474 -5.3726 -0.6413 45 1 1.0949 -3.1189 0.2704 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15494484_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:12:58 Heat of formation + Delta-G solvation = 136.663157 kcal Electronic energy + Delta-G solvation = -30682.342082 eV Core-core repulsion = 26477.703845 eV Total energy + Delta-G solvation = -4204.638237 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.31414 -42.52379 -41.10278 -39.53852 -38.14764 -37.68506 -35.14168 -34.08194 -32.92825 -32.12771 -31.37608 -30.23016 -29.05193 -27.05808 -26.65754 -25.55372 -23.83058 -23.39029 -22.97348 -22.53542 -21.73251 -21.00707 -20.63207 -18.72909 -18.45472 -18.18047 -17.81590 -17.52360 -17.15682 -16.64634 -16.40026 -16.29040 -16.14767 -16.07401 -15.70091 -15.58993 -15.28725 -14.91766 -14.77735 -14.68837 -14.40144 -14.10242 -14.01855 -13.65714 -13.57870 -13.39282 -13.17342 -13.04859 -12.72499 -12.55964 -12.39472 -12.32783 -12.00229 -11.79663 -11.73954 -11.18930 -11.13220 -10.94552 -10.69025 -10.53447 -10.46052 -10.21931 -9.14581 -8.62064 -4.90508 0.15534 0.49411 0.65386 1.19357 1.34397 1.42292 1.42817 1.60552 1.70914 1.86178 1.99658 2.19343 2.94259 2.96483 3.21749 3.33529 3.47081 3.50558 3.62118 3.70299 3.74603 3.78505 3.82381 3.86436 4.05282 4.06867 4.19035 4.23672 4.27662 4.32319 4.50559 4.54501 4.56776 4.59994 4.64089 4.72910 4.77050 4.80424 4.88007 4.91423 5.15302 5.18956 5.31760 5.37585 5.52380 5.67989 5.74773 5.76355 5.77331 6.19340 6.24902 6.46476 6.53612 6.98244 7.12422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.787 3.213 4 C -0.216 4.216 5 C 0.074 3.926 6 N -0.465 5.465 7 C 0.086 3.914 8 C 0.492 3.508 9 O -0.572 6.572 10 N -0.697 5.697 11 C 0.117 3.883 12 H 0.087 0.913 13 C -0.135 4.135 14 C 0.119 3.881 15 H 0.134 0.866 16 N -0.363 5.363 17 C 0.254 3.746 18 N -0.578 5.578 19 C 0.191 3.809 20 N -0.341 5.341 21 C -0.141 4.141 22 C 0.093 3.907 23 C -0.131 4.131 24 C -0.108 4.108 25 C -0.155 4.155 26 C -0.090 4.090 27 C -0.117 4.117 28 H 0.381 0.619 29 H 0.109 0.891 30 H -0.274 1.274 31 H -0.305 1.305 32 H 0.196 0.804 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.426 0.574 36 H 0.065 0.935 37 H 0.146 0.854 38 H 0.233 0.767 39 H 0.240 0.760 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 0.457 -3.788 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.690 3.310 4 C -0.224 4.224 5 C -0.051 4.051 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.277 3.723 9 O -0.450 6.450 10 N -0.350 5.350 11 C 0.011 3.989 12 H 0.105 0.895 13 C -0.174 4.174 14 C 0.016 3.984 15 H 0.152 0.848 16 N -0.153 5.153 17 C -0.042 4.042 18 N -0.306 5.306 19 C -0.111 4.111 20 N -0.169 5.169 21 C -0.180 4.180 22 C -0.012 4.012 23 C -0.151 4.151 24 C -0.127 4.127 25 C -0.174 4.174 26 C -0.108 4.108 27 C -0.121 4.121 28 H 0.229 0.771 29 H 0.127 0.873 30 H -0.200 1.200 31 H -0.233 1.233 32 H 0.213 0.787 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.249 0.751 39 H 0.256 0.744 40 H 0.162 0.838 41 H 0.096 0.904 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.745 1.194 -3.814 12.406 hybrid contribution -1.422 -0.301 -0.324 1.489 sum 10.323 0.893 -4.138 11.157 Atomic orbital electron populations 1.86558 1.19589 1.80560 1.49660 1.24715 0.82499 1.12032 0.97233 0.94224 0.89534 0.70494 0.76710 1.20693 1.10882 0.91962 0.98819 1.21996 0.99546 0.95083 0.88512 1.43411 1.53388 1.03713 1.14269 1.22036 0.93761 1.09437 0.78554 1.21551 0.90496 0.75657 0.84548 1.90816 1.22481 1.49913 1.81755 1.45678 1.11466 1.72264 1.05630 1.22523 0.92820 0.96713 0.86862 0.89451 1.23798 1.04057 0.97302 0.92232 1.22372 0.75406 0.99219 1.01364 0.84791 1.50449 1.08395 1.42264 1.14230 1.26363 0.82700 0.96918 0.98250 1.70595 1.28810 1.20432 1.10776 1.26604 0.92817 0.97385 0.94329 1.78007 1.10393 1.19968 1.08508 1.23993 1.05905 0.96618 0.91488 1.18383 1.01707 0.87039 0.94070 1.20251 1.04873 0.88905 1.01097 1.21137 0.98178 0.99144 0.94222 1.20913 1.02370 0.96953 0.97121 1.20444 0.99052 0.91798 0.99537 1.19339 1.03885 0.93710 0.95179 0.77061 0.87300 1.20020 1.23342 0.78714 0.83291 0.81789 0.73488 0.91608 0.83588 0.75077 0.74384 0.83821 0.90426 0.84502 0.83681 0.84800 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.65 12.88 -148.98 -1.92 -6.57 16 2 C -0.06 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.79 -1.15 30.81 68.60 2.11 0.96 16 4 C -0.22 -1.01 5.58 -18.63 -0.10 -1.12 16 5 C 0.07 -0.01 9.89 83.00 0.82 0.81 16 6 N -0.47 0.34 2.27 -520.00 -1.18 -0.83 16 7 C 0.09 -0.92 6.48 85.63 0.56 -0.37 16 8 C 0.49 -2.47 7.90 87.66 0.69 -1.78 16 9 O -0.57 -4.22 16.02 -3.02 -0.05 -4.27 16 10 N -0.70 8.51 5.35 -440.03 -2.36 6.16 16 11 C 0.12 -0.99 3.83 45.52 0.17 -0.82 16 12 H 0.09 -0.12 6.37 -2.39 -0.02 -0.13 16 13 C -0.13 1.43 7.62 31.12 0.24 1.67 16 14 C 0.12 -0.86 5.22 45.58 0.24 -0.63 16 15 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 16 N -0.36 -0.54 3.81 -328.64 -1.25 -1.80 16 17 C 0.25 0.86 10.83 180.36 1.95 2.81 16 18 N -0.58 -5.02 11.19 -204.01 -2.28 -7.30 16 19 C 0.19 1.18 13.03 180.76 2.36 3.54 16 20 N -0.34 -2.29 12.70 -61.25 -0.78 -3.06 16 21 C -0.14 1.52 7.14 31.18 0.22 1.75 16 22 C 0.09 0.47 6.80 39.03 0.27 0.74 16 23 C -0.13 -0.36 10.00 22.37 0.22 -0.14 16 24 C -0.11 -0.35 10.01 22.30 0.22 -0.12 16 25 C -0.15 -0.87 9.97 22.03 0.22 -0.65 16 26 C -0.09 -0.78 10.05 22.23 0.22 -0.56 16 27 C -0.12 -1.01 6.35 -20.20 -0.13 -1.13 16 28 H 0.38 1.32 8.70 -74.06 -0.64 0.68 16 29 H 0.11 0.37 7.96 -2.38 -0.02 0.35 16 30 H -0.27 -0.16 7.00 99.48 0.70 0.54 16 31 H -0.31 -2.03 7.11 99.48 0.71 -1.32 16 32 H 0.20 -1.32 6.27 -2.91 -0.02 -1.34 16 33 H 0.15 -2.45 8.14 -2.39 -0.02 -2.47 16 34 H 0.16 -3.07 8.12 -2.38 -0.02 -3.09 16 35 H 0.43 -8.70 8.73 -92.71 -0.81 -9.51 16 36 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.15 -2.56 8.12 -2.39 -0.02 -2.58 16 38 H 0.23 -0.40 6.76 -2.91 -0.02 -0.42 16 39 H 0.24 -0.13 8.06 -2.91 -0.02 -0.16 16 40 H 0.14 -2.34 8.14 -2.39 -0.02 -2.36 16 41 H 0.08 -0.61 7.04 -2.39 -0.02 -0.63 16 42 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 43 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 44 H 0.13 0.26 8.06 -2.91 -0.02 0.23 16 45 H 0.12 0.95 8.06 -2.91 -0.02 0.92 16 Total: 0.00 -36.65 383.82 0.32 -36.34 By element: Atomic # 1 Polarization: -23.25 SS G_CDS: -0.37 Total: -23.63 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 8.39 Total: 4.01 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -7.85 Total: -6.84 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.97 Total: -10.84 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.11 Total: 0.96 kcal Total: -36.65 0.32 -36.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15494484_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.998 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds