Wall clock time and date at job start Tue Mar 9 2021 20:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15263 * 290.27415 * 3 2 1 5 5 C 1.37952 * 119.84869 * 180.02562 * 4 3 2 6 6 C 1.38369 * 120.14581 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.84325 * 179.97438 * 6 5 4 8 8 H 1.09007 * 112.85002 * 348.80520 * 7 6 5 9 9 C 1.53777 * 113.61393 * 120.00244 * 7 6 5 10 10 C 1.53784 * 87.08269 * 140.06608 * 9 7 6 11 11 H 1.09001 * 113.61507 * 219.93667 * 10 9 7 12 12 N 1.46498 * 113.61507 * 89.11382 * 10 9 7 13 13 C 1.34777 * 119.99828 * 156.25317 * 12 10 9 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 10 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 10 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 O 1.42899 * 109.47438 * 179.97438 * 16 15 13 18 18 C 1.35903 * 117.00425 * 180.02562 * 17 16 15 19 19 C 1.38733 * 120.05420 * 359.72464 * 18 17 16 20 20 C 1.38140 * 119.94317 * 179.74519 * 19 18 17 21 21 C 1.38265 * 120.05404 * 0.50801 * 20 19 18 22 22 C 1.50703 * 119.94371 * 179.74563 * 21 20 19 23 23 O 1.42899 * 109.47346 * 120.02852 * 22 21 20 24 24 Si 1.86301 * 109.47184 * 0.02562 * 22 21 20 25 25 C 1.38272 * 120.11542 * 359.77326 * 21 20 19 26 26 C 1.38151 * 120.05022 * 359.97034 * 25 21 20 27 27 C 1.53781 * 87.17096 * 334.52755 * 10 9 7 28 28 C 1.38353 * 120.30674 * 0.24091 * 6 5 4 29 29 C 1.37950 * 120.15304 * 359.47950 * 28 6 5 30 30 H 1.07997 * 120.07536 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.92748 * 180.02562 * 5 4 3 32 32 H 1.08996 * 113.61421 * 25.51605 * 9 7 6 33 33 H 1.09002 * 113.69450 * 254.62446 * 9 7 6 34 34 H 0.97001 * 120.00384 * 336.53764 * 12 10 9 35 35 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 36 36 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 37 37 H 1.08998 * 109.47508 * 300.00200 * 16 15 13 38 38 H 1.09011 * 109.47182 * 60.00188 * 16 15 13 39 39 H 1.08001 * 120.02301 * 0.02562 * 19 18 17 40 40 H 1.07995 * 119.97633 * 180.23613 * 20 19 18 41 41 H 1.09007 * 109.46986 * 240.02384 * 22 21 20 42 42 H 0.96704 * 113.99474 * 299.99676 * 23 22 21 43 43 H 1.48500 * 109.99777 * 58.67993 * 24 22 21 44 44 H 1.48498 * 110.00076 * 180.02562 * 24 22 21 45 45 H 1.07998 * 119.97325 * 179.97438 * 25 21 20 46 46 H 1.07998 * 120.02066 * 179.97438 * 26 25 21 47 47 H 1.08993 * 113.61427 * 140.02567 * 27 10 9 48 48 H 1.09003 * 113.61197 * 270.92752 * 27 10 9 49 49 H 1.08007 * 119.92523 * 179.72082 * 28 6 5 50 50 H 1.07999 * 120.08019 * 180.25702 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.4174 1.1325 5 6 4.6490 -0.4137 1.1258 6 6 5.3374 0.0035 0.0004 7 6 6.8444 0.0052 0.0007 8 1 7.2676 -0.1532 0.9927 9 6 7.4617 -0.8940 -1.0832 10 6 8.5081 0.2129 -1.2945 11 1 8.7623 0.3794 -2.3413 12 7 9.6882 0.0762 -0.4373 13 6 10.8577 0.6352 -0.8066 14 8 10.9318 1.2557 -1.8460 15 6 12.0733 0.4893 0.0721 16 6 13.2580 1.2119 -0.5721 17 8 14.4105 1.0741 0.2614 18 6 15.5573 1.6629 -0.1690 19 6 15.5744 2.3542 -1.3717 20 6 16.7399 2.9563 -1.8044 21 6 17.8915 2.8615 -1.0451 22 6 19.1631 3.5145 -1.5224 23 8 19.5943 4.4782 -0.5593 24 14 18.8524 4.3616 -3.1523 25 6 17.8786 2.1682 0.1512 26 6 16.7141 1.5688 0.5909 27 6 7.4623 1.2001 -0.7500 28 6 4.6486 0.4242 -1.1233 29 6 3.2691 0.4202 -1.1324 30 1 2.7334 -0.7429 2.0117 31 1 5.1929 -0.7372 2.0010 32 1 6.8111 -1.0499 -1.9438 33 1 7.8806 -1.8227 -0.6957 34 1 9.6290 -0.4201 0.3940 35 1 11.8695 0.9264 1.0497 36 1 12.3121 -0.5677 0.1895 37 1 13.4619 0.7753 -1.5498 38 1 13.0189 2.2690 -0.6890 39 1 14.6760 2.4253 -1.9669 40 1 16.7528 3.4978 -2.7387 41 1 19.9358 2.7561 -1.6485 42 1 18.9545 5.1847 -0.3963 43 1 17.7784 5.3759 -3.0009 44 1 20.0989 5.0090 -3.6341 45 1 18.7795 2.0953 0.7423 46 1 16.7047 1.0270 1.5251 47 1 7.8814 1.9614 -0.0923 48 1 6.8119 1.6157 -1.5197 49 1 5.1921 0.7528 -1.9969 50 1 2.7326 0.7449 -2.0116 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_4549602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:16:07 Heat of formation + Delta-G solvation = 6.164061 kcal Electronic energy + Delta-G solvation = -31329.818826 eV Core-core repulsion = 26868.891124 eV Total energy + Delta-G solvation = -4460.927702 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.63267 -41.25086 -40.47220 -39.31145 -38.92321 -37.44891 -37.27751 -34.61082 -33.32371 -32.22914 -32.02141 -31.82304 -31.30951 -27.15334 -26.61918 -26.39406 -25.47318 -23.83467 -23.61562 -23.05073 -22.22154 -21.49877 -20.24983 -19.81785 -19.51694 -18.45195 -17.92032 -17.44865 -17.15617 -17.04673 -16.70027 -16.49371 -16.32770 -16.14920 -15.93834 -15.62661 -15.57745 -15.16949 -15.06998 -14.73424 -14.70497 -14.51824 -14.39678 -14.29063 -14.24358 -14.15296 -13.87095 -13.75460 -13.47673 -13.38600 -13.15932 -12.95550 -12.79264 -12.77438 -12.28192 -12.19253 -12.04627 -11.79864 -11.75726 -11.63643 -11.59781 -11.15197 -11.01278 -10.59685 -10.06046 -10.02184 -9.92953 -9.63623 -9.20113 -4.92620 -0.22060 0.29542 0.32240 0.43882 1.32584 1.55983 1.57195 1.59408 1.73548 1.89182 1.94925 2.52020 2.66828 2.85892 2.86955 3.44025 3.53039 3.59500 3.72770 3.73658 3.77275 3.84505 3.91331 3.93829 3.95450 3.99776 4.04714 4.07304 4.28094 4.30237 4.36822 4.43316 4.47228 4.53621 4.58371 4.68383 4.72925 4.74029 4.81785 4.82864 4.87723 4.94379 4.99042 4.99539 5.11345 5.14891 5.19759 5.23798 5.30356 5.31139 5.38723 5.50622 5.57488 5.72883 5.73739 5.90732 6.34246 6.40520 6.49862 6.52064 7.21977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.276 3.724 3 C -0.055 4.055 4 C -0.069 4.069 5 C -0.116 4.116 6 C -0.038 4.038 7 C -0.070 4.070 8 H 0.120 0.880 9 C -0.124 4.124 10 C 0.112 3.888 11 H 0.084 0.916 12 N -0.698 5.698 13 C 0.522 3.478 14 O -0.583 6.583 15 C -0.133 4.133 16 C 0.071 3.929 17 O -0.321 6.321 18 C 0.124 3.876 19 C -0.210 4.210 20 C -0.080 4.080 21 C -0.159 4.159 22 C -0.074 4.074 23 O -0.548 6.548 24 Si 0.758 3.242 25 C -0.059 4.059 26 C -0.159 4.159 27 C -0.144 4.144 28 C -0.121 4.121 29 C -0.069 4.069 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.420 0.580 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.385 0.615 43 H -0.286 1.286 44 H -0.302 1.302 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.150 0.850 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 -4.420 1.822 5.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.038 4.038 3 C -0.058 4.058 4 C -0.089 4.089 5 C -0.134 4.134 6 C -0.038 4.038 7 C -0.088 4.088 8 H 0.138 0.862 9 C -0.162 4.162 10 C 0.006 3.994 11 H 0.102 0.898 12 N -0.350 5.350 13 C 0.310 3.690 14 O -0.463 6.463 15 C -0.172 4.172 16 C -0.004 4.004 17 O -0.235 6.235 18 C 0.079 3.921 19 C -0.228 4.228 20 C -0.097 4.097 21 C -0.160 4.160 22 C -0.183 4.183 23 O -0.357 6.357 24 Si 0.664 3.336 25 C -0.077 4.077 26 C -0.177 4.177 27 C -0.182 4.182 28 C -0.139 4.139 29 C -0.089 4.089 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.257 0.743 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.234 0.766 43 H -0.213 1.213 44 H -0.230 1.230 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.167 0.833 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.469 -3.745 0.845 4.111 hybrid contribution -0.244 0.823 1.034 1.344 sum 1.225 -2.922 1.879 3.683 Atomic orbital electron populations 1.81319 1.13870 1.10876 1.09199 1.26220 0.93162 0.92159 0.92274 1.16161 0.82834 1.08795 0.98025 1.21381 0.95008 0.96052 0.96490 1.21275 0.92951 0.99903 0.99249 1.20154 0.95851 0.94653 0.93187 1.21762 0.89570 0.96983 1.00461 0.86222 1.23375 0.96234 0.97244 0.99346 1.21879 0.84538 0.97893 0.95085 0.89774 1.45526 1.08527 1.55227 1.25681 1.20613 0.84980 0.77724 0.85722 1.90746 1.85657 1.42929 1.26952 1.21437 0.90005 1.05334 1.00448 1.22475 0.83186 1.01177 0.93569 1.85957 1.17277 1.71540 1.48726 1.19174 0.86495 0.93136 0.93317 1.21416 1.00469 1.03430 0.97514 1.20989 0.91701 0.97897 0.99160 1.20251 0.95753 1.02763 0.97204 1.25093 0.96782 0.95108 1.01347 1.86562 1.47898 1.40026 1.61166 0.94172 0.76699 0.83611 0.79147 1.20976 0.97629 0.94026 0.95103 1.20673 0.90626 1.04632 1.01777 1.23622 0.97531 0.96630 1.00459 1.21176 0.92948 1.00281 0.99478 1.21337 0.94863 0.96170 0.96568 0.84123 0.82643 0.87906 0.89111 0.74267 0.85547 0.85383 0.91442 0.91812 0.84195 0.83978 0.85625 0.76565 1.21304 1.23047 0.84247 0.84008 0.91307 0.88282 0.83288 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.43 18.54 19.00 0.35 -5.08 16 2 C 0.28 1.32 15.33 88.33 1.35 2.68 16 3 C -0.05 0.10 5.73 -21.36 -0.12 -0.02 16 4 C -0.07 0.37 9.76 22.54 0.22 0.59 16 5 C -0.12 1.02 9.69 22.23 0.22 1.23 16 6 C -0.04 0.34 5.30 -19.81 -0.10 0.23 16 7 C -0.07 0.83 3.86 -10.92 -0.04 0.79 16 8 H 0.12 -1.79 8.09 -2.38 -0.02 -1.81 16 9 C -0.12 1.45 7.29 31.12 0.23 1.67 16 10 C 0.11 -0.85 4.30 45.52 0.20 -0.65 16 11 H 0.08 -0.21 7.50 -2.39 -0.02 -0.23 16 12 N -0.70 6.18 5.26 -440.03 -2.32 3.87 16 13 C 0.52 -1.59 7.83 87.66 0.69 -0.90 16 14 O -0.58 -3.76 15.60 -3.04 -0.05 -3.80 16 15 C -0.13 0.98 6.07 29.85 0.18 1.16 16 16 C 0.07 -0.11 4.03 71.98 0.29 0.18 16 17 O -0.32 -0.47 10.14 -92.46 -0.94 -1.41 16 18 C 0.12 0.35 6.69 22.51 0.15 0.50 16 19 C -0.21 -0.35 9.04 22.36 0.20 -0.14 16 20 C -0.08 -0.03 8.66 22.25 0.19 0.16 16 21 C -0.16 -0.12 5.39 -19.85 -0.11 -0.23 16 22 C -0.07 0.01 2.82 71.24 0.20 0.22 16 23 O -0.55 -1.53 12.77 -148.98 -1.90 -3.43 16 24 Si 0.76 -0.79 29.78 68.60 2.04 1.26 16 25 C -0.06 -0.07 9.61 22.26 0.21 0.14 16 26 C -0.16 -0.29 9.99 22.37 0.22 -0.06 16 27 C -0.14 1.25 7.27 31.21 0.23 1.48 16 28 C -0.12 0.95 8.60 22.23 0.19 1.14 16 29 C -0.07 0.33 9.76 22.54 0.22 0.55 16 30 H 0.14 -1.04 8.06 -2.91 -0.02 -1.06 16 31 H 0.16 -2.08 8.05 -2.91 -0.02 -2.10 16 32 H 0.10 -1.18 7.73 -2.39 -0.02 -1.20 16 33 H 0.09 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.42 -6.39 8.70 -92.71 -0.81 -7.19 16 35 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 36 H 0.13 -1.42 8.14 -2.39 -0.02 -1.44 16 37 H 0.07 -0.02 7.61 -2.39 -0.02 -0.04 16 38 H 0.06 0.01 7.63 -2.38 -0.02 -0.01 16 39 H 0.14 -0.03 6.30 -2.91 -0.02 -0.05 16 40 H 0.14 -0.46 4.87 -2.91 -0.01 -0.47 16 41 H 0.13 -0.25 7.96 -2.38 -0.02 -0.27 16 42 H 0.39 -0.94 8.70 -74.05 -0.64 -1.59 16 43 H -0.29 -0.90 7.11 99.48 0.71 -0.19 16 44 H -0.30 -1.98 7.11 99.48 0.71 -1.28 16 45 H 0.14 -0.08 8.06 -2.91 -0.02 -0.11 16 46 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 47 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.10 -0.88 6.30 -2.39 -0.02 -0.90 16 49 H 0.15 -1.64 6.63 -2.91 -0.02 -1.66 16 50 H 0.14 -0.90 8.06 -2.91 -0.02 -0.93 16 Total: 0.00 -25.22 424.17 1.60 -23.62 By element: Atomic # 1 Polarization: -25.32 SS G_CDS: -0.41 Total: -25.73 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.81 Total: 10.71 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -1.96 Total: -1.21 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -2.89 Total: -8.64 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.04 Total: 1.26 kcal Total: -25.22 1.60 -23.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_4549602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.784 kcal (2) G-P(sol) polarization free energy of solvation -25.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds