Wall clock time and date at job start Tue Mar 9 2021 20:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39633 * 120.15283 * 41.08303 * 3 2 1 5 5 C 1.37939 * 119.85094 * 180.02562 * 4 3 2 6 6 C 1.38371 * 120.14950 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.84721 * 179.97438 * 6 5 4 8 8 H 1.09006 * 112.91053 * 11.24878 * 7 6 5 9 9 C 1.53779 * 113.61419 * 142.50085 * 7 6 5 10 10 C 1.53784 * 87.08045 * 139.98099 * 9 7 6 11 11 H 1.09004 * 113.61451 * 220.02152 * 10 9 7 12 12 N 1.46496 * 113.61524 * 89.11591 * 10 9 7 13 13 C 1.34776 * 120.00015 * 107.50411 * 12 10 9 14 14 O 1.21280 * 119.99898 * 359.97438 * 13 12 10 15 15 C 1.50704 * 120.00197 * 180.02562 * 13 12 10 16 16 O 1.42896 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.35903 * 116.99812 * 179.97438 * 16 15 13 18 18 C 1.38707 * 120.05460 * 179.97438 * 17 16 15 19 19 N 1.48003 * 120.02935 * 359.95976 * 18 17 16 20 20 O 1.21804 * 119.99763 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00161 * 0.02562 * 19 18 17 22 22 C 1.38170 * 119.94333 * 179.97438 * 18 17 16 23 23 C 1.38242 * 120.05826 * 0.02562 * 22 18 17 24 24 C 1.50693 * 119.94737 * 179.97438 * 23 22 18 25 25 O 1.42898 * 109.47261 * 300.00317 * 24 23 22 26 26 Si 1.86303 * 109.47109 * 180.02562 * 24 23 22 27 27 C 1.38299 * 120.10751 * 359.97438 * 23 22 18 28 28 C 1.38127 * 120.05473 * 359.73951 * 27 23 22 29 29 C 1.53779 * 113.61123 * 239.99992 * 7 6 5 30 30 C 1.38362 * 120.30413 * 0.22919 * 6 5 4 31 31 C 1.37949 * 120.14715 * 359.48951 * 30 6 5 32 32 H 1.08001 * 120.07619 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92902 * 179.97438 * 5 4 3 34 34 H 1.09002 * 113.61557 * 25.43210 * 9 7 6 35 35 H 1.09004 * 113.61501 * 254.52631 * 9 7 6 36 36 H 0.96998 * 120.00377 * 287.50245 * 12 10 9 37 37 H 1.09003 * 109.46837 * 299.99928 * 15 13 12 38 38 H 1.09000 * 109.47088 * 59.99953 * 15 13 12 39 39 H 1.08001 * 119.97181 * 180.02562 * 22 18 17 40 40 H 1.08996 * 109.47058 * 60.00358 * 24 23 22 41 41 H 0.96698 * 113.99863 * 300.00021 * 25 24 23 42 42 H 1.48501 * 109.99904 * 180.02562 * 26 24 23 43 43 H 1.48509 * 109.99817 * 301.31892 * 26 24 23 44 44 H 1.07993 * 119.96985 * 179.97438 * 27 23 22 45 45 H 1.07995 * 120.02316 * 180.27536 * 28 27 23 46 46 H 1.08997 * 113.61646 * 105.47284 * 29 7 6 47 47 H 1.08998 * 113.69354 * 334.57592 * 29 7 6 48 48 H 1.07997 * 119.92444 * 179.72282 * 30 6 5 49 49 H 1.08000 * 120.07285 * 180.25584 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2697 -0.9091 -0.7934 5 6 4.6491 -0.9034 -0.7883 6 6 5.3374 0.0009 0.0012 7 6 6.8444 0.0008 0.0021 8 1 7.2691 -0.6125 -0.7927 9 6 7.4604 1.4069 0.0912 10 6 8.5061 0.8028 1.0433 11 1 8.7577 1.4505 1.8832 12 7 9.6875 0.2734 0.3576 13 6 10.8629 0.9280 0.4375 14 8 10.9424 1.9556 1.0767 15 6 12.0781 0.3837 -0.2682 16 8 13.1915 1.2486 -0.0352 17 6 14.3745 0.8987 -0.6055 18 6 15.4965 1.6931 -0.4210 19 7 15.4065 2.9236 0.3965 20 8 16.3922 3.6205 0.5585 21 8 14.3471 3.2387 0.9081 22 6 16.6981 1.3350 -1.0014 23 6 16.7826 0.1862 -1.7659 24 6 18.0943 -0.2017 -2.3983 25 8 18.5214 0.8353 -3.2837 26 14 17.8778 -1.7851 -3.3558 27 6 15.6654 -0.6075 -1.9513 28 6 14.4633 -0.2569 -1.3683 29 6 7.4595 -0.2708 1.3851 30 6 4.6483 0.9016 0.7939 31 6 3.2689 0.9106 0.7938 32 1 2.7338 -1.6163 -1.4092 33 1 5.1932 -1.6068 -1.4011 34 1 6.8087 2.1399 0.5668 35 1 7.8800 1.7603 -0.8508 36 1 9.6239 -0.5483 -0.1539 37 1 12.3046 -0.6118 0.1137 38 1 11.8811 0.3260 -1.3387 39 1 17.5721 1.9530 -0.8578 40 1 18.8438 -0.3468 -1.6203 41 1 17.9013 1.0188 -4.0027 42 1 19.1646 -2.1788 -3.9839 43 1 17.4029 -2.8640 -2.4526 44 1 15.7338 -1.5042 -2.5493 45 1 13.5922 -0.8795 -1.5098 46 1 7.8784 -1.2718 1.4878 47 1 6.8085 0.0029 2.2154 48 1 5.1917 1.6017 1.4111 49 1 2.7323 1.6170 1.4099 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_4549638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:16:38 Heat of formation + Delta-G solvation = 18.613943 kcal Electronic energy + Delta-G solvation = -36454.823633 eV Core-core repulsion = 31318.956982 eV Total energy + Delta-G solvation = -5135.866651 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.26968 -41.83121 -41.39978 -40.46574 -39.56547 -38.82157 -37.57333 -37.44629 -37.31817 -34.66192 -33.45210 -32.33238 -32.14719 -31.91787 -29.78226 -27.80247 -26.82244 -26.60143 -26.36585 -24.22381 -23.72664 -23.24977 -22.78584 -21.88590 -20.52740 -20.25999 -19.81804 -19.75105 -19.10563 -18.61442 -18.47947 -18.11762 -17.56447 -17.38270 -16.90759 -16.65587 -16.47662 -16.29721 -16.05879 -15.70499 -15.59871 -15.52438 -15.25273 -15.13262 -14.75037 -14.67700 -14.52556 -14.28332 -14.07214 -13.99537 -13.84852 -13.75417 -13.69847 -13.37865 -13.20361 -13.13870 -12.89927 -12.68604 -12.32868 -12.25463 -12.23491 -12.18097 -12.16280 -11.92700 -11.77905 -11.61939 -11.14484 -10.97985 -10.81014 -10.54634 -10.08808 -9.91200 -9.75974 -9.61750 -4.98105 -1.29243 -0.21582 -0.20353 0.17984 0.37932 0.45916 1.24260 1.29372 1.50126 1.58385 1.65642 1.90612 2.04536 2.07907 2.36231 2.87710 2.88420 3.14561 3.28046 3.42135 3.53327 3.54605 3.65312 3.73832 3.75543 3.79473 3.82529 3.96113 3.97889 4.01584 4.05153 4.10658 4.31601 4.32348 4.37811 4.45346 4.53469 4.55617 4.65985 4.73834 4.84716 4.86791 4.89385 4.93754 5.00188 5.09962 5.13145 5.16741 5.21791 5.24222 5.32538 5.40798 5.56363 5.73540 5.80457 5.93010 6.41756 6.43620 6.51729 6.75029 7.22930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.276 3.724 3 C -0.055 4.055 4 C -0.069 4.069 5 C -0.113 4.113 6 C -0.038 4.038 7 C -0.066 4.066 8 H 0.128 0.872 9 C -0.146 4.146 10 C 0.111 3.889 11 H 0.077 0.923 12 N -0.689 5.689 13 C 0.509 3.491 14 O -0.567 6.567 15 C 0.023 3.977 16 O -0.292 6.292 17 C 0.195 3.805 18 C -0.105 4.105 19 N 0.035 4.965 20 O -0.208 6.208 21 O -0.171 6.171 22 C -0.005 4.005 23 C -0.150 4.150 24 C -0.083 4.083 25 O -0.559 6.559 26 Si 0.800 3.200 27 C -0.005 4.005 28 C -0.187 4.187 29 C -0.123 4.123 30 C -0.123 4.123 31 C -0.071 4.071 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.424 0.576 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.398 0.602 42 H -0.307 1.307 43 H -0.262 1.262 44 H 0.189 0.811 45 H 0.209 0.791 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.146 0.854 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -13.445 -8.918 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.038 4.038 3 C -0.059 4.059 4 C -0.089 4.089 5 C -0.131 4.131 6 C -0.039 4.039 7 C -0.084 4.084 8 H 0.146 0.854 9 C -0.184 4.184 10 C 0.006 3.994 11 H 0.096 0.904 12 N -0.343 5.343 13 C 0.295 3.705 14 O -0.444 6.444 15 C -0.053 4.053 16 O -0.202 6.202 17 C 0.145 3.855 18 C -0.191 4.191 19 N 0.544 4.456 20 O -0.414 6.414 21 O -0.386 6.386 22 C -0.024 4.024 23 C -0.152 4.152 24 C -0.191 4.191 25 O -0.367 6.367 26 Si 0.704 3.296 27 C -0.022 4.022 28 C -0.205 4.205 29 C -0.161 4.161 30 C -0.141 4.141 31 C -0.091 4.091 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.263 0.737 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.126 0.874 41 H 0.248 0.752 42 H -0.236 1.236 43 H -0.188 1.188 44 H 0.206 0.794 45 H 0.226 0.774 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.164 0.836 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.278 -13.885 -8.373 16.216 hybrid contribution 0.441 1.191 1.070 1.661 sum 0.719 -12.693 -7.303 14.662 Atomic orbital electron populations 1.81318 1.13912 1.09913 1.10219 1.26241 0.93194 0.92209 0.92188 1.16167 0.82798 1.02475 1.04418 1.21400 0.95118 0.96251 0.96146 1.21293 0.92844 0.99409 0.99516 1.20169 0.95960 0.93760 0.93967 1.21732 0.89439 0.97842 0.99345 0.85371 1.23589 0.97450 0.96912 1.00457 1.21873 0.84356 0.97472 0.95721 0.90446 1.45262 1.07312 1.28464 1.53301 1.20517 0.85081 0.84083 0.80789 1.90859 1.85259 1.25708 1.42548 1.23157 0.82598 0.95031 1.04541 1.86473 1.16111 1.49847 1.67811 1.18959 0.83803 0.92303 0.90417 1.20871 0.97829 0.90668 1.09701 1.43912 0.99883 1.02315 0.99451 1.94509 1.28131 1.51831 1.66915 1.94672 1.17161 1.76799 1.49942 1.20823 0.94430 0.96353 0.90805 1.20452 0.98315 0.95239 1.01191 1.25491 0.93549 1.02975 0.97126 1.86530 1.50128 1.56878 1.43151 0.93821 0.82882 0.71467 0.81439 1.21733 0.89850 0.97777 0.92852 1.21832 1.02596 0.95618 1.00471 1.23381 0.96014 0.99648 0.97051 1.21173 0.92941 0.99879 1.00069 1.21317 0.94913 0.96458 0.96443 0.84016 0.82168 0.88696 0.90989 0.73705 0.83816 0.83454 0.83464 0.87415 0.75191 1.23574 1.18830 0.79407 0.77396 0.88629 0.88262 0.83616 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.33 18.54 19.00 0.35 -4.98 16 2 C 0.28 1.23 15.33 88.33 1.35 2.59 16 3 C -0.06 0.13 5.73 -21.36 -0.12 0.01 16 4 C -0.07 0.45 9.76 22.54 0.22 0.67 16 5 C -0.11 1.19 9.69 22.23 0.22 1.40 16 6 C -0.04 0.39 5.30 -19.80 -0.10 0.28 16 7 C -0.07 0.90 3.85 -11.01 -0.04 0.86 16 8 H 0.13 -2.37 8.09 -2.38 -0.02 -2.39 16 9 C -0.15 1.35 7.25 31.12 0.23 1.58 16 10 C 0.11 -0.88 4.32 45.52 0.20 -0.68 16 11 H 0.08 -0.06 7.47 -2.39 -0.02 -0.08 16 12 N -0.69 7.53 5.26 -440.02 -2.32 5.21 16 13 C 0.51 -1.31 7.91 87.66 0.69 -0.62 16 14 O -0.57 -6.80 16.10 16.01 0.26 -6.54 16 15 C 0.02 -0.25 5.22 71.24 0.37 0.12 16 16 O -0.29 -0.59 7.68 -63.44 -0.49 -1.08 16 17 C 0.20 -0.30 6.67 22.50 0.15 -0.15 16 18 C -0.11 -0.60 6.87 36.47 0.25 -0.34 16 19 N 0.03 0.54 4.45 -46.24 -0.21 0.34 16 20 O -0.21 -3.76 18.45 18.88 0.35 -3.41 16 21 O -0.17 -3.50 17.24 25.61 0.44 -3.06 16 22 C 0.00 0.00 9.11 22.25 0.20 0.20 16 23 C -0.15 1.05 5.39 -19.85 -0.11 0.94 16 24 C -0.08 0.59 2.82 71.23 0.20 0.79 16 25 O -0.56 2.41 12.77 -148.98 -1.90 0.51 16 26 Si 0.80 -9.09 29.78 68.60 2.04 -7.04 16 27 C 0.00 0.07 8.66 22.26 0.19 0.26 16 28 C -0.19 2.46 9.04 22.37 0.20 2.66 16 29 C -0.12 1.58 7.29 31.12 0.23 1.80 16 30 C -0.12 0.99 8.57 22.23 0.19 1.18 16 31 C -0.07 0.34 9.76 22.54 0.22 0.56 16 32 H 0.14 -1.24 8.06 -2.91 -0.02 -1.26 16 33 H 0.16 -2.57 8.05 -2.91 -0.02 -2.59 16 34 H 0.09 -0.80 6.31 -2.39 -0.02 -0.81 16 35 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.42 -8.51 8.70 -92.71 -0.81 -9.31 16 37 H 0.14 -2.78 7.65 -2.39 -0.02 -2.80 16 38 H 0.15 -2.94 7.68 -2.39 -0.02 -2.96 16 39 H 0.15 0.49 7.61 -2.91 -0.02 0.47 16 40 H 0.11 -0.53 7.96 -2.39 -0.02 -0.55 16 41 H 0.40 -5.21 8.70 -74.06 -0.64 -5.85 16 42 H -0.31 0.39 7.11 99.48 0.71 1.09 16 43 H -0.26 2.51 7.11 99.48 0.71 3.22 16 44 H 0.19 -4.01 4.87 -2.91 -0.01 -4.02 16 45 H 0.21 -4.96 6.30 -2.91 -0.02 -4.98 16 46 H 0.10 -1.46 8.14 -2.39 -0.02 -1.48 16 47 H 0.10 -1.16 7.71 -2.39 -0.02 -1.18 16 48 H 0.15 -1.53 6.66 -2.91 -0.02 -1.55 16 49 H 0.14 -0.82 8.06 -2.91 -0.02 -0.85 16 Total: 0.00 -47.30 429.18 2.92 -44.38 By element: Atomic # 1 Polarization: -38.11 SS G_CDS: -0.35 Total: -38.45 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 4.74 Total: 14.11 kcal Atomic # 7 Polarization: 2.75 SS G_CDS: -2.17 Total: 0.58 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.34 Total: -13.58 kcal Atomic # 14 Polarization: -9.09 SS G_CDS: 2.04 Total: -7.04 kcal Total: -47.30 2.92 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_4549638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.996 kcal (2) G-P(sol) polarization free energy of solvation -47.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds