Wall clock time and date at job start Tue Mar 9 2021 20:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35983 * 116.99932 * 2 1 4 4 C 1.38675 * 119.99435 * 180.02562 * 3 2 1 5 5 C 1.38156 * 119.99598 * 179.74418 * 4 3 2 6 6 C 1.50701 * 120.00294 * 180.25009 * 5 4 3 7 7 O 1.42901 * 109.47210 * 255.25818 * 6 5 4 8 8 Si 1.86304 * 109.46852 * 15.25443 * 6 5 4 9 9 C 1.38672 * 120.00103 * 0.50496 * 5 4 3 10 10 O 1.35983 * 120.00412 * 179.74418 * 9 5 4 11 11 C 1.42897 * 117.00294 * 179.72695 * 10 9 5 12 12 C 1.50702 * 109.47333 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99733 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99797 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99418 * 180.02562 * 14 12 11 16 16 H 1.09000 * 112.85288 * 23.80409 * 15 14 12 17 17 C 1.53783 * 113.61007 * 154.99668 * 15 14 12 18 18 C 1.53786 * 87.08050 * 89.11544 * 17 15 14 19 19 H 1.09002 * 113.61357 * 270.88070 * 18 17 15 20 20 C 1.50697 * 113.61519 * 140.06465 * 18 17 15 21 21 C 1.38366 * 119.84756 * 301.25120 * 20 18 17 22 22 C 1.37943 * 120.15503 * 179.76737 * 21 20 18 23 23 C 1.39632 * 119.84327 * 0.53239 * 22 21 20 24 24 C 1.43199 * 120.15375 * 179.70440 * 23 22 21 25 25 N 9.69842 * 152.51469 * 213.24572 * 14 1 2 26 26 C 1.39635 * 119.69871 * 359.71854 * 23 22 21 27 27 C 1.37947 * 119.84795 * 0.02562 * 26 23 22 28 28 C 1.53781 * 87.17350 * 25.47154 * 18 17 15 29 29 C 1.38726 * 119.99651 * 359.47084 * 9 5 4 30 30 C 1.38108 * 120.00143 * 0.27574 * 29 9 5 31 31 H 1.09007 * 109.46911 * 300.00242 * 1 2 3 32 32 H 1.08999 * 109.46746 * 60.00191 * 1 2 3 33 33 H 1.08993 * 109.47122 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.00651 * 359.97438 * 4 3 2 35 35 H 1.08995 * 109.47201 * 135.25446 * 6 5 4 36 36 H 0.96698 * 114.00333 * 59.99304 * 7 6 5 37 37 H 1.48503 * 109.99960 * 180.02562 * 8 6 5 38 38 H 1.48496 * 109.99875 * 301.32034 * 8 6 5 39 39 H 1.08994 * 109.47289 * 59.99737 * 11 10 9 40 40 H 1.09004 * 109.46953 * 300.00448 * 11 10 9 41 41 H 0.96995 * 120.00261 * 359.97438 * 14 12 11 42 42 H 1.08992 * 113.61796 * 334.56401 * 17 15 14 43 43 H 1.09000 * 113.61157 * 203.65821 * 17 15 14 44 44 H 1.08000 * 119.92392 * 0.02562 * 21 20 18 45 45 H 1.08002 * 120.08125 * 180.25569 * 22 21 20 46 46 H 1.08002 * 120.07968 * 179.97438 * 26 23 22 47 47 H 1.07993 * 119.92691 * 179.97438 * 27 26 23 48 48 H 1.08999 * 113.61567 * 89.07405 * 28 18 17 49 49 H 1.08998 * 113.61196 * 219.97759 * 28 18 17 50 50 H 1.08009 * 119.99799 * 180.25313 * 29 9 5 51 51 H 1.07998 * 119.99998 * 180.02562 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2841 -0.0005 5 6 4.0585 2.5150 -0.0059 6 6 5.5634 2.5939 -0.0122 7 8 6.0265 2.9642 1.2881 8 14 6.2704 0.9331 -0.4734 9 6 3.3033 3.6781 -0.0001 10 8 3.9206 4.8897 -0.0001 11 6 3.0808 6.0458 -0.0001 12 6 3.9350 7.2873 -0.0007 13 8 5.1440 7.1915 -0.0007 14 7 3.3553 8.5041 -0.0003 15 6 4.1858 9.7110 -0.0015 16 1 5.1824 9.5387 -0.4080 17 6 3.4822 10.9422 -0.5965 18 6 2.9656 11.2347 0.8222 19 1 2.0141 10.7533 1.0482 20 6 2.9803 12.6984 1.1802 21 6 4.1708 13.4030 1.1491 22 6 4.1908 14.7442 1.4710 23 6 3.0079 15.3881 1.8395 24 6 3.0222 16.7787 2.1811 25 7 3.0309 17.8814 2.4533 26 6 1.8110 14.6698 1.8738 27 6 1.8045 13.3302 1.5443 28 6 4.1872 10.4603 1.3445 29 6 1.9180 3.6055 -0.0001 30 6 1.2909 2.3750 0.0000 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 4.0195 0.3783 -0.0005 35 1 5.8851 3.3402 -0.7386 36 1 5.7761 2.3438 1.9862 37 1 7.7540 0.9974 -0.4826 38 1 5.8132 -0.0991 0.4913 39 1 2.4515 6.0377 0.8898 40 1 2.4514 6.0377 -0.8900 41 1 2.3884 8.5807 0.0001 42 1 2.6931 10.6938 -1.3060 43 1 4.1705 11.6980 -0.9749 44 1 5.0858 12.9027 0.8682 45 1 5.1200 15.2939 1.4424 46 1 0.8925 15.1616 2.1584 47 1 0.8796 12.7734 1.5708 48 1 5.0678 11.0845 1.4958 49 1 3.9666 9.8231 2.2009 50 1 1.3297 4.5114 0.0003 51 1 0.2124 2.3185 -0.0004 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_4974302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:16:54 Heat of formation + Delta-G solvation = -16.952721 kcal Electronic energy + Delta-G solvation = -34623.100363 eV Core-core repulsion = 29842.488050 eV Total energy + Delta-G solvation = -4780.612313 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.161 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82687 -41.46884 -40.57371 -39.84655 -39.00400 -38.21136 -37.44058 -36.93469 -34.66888 -32.81129 -32.28680 -31.95690 -30.95488 -29.35773 -27.93639 -26.63331 -26.62715 -26.60761 -24.01060 -23.68931 -23.11879 -22.41233 -21.81765 -20.30086 -19.83740 -19.63267 -18.74283 -18.45910 -17.82060 -17.52861 -17.27077 -17.08003 -16.63100 -16.60442 -16.51190 -16.04582 -16.03392 -15.63374 -15.58773 -15.39062 -15.20610 -15.14224 -14.84488 -14.67150 -14.49471 -14.31204 -14.28658 -14.03564 -13.97216 -13.78162 -13.51313 -13.42726 -13.38869 -13.16480 -12.98813 -12.91547 -12.46208 -12.41915 -12.19640 -11.87063 -11.79633 -11.73340 -11.65179 -11.39027 -11.17587 -10.96532 -10.54891 -10.11635 -10.09618 -9.93204 -9.63919 -8.76432 -4.94978 -0.22286 0.09173 0.39605 0.43860 1.28089 1.48066 1.52947 1.56544 1.57113 1.88994 1.92136 2.37560 2.58010 2.65430 2.85678 2.86814 3.43767 3.51535 3.54666 3.69327 3.72917 3.76095 3.79628 3.94071 3.99676 4.00304 4.03842 4.12909 4.15160 4.17317 4.27913 4.29399 4.43289 4.45557 4.45936 4.50779 4.53269 4.69720 4.72901 4.80803 4.82549 4.86451 4.91358 4.97274 5.01736 5.10057 5.14183 5.18248 5.21335 5.25473 5.30304 5.38567 5.46360 5.54776 5.71483 5.90636 6.23239 6.40334 6.45117 6.51817 6.54580 7.19134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.087 3.913 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.075 4.075 7 O -0.544 6.544 8 Si 0.772 3.228 9 C 0.102 3.898 10 O -0.310 6.310 11 C 0.035 3.965 12 C 0.514 3.486 13 O -0.571 6.571 14 N -0.691 5.691 15 C 0.111 3.889 16 H 0.080 0.920 17 C -0.122 4.122 18 C -0.067 4.067 19 H 0.124 0.876 20 C -0.038 4.038 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.054 4.054 24 C 0.276 3.724 25 N -0.477 5.477 26 C -0.068 4.068 27 C -0.114 4.114 28 C -0.145 4.145 29 C -0.162 4.162 30 C -0.157 4.157 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.382 0.618 37 H -0.301 1.301 38 H -0.274 1.274 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.422 0.578 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.158 0.842 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.167 0.833 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -4.911 -3.686 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.042 3.958 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.183 4.183 7 O -0.351 6.351 8 Si 0.676 3.324 9 C 0.057 3.943 10 O -0.223 6.223 11 C -0.043 4.043 12 C 0.301 3.699 13 O -0.448 6.448 14 N -0.346 5.346 15 C 0.006 3.994 16 H 0.098 0.902 17 C -0.160 4.160 18 C -0.085 4.085 19 H 0.142 0.858 20 C -0.039 4.039 21 C -0.140 4.140 22 C -0.090 4.090 23 C -0.058 4.058 24 C -0.038 4.038 25 N -0.153 5.153 26 C -0.089 4.089 27 C -0.132 4.132 28 C -0.184 4.184 29 C -0.181 4.181 30 C -0.176 4.176 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.125 0.875 36 H 0.230 0.770 37 H -0.229 1.229 38 H -0.200 1.200 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.260 0.740 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.176 0.824 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.185 0.815 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.995 -3.566 -3.354 10.240 hybrid contribution -0.507 0.370 1.342 1.482 sum -9.502 -3.196 -2.012 10.225 Atomic orbital electron populations 1.23343 0.76404 1.05496 1.02430 1.86081 1.23399 1.26577 1.89064 1.18960 0.91984 0.85237 0.99656 1.20272 0.92588 0.97070 1.04529 1.19355 0.96033 0.90602 1.05966 1.25086 0.92006 1.13371 0.87822 1.86657 1.78578 1.52603 1.17301 0.94038 0.76610 0.72589 0.89134 1.18819 0.91494 0.84513 0.99461 1.86209 1.35210 1.11889 1.89023 1.22733 0.92667 0.82183 1.06715 1.20551 0.88299 0.85541 0.75553 1.90786 1.16935 1.87312 1.49809 1.45318 1.11118 1.03545 1.74581 1.21945 0.95513 0.84009 0.97958 0.90183 1.23383 1.00894 0.95652 0.96061 1.21718 0.99998 0.90315 0.96487 0.85825 1.20152 0.93015 0.95772 0.94932 1.21169 0.99230 0.93117 1.00459 1.21325 0.96730 0.95222 0.95722 1.16164 0.96747 0.84405 1.08482 1.26214 0.92284 0.93105 0.92207 1.81312 1.09006 1.13731 1.11217 1.21391 0.96408 0.94746 0.96347 1.21279 0.99276 0.93609 0.99048 1.23633 0.99004 0.98581 0.97148 1.21393 0.92084 0.99990 1.04610 1.21402 1.01523 0.90899 1.03763 0.91616 0.91210 0.86961 0.83864 0.87487 0.76956 1.22918 1.20012 0.86064 0.85530 0.73978 0.88748 0.87915 0.83493 0.84409 0.84031 0.82423 0.88426 0.91302 0.81534 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 1.00 16 2 O -0.34 -0.46 10.50 -93.36 -0.98 -1.44 16 3 C 0.09 0.11 6.68 22.49 0.15 0.26 16 4 C -0.13 -0.34 8.59 22.35 0.19 -0.15 16 5 C -0.12 -0.49 5.27 -19.78 -0.10 -0.59 16 6 C -0.07 -0.44 2.37 71.24 0.17 -0.27 16 7 O -0.54 -5.16 12.88 -148.98 -1.92 -7.08 16 8 Si 0.77 1.82 30.26 68.60 2.08 3.90 16 9 C 0.10 0.28 6.66 22.49 0.15 0.43 16 10 O -0.31 -1.66 9.00 -74.33 -0.67 -2.33 16 11 C 0.03 -0.17 5.22 71.24 0.37 0.21 16 12 C 0.51 0.45 7.91 87.66 0.69 1.15 16 13 O -0.57 -7.81 16.10 16.02 0.26 -7.55 16 14 N -0.69 5.22 5.26 -439.59 -2.31 2.90 16 15 C 0.11 -0.66 4.33 45.61 0.20 -0.46 16 16 H 0.08 0.03 7.47 -2.39 -0.02 0.01 16 17 C -0.12 1.36 7.29 31.12 0.23 1.59 16 18 C -0.07 0.78 3.85 -11.01 -0.04 0.74 16 19 H 0.12 -1.93 8.08 -2.39 -0.02 -1.95 16 20 C -0.04 0.33 5.30 -19.81 -0.10 0.23 16 21 C -0.12 0.88 8.52 22.23 0.19 1.06 16 22 C -0.07 0.30 9.76 22.54 0.22 0.52 16 23 C -0.05 0.09 5.73 -21.36 -0.12 -0.03 16 24 C 0.28 1.39 15.33 88.33 1.35 2.74 16 25 N -0.48 -5.54 18.54 19.00 0.35 -5.19 16 26 C -0.07 0.37 9.76 22.54 0.22 0.59 16 27 C -0.11 1.02 9.69 22.23 0.22 1.24 16 28 C -0.15 1.07 7.27 31.21 0.23 1.30 16 29 C -0.16 0.59 9.03 22.36 0.20 0.79 16 30 C -0.16 0.52 9.03 22.35 0.20 0.72 16 31 H 0.07 -0.58 7.66 -2.38 -0.02 -0.60 16 32 H 0.07 -0.65 7.66 -2.39 -0.02 -0.67 16 33 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.14 0.23 4.86 -2.91 -0.01 0.22 16 35 H 0.11 0.86 7.82 -2.39 -0.02 0.84 16 36 H 0.38 0.96 8.70 -74.06 -0.64 0.32 16 37 H -0.30 -2.93 7.11 99.48 0.71 -2.22 16 38 H -0.27 -1.26 6.67 99.48 0.66 -0.59 16 39 H 0.12 -1.33 7.66 -2.39 -0.02 -1.34 16 40 H 0.13 -1.50 7.66 -2.38 -0.02 -1.52 16 41 H 0.42 -6.62 8.70 -92.71 -0.81 -7.43 16 42 H 0.09 -1.26 8.14 -2.39 -0.02 -1.28 16 43 H 0.10 -1.10 7.65 -2.39 -0.02 -1.12 16 44 H 0.15 -1.46 6.70 -2.91 -0.02 -1.48 16 45 H 0.14 -0.80 8.06 -2.91 -0.02 -0.82 16 46 H 0.14 -1.08 8.06 -2.91 -0.02 -1.10 16 47 H 0.16 -2.20 8.04 -2.91 -0.02 -2.23 16 48 H 0.10 -0.70 6.37 -2.39 -0.02 -0.72 16 49 H 0.07 -0.36 8.14 -2.39 -0.02 -0.37 16 50 H 0.17 -1.89 6.29 -2.91 -0.02 -1.91 16 51 H 0.16 -1.43 6.29 -2.91 -0.02 -1.45 16 Total: 0.00 -34.25 431.87 2.08 -32.17 By element: Atomic # 1 Polarization: -28.00 SS G_CDS: -0.44 Total: -28.44 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.72 Total: 13.06 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -1.96 Total: -2.28 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -3.31 Total: -18.40 kcal Atomic # 14 Polarization: 1.82 SS G_CDS: 2.08 Total: 3.90 kcal Total: -34.25 2.08 -32.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_4974302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.215 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds