Wall clock time and date at job start Tue Mar 9 2021 20:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39631 * 120.15404 * 118.27452 * 3 2 1 5 5 C 1.37946 * 119.84788 * 180.02562 * 4 3 2 6 6 C 1.38359 * 120.14992 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.84557 * 179.97438 * 6 5 4 8 8 H 1.08991 * 112.85113 * 11.19977 * 7 6 5 9 9 C 1.54058 * 113.61739 * 142.50493 * 7 6 5 10 10 C 1.53779 * 86.98421 * 139.98096 * 9 7 6 11 11 H 1.09005 * 113.61424 * 219.98162 * 10 9 7 12 12 N 1.46495 * 113.61921 * 89.16290 * 10 9 7 13 13 C 1.34776 * 120.00573 * 105.86022 * 12 10 9 14 14 O 1.21283 * 119.99401 * 359.97438 * 13 12 10 15 15 C 1.50696 * 120.00286 * 180.02562 * 13 12 10 16 16 N 1.46501 * 109.47112 * 180.02562 * 15 13 12 17 17 C 1.36835 * 125.05910 * 264.97428 * 16 15 13 18 18 C 1.34235 * 109.93739 * 180.02562 * 17 16 15 19 19 C 1.50705 * 126.50377 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46913 * 105.02681 * 19 18 17 21 21 Si 1.86296 * 109.46774 * 345.02914 * 19 18 17 22 22 C 1.46493 * 106.99829 * 0.02562 * 18 17 16 23 23 C 1.39595 * 134.03477 * 180.02562 * 22 18 17 24 24 C 1.36657 * 119.76566 * 180.02562 * 23 22 18 25 25 C 1.38793 * 120.52724 * 359.97210 * 24 23 22 26 26 C 1.37789 * 120.66498 * 0.06304 * 25 24 23 27 27 C 1.37693 * 125.06570 * 85.01367 * 16 15 13 28 28 C 1.53779 * 87.17327 * 334.56805 * 10 9 7 29 29 C 1.38364 * 120.30866 * 0.27716 * 6 5 4 30 30 C 1.37949 * 120.14944 * 359.48657 * 29 6 5 31 31 H 1.07995 * 120.07146 * 0.04389 * 4 3 2 32 32 H 1.07995 * 119.92569 * 179.97438 * 5 4 3 33 33 H 1.09002 * 113.61406 * 25.47391 * 9 7 6 34 34 H 1.09002 * 113.69405 * 254.49171 * 9 7 6 35 35 H 0.96998 * 119.99816 * 285.86053 * 12 10 9 36 36 H 1.08998 * 109.47301 * 59.99937 * 15 13 12 37 37 H 1.09000 * 109.46797 * 300.00176 * 15 13 12 38 38 H 1.07997 * 125.03656 * 359.77167 * 17 16 15 39 39 H 1.08999 * 109.47175 * 225.02858 * 19 18 17 40 40 H 0.96701 * 113.99578 * 180.02562 * 20 19 18 41 41 H 1.48503 * 110.00013 * 298.67796 * 21 19 18 42 42 H 1.48508 * 110.00230 * 59.99735 * 21 19 18 43 43 H 1.07999 * 120.11572 * 359.96719 * 23 22 18 44 44 H 1.07995 * 119.73737 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.66699 * 180.02562 * 25 24 23 46 46 H 1.08008 * 120.11287 * 179.97438 * 26 25 24 47 47 H 1.09004 * 113.61377 * 140.02633 * 28 10 9 48 48 H 1.09002 * 113.61401 * 270.92664 * 28 10 9 49 49 H 1.08000 * 119.92737 * 179.73111 * 29 6 5 50 50 H 1.07997 * 120.07850 * 180.25737 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.5729 -1.0633 5 6 4.6486 0.5695 -1.0571 6 6 5.3374 0.0013 -0.0001 7 6 6.8444 0.0010 -0.0007 8 1 7.2676 0.6390 -0.7764 9 6 7.4621 0.2276 1.3923 10 6 8.5069 -0.8349 1.0124 11 1 8.7601 -1.5102 1.8298 12 7 9.6879 -0.2840 0.3433 13 6 10.8559 -0.1872 1.0088 14 8 10.9290 -0.5560 2.1619 15 6 12.0705 0.3801 0.3205 16 7 13.2037 0.3776 1.2491 17 6 13.5872 1.4381 2.0240 18 6 14.6600 1.1041 2.7584 19 6 15.3869 1.9893 3.7379 20 8 15.0572 1.5954 5.0714 21 14 14.8776 3.7611 3.4698 22 6 14.9911 -0.2837 2.4263 23 6 15.9795 -1.1736 2.8504 24 6 16.0210 -2.4381 2.3337 25 6 15.0876 -2.8452 1.3905 26 6 14.1041 -1.9829 0.9574 27 6 14.0418 -0.6920 1.4715 28 6 7.4601 -1.4075 0.0423 29 6 4.6490 -0.5721 1.0543 30 6 3.2696 -0.5714 1.0633 31 1 2.7327 1.0173 -1.8885 32 1 5.1922 1.0114 -1.8790 33 1 6.8111 -0.0739 2.2130 34 1 7.8824 1.2241 1.5282 35 1 9.6292 0.0113 -0.5788 36 1 11.8636 1.4017 0.0019 37 1 12.3130 -0.2298 -0.5497 38 1 13.1015 2.4026 2.0392 39 1 16.4619 1.8933 3.5859 40 1 15.4901 2.1237 5.7559 41 1 15.2438 4.1928 2.0969 42 1 13.4137 3.9053 3.6741 43 1 16.7094 -0.8636 3.5836 44 1 16.7861 -3.1260 2.6618 45 1 15.1331 -3.8478 0.9917 46 1 13.3825 -2.3089 0.2229 47 1 7.8787 -1.7303 -0.9110 48 1 6.8086 -2.1553 0.4945 49 1 5.1929 -1.0177 1.8740 50 1 2.7334 -1.0156 1.8889 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:17:38 Heat of formation + Delta-G solvation = 93.287784 kcal Electronic energy + Delta-G solvation = -33624.962742 eV Core-core repulsion = 29164.617008 eV Total energy + Delta-G solvation = -4460.345733 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.157 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.62679 -41.58250 -40.47188 -39.12961 -38.08153 -37.61111 -37.44809 -34.79029 -34.16540 -32.31242 -31.99981 -31.39313 -30.35082 -29.08640 -26.84482 -26.70322 -25.67895 -23.97318 -23.76567 -23.36762 -22.74320 -21.81476 -20.61726 -20.33680 -19.87068 -18.71149 -18.30539 -18.19000 -17.78422 -17.26506 -16.69178 -16.55166 -16.47887 -16.35485 -15.78284 -15.63339 -15.55536 -15.20801 -15.10231 -14.93130 -14.81678 -14.79141 -14.62015 -14.43983 -14.33213 -14.17244 -14.08271 -13.81390 -13.61550 -13.51160 -13.37295 -13.17889 -12.94529 -12.74501 -12.62773 -12.50159 -12.24708 -12.03260 -11.86803 -11.79013 -11.72144 -11.24633 -11.22060 -10.61973 -10.18860 -10.16417 -9.97223 -9.68224 -9.23931 -8.71528 -4.94332 -0.26028 0.06161 0.39897 0.58733 1.26572 1.35018 1.36832 1.54440 1.59533 1.71402 1.85694 1.99181 2.10094 2.82500 2.82997 2.89761 3.44690 3.47298 3.52312 3.59843 3.66727 3.70147 3.72724 3.83834 3.88819 3.95918 3.98832 3.99839 4.03227 4.19787 4.23463 4.24640 4.36520 4.38776 4.49042 4.53515 4.62958 4.63355 4.72973 4.77079 4.80627 4.83469 4.86244 4.91725 5.02610 5.09115 5.09524 5.14633 5.25983 5.34737 5.46104 5.48153 5.60402 5.65988 5.67116 5.68082 5.86510 6.07019 6.17574 6.37662 6.41325 6.99967 7.08928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.276 3.724 3 C -0.053 4.053 4 C -0.068 4.068 5 C -0.114 4.114 6 C -0.039 4.039 7 C -0.066 4.066 8 H 0.124 0.876 9 C -0.145 4.145 10 C 0.111 3.889 11 H 0.076 0.924 12 N -0.691 5.691 13 C 0.493 3.507 14 O -0.572 6.572 15 C 0.086 3.914 16 N -0.467 5.467 17 C 0.054 3.946 18 C -0.182 4.182 19 C -0.052 4.052 20 O -0.571 6.571 21 Si 0.787 3.213 22 C -0.120 4.120 23 C -0.083 4.083 24 C -0.152 4.152 25 C -0.103 4.103 26 C -0.135 4.135 27 C 0.090 3.910 28 C -0.121 4.121 29 C -0.122 4.122 30 C -0.069 4.069 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.422 0.578 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.079 0.921 40 H 0.398 0.602 41 H -0.281 1.281 42 H -0.293 1.293 43 H 0.127 0.873 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.135 0.865 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.146 0.854 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 3.158 -5.615 8.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.038 4.038 3 C -0.057 4.057 4 C -0.088 4.088 5 C -0.132 4.132 6 C -0.040 4.040 7 C -0.084 4.084 8 H 0.142 0.858 9 C -0.183 4.183 10 C 0.006 3.994 11 H 0.094 0.906 12 N -0.345 5.345 13 C 0.279 3.721 14 O -0.450 6.450 15 C -0.039 4.039 16 N -0.150 5.150 17 C -0.071 4.071 18 C -0.189 4.189 19 C -0.161 4.161 20 O -0.381 6.381 21 Si 0.691 3.309 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.170 4.170 25 C -0.122 4.122 26 C -0.156 4.156 27 C -0.015 4.015 28 C -0.159 4.159 29 C -0.140 4.140 30 C -0.090 4.090 31 H 0.161 0.839 32 H 0.176 0.824 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.260 0.740 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.192 0.808 39 H 0.097 0.903 40 H 0.248 0.752 41 H -0.208 1.208 42 H -0.221 1.221 43 H 0.145 0.855 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.153 0.847 47 H 0.113 0.887 48 H 0.120 0.880 49 H 0.164 0.836 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.231 3.026 -5.800 7.297 hybrid contribution -0.136 -0.506 -0.168 0.550 sum 3.096 2.520 -5.968 7.180 Atomic orbital electron populations 1.81318 1.13844 1.10587 1.09387 1.26201 0.93142 0.92208 0.92288 1.16161 0.82868 1.07217 0.99445 1.21395 0.94998 0.96008 0.96429 1.21273 0.92958 0.99709 0.99259 1.20138 0.95770 0.94573 0.93484 1.21749 0.89666 0.98429 0.98550 0.85838 1.23620 0.97497 0.99609 0.97583 1.21871 0.84509 0.96336 0.96728 0.90617 1.45454 1.08211 1.63817 1.16997 1.21381 0.85595 0.78339 0.86828 1.90820 1.85175 1.49583 1.19426 1.22003 0.82204 1.07653 0.91999 1.43371 1.24959 1.09593 1.37072 1.21703 0.96796 0.93086 0.95555 1.20054 1.00727 0.94531 1.03629 1.24341 1.00781 1.08059 0.82904 1.86514 1.73534 1.63051 1.14952 0.94112 0.79211 0.75021 0.82589 1.19362 0.98546 0.94558 0.99954 1.20490 0.97171 0.93295 0.99173 1.20975 1.00925 0.96178 0.98957 1.21196 0.93959 0.99986 0.97014 1.20271 1.01634 0.90305 1.03347 1.18475 0.92843 0.90551 0.99588 1.23367 0.95968 0.96266 1.00333 1.21159 0.93028 1.00304 0.99534 1.21327 0.94798 0.96291 0.96556 0.83948 0.82436 0.88539 0.91423 0.73961 0.82588 0.83237 0.80800 0.90337 0.75161 1.20780 1.22064 0.85547 0.83943 0.83226 0.84675 0.88736 0.88023 0.83634 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -5.54 18.54 19.00 0.35 -5.19 16 2 C 0.28 1.41 15.33 88.33 1.35 2.76 16 3 C -0.05 0.08 5.73 -21.36 -0.12 -0.04 16 4 C -0.07 0.36 9.76 22.54 0.22 0.58 16 5 C -0.11 0.99 9.69 22.23 0.22 1.21 16 6 C -0.04 0.33 5.30 -19.80 -0.10 0.22 16 7 C -0.07 0.75 3.87 -10.92 -0.04 0.70 16 8 H 0.12 -1.87 8.09 -2.39 -0.02 -1.89 16 9 C -0.14 1.01 7.27 31.21 0.23 1.23 16 10 C 0.11 -0.62 4.29 45.52 0.20 -0.43 16 11 H 0.08 0.09 7.50 -2.38 -0.02 0.07 16 12 N -0.69 5.32 5.26 -440.05 -2.32 3.01 16 13 C 0.49 0.10 7.90 87.66 0.69 0.79 16 14 O -0.57 -7.48 16.04 -3.04 -0.05 -7.52 16 15 C 0.09 -0.42 6.48 85.63 0.55 0.13 16 16 N -0.47 -2.55 2.27 -520.01 -1.18 -3.73 16 17 C 0.05 0.41 9.89 83.00 0.82 1.23 16 18 C -0.18 -1.85 5.61 -18.62 -0.10 -1.95 16 19 C -0.05 -0.21 3.05 71.24 0.22 0.01 16 20 O -0.57 -3.18 12.86 -148.98 -1.92 -5.10 16 21 Si 0.79 -0.93 30.79 68.60 2.11 1.18 16 22 C -0.12 -1.46 6.35 -20.20 -0.13 -1.59 16 23 C -0.08 -0.79 10.05 22.23 0.22 -0.56 16 24 C -0.15 -0.91 9.97 22.03 0.22 -0.69 16 25 C -0.10 -0.47 10.01 22.30 0.22 -0.25 16 26 C -0.14 -0.79 10.00 22.37 0.22 -0.57 16 27 C 0.09 0.86 6.80 39.03 0.27 1.13 16 28 C -0.12 1.30 7.28 31.12 0.23 1.53 16 29 C -0.12 0.83 8.57 22.23 0.19 1.02 16 30 C -0.07 0.28 9.76 22.54 0.22 0.50 16 31 H 0.14 -1.07 8.06 -2.91 -0.02 -1.09 16 32 H 0.16 -2.15 8.05 -2.91 -0.02 -2.18 16 33 H 0.10 -0.64 6.32 -2.39 -0.02 -0.65 16 34 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.42 -6.61 8.70 -92.71 -0.81 -7.42 16 36 H 0.16 -1.92 8.12 -2.39 -0.02 -1.94 16 37 H 0.15 -1.67 8.14 -2.39 -0.02 -1.69 16 38 H 0.18 0.57 6.30 -2.91 -0.02 0.55 16 39 H 0.08 0.08 7.96 -2.39 -0.02 0.06 16 40 H 0.40 -2.38 8.74 -74.06 -0.65 -3.03 16 41 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 42 H -0.29 -1.49 7.04 99.48 0.70 -0.79 16 43 H 0.13 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.14 0.15 8.06 -2.91 -0.02 0.13 16 45 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 46 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 47 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 48 H 0.10 -1.03 7.71 -2.39 -0.02 -1.05 16 49 H 0.15 -1.36 6.66 -2.91 -0.02 -1.38 16 50 H 0.14 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -36.82 429.79 2.38 -34.44 By element: Atomic # 1 Polarization: -23.63 SS G_CDS: -0.42 Total: -24.05 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.79 Total: 6.96 kcal Atomic # 7 Polarization: -2.77 SS G_CDS: -3.14 Total: -5.91 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.96 Total: -12.62 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.11 Total: 1.18 kcal Total: -36.82 2.38 -34.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.732 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds