Wall clock time and date at job start Tue Mar 9 2021 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34704 * 117.00337 * 2 1 4 4 O 1.21465 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00180 * 179.97438 * 3 2 1 6 6 C 1.39613 * 120.14733 * 0.02728 * 5 3 2 7 7 C 1.37966 * 119.84379 * 179.97438 * 6 5 3 8 8 C 1.38350 * 120.15309 * 359.72374 * 7 6 5 9 9 C 1.38392 * 120.29899 * 0.55475 * 8 7 6 10 10 C 1.50698 * 119.92228 * 179.72414 * 9 8 7 11 11 H 1.09000 * 112.84970 * 190.92275 * 10 9 8 12 12 C 1.53960 * 113.66577 * 322.16278 * 10 9 8 13 13 C 1.53782 * 87.01954 * 139.93605 * 12 10 9 14 14 H 1.09000 * 113.60898 * 220.04914 * 13 12 10 15 15 N 1.46497 * 113.61678 * 89.22940 * 13 12 10 16 16 C 1.34773 * 119.99865 * 105.85888 * 15 13 12 17 17 O 1.21569 * 120.00372 * 0.02562 * 16 15 13 18 18 C 1.47672 * 119.99966 * 179.97438 * 16 15 13 19 19 C 1.40004 * 120.45327 * 353.97482 * 18 16 15 20 20 N 1.31302 * 121.37664 * 179.73625 * 19 18 16 21 21 C 1.32824 * 121.89247 * 0.55158 * 20 19 18 22 22 N 1.37153 * 132.96595 * 179.74503 * 21 20 19 23 23 C 1.36952 * 110.10931 * 179.97438 * 22 21 20 24 24 C 1.34171 * 109.95476 * 0.02562 * 23 22 21 25 25 C 1.50704 * 126.60041 * 179.97438 * 24 23 22 26 26 O 1.42901 * 109.46813 * 254.99775 * 25 24 23 27 27 Si 1.86296 * 109.46826 * 14.99425 * 25 24 23 28 28 C 1.41016 * 120.07929 * 359.71877 * 21 20 19 29 29 C 1.39282 * 119.61871 * 0.02562 * 28 21 20 30 30 C 1.50703 * 121.03104 * 180.02562 * 29 28 21 31 31 C 1.53782 * 87.17345 * 334.63832 * 13 12 10 32 32 C 1.37926 * 120.14957 * 359.44518 * 9 8 7 33 33 H 1.09002 * 109.47198 * 59.99573 * 1 2 3 34 34 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46977 * 300.00024 * 1 2 3 36 36 H 1.07992 * 120.07660 * 359.97438 * 6 5 3 37 37 H 1.08000 * 119.92309 * 180.02562 * 7 6 5 38 38 H 1.07997 * 119.85062 * 180.27269 * 8 7 6 39 39 H 1.09006 * 113.61169 * 25.41274 * 12 10 9 40 40 H 1.09006 * 113.66336 * 254.46752 * 12 10 9 41 41 H 0.96999 * 119.99786 * 285.86979 * 15 13 12 42 42 H 1.08002 * 119.30949 * 359.97438 * 19 18 16 43 43 H 0.96993 * 124.94708 * 0.02562 * 22 21 20 44 44 H 1.08007 * 125.02122 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46952 * 134.99219 * 25 24 23 46 46 H 0.96693 * 113.99992 * 59.99696 * 26 25 24 47 47 H 1.48502 * 110.00286 * 58.68675 * 27 25 24 48 48 H 1.48503 * 110.00211 * 180.02562 * 27 25 24 49 49 H 1.08992 * 109.47416 * 263.76039 * 30 29 28 50 50 H 1.09005 * 109.46939 * 23.76284 * 30 29 28 51 51 H 1.09004 * 109.47166 * 143.75655 * 30 29 28 52 52 H 1.08997 * 113.61578 * 139.93746 * 31 13 12 53 53 H 1.09001 * 113.61560 * 270.84780 * 31 13 12 54 54 H 1.07997 * 120.07108 * 180.29866 * 32 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3022 0.1085 0.0005 7 6 5.6796 0.1880 0.0005 8 6 6.3045 1.4223 -0.0052 9 6 5.5538 2.5849 0.0006 10 6 6.2434 3.9249 0.0006 11 1 5.5609 4.7521 0.1957 12 6 7.5201 3.9630 0.8602 13 6 8.1496 4.8136 -0.2557 14 1 9.1897 4.5617 -0.4625 15 7 7.9353 6.2531 -0.0881 16 6 8.9508 7.0434 0.3125 17 8 10.0448 6.5619 0.5343 18 6 8.7350 8.4945 0.4809 19 6 7.5186 9.0790 0.1081 20 7 7.3054 10.3662 0.2547 21 6 8.2312 11.1788 0.7514 22 7 8.2570 12.5283 0.9953 23 6 9.4681 12.8881 1.5239 24 6 10.2562 11.8085 1.6396 25 6 11.6644 11.7772 2.1755 26 8 12.5835 11.6311 1.0911 27 14 12.0196 13.3661 3.0809 28 6 9.4843 10.6658 1.1449 29 6 9.7442 9.3042 1.0089 30 6 11.0721 8.7219 1.4197 31 6 7.1517 4.1504 -1.2197 32 6 4.1761 2.5200 0.0006 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 3.8157 -0.8556 0.0005 37 1 6.2713 -0.7155 0.0001 38 1 7.3830 1.4788 -0.0096 39 1 7.9917 2.9881 0.9849 40 1 7.3979 4.4988 1.8015 41 1 7.0624 6.6373 -0.2652 42 1 6.7380 8.4573 -0.3051 43 1 7.5240 13.1387 0.8197 44 1 9.7477 13.8927 1.8052 45 1 11.7738 10.9364 2.8605 46 1 12.5414 12.3456 0.4409 47 1 11.0503 13.5455 4.1916 48 1 13.4056 13.3482 3.6138 49 1 11.7201 8.6433 0.5469 50 1 11.5389 9.3697 2.1617 51 1 10.9176 7.7314 1.8480 52 1 6.7326 4.8372 -1.9550 53 1 7.5223 3.2269 -1.6646 54 1 3.5916 3.4281 0.0003 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15508394_12890568.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 20:19:58 Heat of formation + Delta-G solvation = -15.654335 kcal Electronic energy + Delta-G solvation = -39078.663368 eV Core-core repulsion = 33948.917687 eV Total energy + Delta-G solvation = -5129.745681 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.172 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.86333 -41.84289 -41.41342 -40.40903 -39.06005 -38.48352 -37.68207 -37.57239 -35.24090 -34.64166 -32.46471 -32.22590 -31.86860 -30.80576 -28.97359 -28.71588 -26.69054 -26.65981 -26.11960 -25.19867 -24.63327 -23.95825 -22.86616 -22.18868 -21.82453 -20.65719 -20.23376 -19.38430 -18.83826 -18.65726 -18.25978 -17.62907 -17.49332 -17.47746 -17.08909 -17.03578 -16.69757 -16.54045 -16.18299 -16.13041 -15.79808 -15.52556 -15.49865 -15.24145 -14.89458 -14.70125 -14.63412 -14.59346 -14.39712 -14.20713 -14.07747 -13.93998 -13.77282 -13.68172 -13.45380 -13.32359 -13.17930 -13.14726 -13.01791 -12.83740 -12.66282 -12.30615 -12.01992 -11.90835 -11.82619 -11.78401 -11.70012 -11.23581 -11.21475 -11.14548 -10.53179 -10.19598 -10.15153 -10.05996 -9.74145 -9.62786 -9.11352 -4.98529 -0.38183 -0.36185 -0.09043 0.31278 1.35273 1.40953 1.43150 1.61236 1.65679 1.74721 1.78198 2.02438 2.05710 2.68977 2.73878 3.29640 3.44331 3.47932 3.60445 3.60929 3.61953 3.63413 3.68948 3.74850 3.77008 3.88988 3.97904 4.13233 4.13978 4.16042 4.23310 4.26385 4.26400 4.28835 4.30504 4.35143 4.42325 4.58464 4.63942 4.66774 4.69857 4.76584 4.77917 4.80557 4.87989 4.95339 4.97939 5.01460 5.05223 5.12951 5.17109 5.21021 5.23109 5.26761 5.37700 5.40546 5.49437 5.64937 5.72998 5.84663 6.22793 6.45266 6.56087 6.81956 6.88817 7.15051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.506 3.494 4 O -0.540 6.540 5 C -0.147 4.147 6 C -0.068 4.068 7 C -0.128 4.128 8 C -0.076 4.076 9 C -0.082 4.082 10 C -0.070 4.070 11 H 0.106 0.894 12 C -0.141 4.141 13 C 0.117 3.883 14 H 0.093 0.907 15 N -0.698 5.698 16 C 0.574 3.426 17 O -0.563 6.563 18 C -0.241 4.241 19 C 0.179 3.821 20 N -0.516 5.516 21 C 0.287 3.713 22 N -0.560 5.560 23 C 0.096 3.904 24 C -0.207 4.207 25 C -0.049 4.049 26 O -0.557 6.557 27 Si 0.802 3.198 28 C -0.167 4.167 29 C 0.060 3.940 30 C -0.110 4.110 31 C -0.123 4.123 32 C -0.063 4.063 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.412 0.588 42 H 0.192 0.808 43 H 0.439 0.561 44 H 0.232 0.768 45 H 0.096 0.904 46 H 0.394 0.606 47 H -0.281 1.281 48 H -0.305 1.305 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 2.786 -1.863 3.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.432 6.432 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.145 4.145 8 C -0.094 4.094 9 C -0.082 4.082 10 C -0.088 4.088 11 H 0.124 0.876 12 C -0.179 4.179 13 C 0.012 3.988 14 H 0.111 0.889 15 N -0.349 5.349 16 C 0.362 3.638 17 O -0.443 6.443 18 C -0.249 4.249 19 C 0.010 3.990 20 N -0.230 5.230 21 C 0.053 3.947 22 N -0.167 5.167 23 C -0.031 4.031 24 C -0.214 4.214 25 C -0.158 4.158 26 O -0.365 6.365 27 Si 0.707 3.293 28 C -0.174 4.174 29 C 0.052 3.948 30 C -0.166 4.166 31 C -0.161 4.161 32 C -0.081 4.081 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.250 0.750 42 H 0.209 0.791 43 H 0.280 0.720 44 H 0.248 0.752 45 H 0.113 0.887 46 H 0.244 0.756 47 H -0.207 1.207 48 H -0.233 1.233 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.106 0.894 53 H 0.128 0.872 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.836 3.095 -0.882 3.325 hybrid contribution -0.756 -0.692 0.207 1.046 sum -1.592 2.403 -0.675 2.960 Atomic orbital electron populations 1.23582 0.74321 1.05929 1.02583 1.86529 1.25186 1.31870 1.83789 1.21647 0.89945 0.81397 0.71757 1.90819 1.67671 1.37062 1.47639 1.19175 0.88191 0.96106 1.11345 1.21668 0.94691 0.97726 0.94512 1.21504 0.93900 0.99268 0.99863 1.21661 1.01649 0.91435 0.94671 1.19743 0.91998 0.96032 1.00417 1.21650 0.95440 0.93925 0.97780 0.87626 1.23616 0.95455 1.01243 0.97604 1.21875 1.00478 0.79111 0.97346 0.88877 1.45467 1.13516 1.07559 1.68407 1.17953 0.84040 0.85677 0.76113 1.90740 1.25582 1.76338 1.51646 1.20500 0.97739 0.94251 1.12370 1.22939 0.94538 0.89064 0.92444 1.66505 1.32753 1.05035 1.18668 1.18790 0.91130 0.86819 0.97964 1.41630 1.16247 1.04734 1.54065 1.22405 0.82998 1.00522 0.97155 1.20814 0.98168 0.91460 1.10947 1.24785 0.84803 1.11907 0.94316 1.86493 1.58809 1.53393 1.37793 0.94070 0.76391 0.78657 0.80201 1.19780 0.96222 0.93728 1.07655 1.20068 0.95159 0.91007 0.88610 1.20985 0.92264 1.01438 1.01945 1.23405 0.94811 1.02006 0.95891 1.21211 0.94784 0.96383 0.95731 0.91887 0.84788 0.91981 0.83556 0.82462 0.82883 0.87607 0.91664 0.75015 0.79100 0.71970 0.75213 0.88676 0.75629 1.20746 1.23276 0.90699 0.91199 0.89966 0.89431 0.87243 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.78 9.82 -56.14 -0.55 -2.33 16 3 C 0.51 4.21 7.90 70.33 0.56 4.76 16 4 O -0.54 -7.48 16.14 19.95 0.32 -7.16 16 5 C -0.15 -0.65 5.87 -20.10 -0.12 -0.76 16 6 C -0.07 0.00 9.62 22.54 0.22 0.22 16 7 C -0.13 0.47 10.03 22.23 0.22 0.69 16 8 C -0.08 0.31 8.59 22.33 0.19 0.50 16 9 C -0.08 0.14 5.28 -19.90 -0.11 0.04 16 10 C -0.07 0.33 3.86 -10.95 -0.04 0.28 16 11 H 0.11 -0.59 8.09 -2.39 -0.02 -0.61 16 12 C -0.14 0.47 7.27 31.18 0.23 0.70 16 13 C 0.12 -0.26 4.29 45.52 0.20 -0.07 16 14 H 0.09 0.13 7.50 -2.39 -0.02 0.11 16 15 N -0.70 0.83 5.22 -443.08 -2.31 -1.49 16 16 C 0.57 3.49 7.72 86.74 0.67 4.16 16 17 O -0.56 -7.21 13.11 -3.93 -0.05 -7.26 16 18 C -0.24 -1.44 5.89 -19.99 -0.12 -1.55 16 19 C 0.18 0.43 10.67 85.20 0.91 1.34 16 20 N -0.52 -2.76 10.37 -191.75 -1.99 -4.75 16 21 C 0.29 1.29 8.42 134.02 1.13 2.42 16 22 N -0.56 1.91 6.04 -192.25 -1.16 0.75 16 23 C 0.10 -0.61 10.44 82.97 0.87 0.25 16 24 C -0.21 -0.01 5.57 -18.64 -0.10 -0.12 16 25 C -0.05 0.03 2.06 71.24 0.15 0.17 16 26 O -0.56 -0.34 12.88 -148.98 -1.92 -2.26 16 27 Si 0.80 -4.18 30.76 68.60 2.11 -2.07 16 28 C -0.17 -1.02 6.16 -20.19 -0.12 -1.14 16 29 C 0.06 0.51 5.98 -19.25 -0.12 0.39 16 30 C -0.11 -1.02 8.69 71.24 0.62 -0.40 16 31 C -0.12 0.76 7.29 31.12 0.23 0.98 16 32 C -0.06 -0.17 9.25 22.54 0.21 0.04 16 33 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 35 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.15 -0.36 7.61 -2.91 -0.02 -0.38 16 37 H 0.16 -1.35 8.06 -2.91 -0.02 -1.38 16 38 H 0.15 -1.31 6.67 -2.91 -0.02 -1.33 16 39 H 0.11 -0.56 6.33 -2.38 -0.02 -0.57 16 40 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 41 H 0.41 -2.71 6.78 -92.71 -0.63 -3.34 16 42 H 0.19 -1.07 6.43 -2.91 -0.02 -1.08 16 43 H 0.44 -3.95 8.96 -92.71 -0.83 -4.78 16 44 H 0.23 -3.80 6.36 -2.91 -0.02 -3.82 16 45 H 0.10 0.28 6.05 -2.39 -0.01 0.26 16 46 H 0.39 -3.21 8.70 -74.06 -0.64 -3.85 16 47 H -0.28 0.24 7.11 99.48 0.71 0.94 16 48 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 49 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.54 5.06 -2.38 -0.01 0.53 16 51 H 0.08 0.97 5.94 -2.39 -0.01 0.95 16 52 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 53 H 0.11 -0.82 7.71 -2.39 -0.02 -0.84 16 54 H 0.13 0.45 7.64 -2.91 -0.02 0.43 16 Total: 0.00 -32.57 442.69 0.26 -32.31 By element: Atomic # 1 Polarization: -18.83 SS G_CDS: -1.04 Total: -19.87 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.85 Total: 14.12 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -5.46 Total: -5.49 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -2.20 Total: -19.00 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.11 Total: -2.07 kcal Total: -32.57 0.26 -32.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15508394_12890568.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.652 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds