Wall clock time and date at job start Tue Mar 9 2021 13:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35981 * 116.99884 * 2 1 4 4 C 1.38684 * 119.99817 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.99845 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99797 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46964 * 104.99727 * 6 5 4 8 8 Si 1.86301 * 109.47146 * 344.99645 * 6 5 4 9 9 C 1.38674 * 120.00196 * 0.24987 * 5 4 3 10 10 O 1.35976 * 120.00133 * 179.72866 * 9 5 4 11 11 C 1.42907 * 117.00272 * 179.97438 * 10 9 5 12 12 C 1.50694 * 109.47296 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00156 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99975 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99954 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47366 * 35.00167 * 15 14 12 17 17 C 1.53006 * 109.47023 * 155.00446 * 15 14 12 18 18 C 1.53002 * 109.47062 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47306 * 300.00101 * 18 17 15 20 20 H 1.09000 * 109.47137 * 299.99722 * 19 18 17 21 21 C 1.50694 * 109.47324 * 179.97438 * 19 18 17 22 22 N 1.30715 * 125.52892 * 300.02222 * 21 19 18 23 23 N 1.40448 * 106.79787 * 179.97438 * 22 21 19 24 24 C 1.34428 * 106.35035 * 0.02562 * 23 22 21 25 25 C 1.50703 * 125.96258 * 179.97438 * 24 23 22 26 26 N 1.30834 * 108.07702 * 359.74888 * 24 23 22 27 27 C 1.53001 * 109.47227 * 59.99625 * 19 18 17 28 28 C 1.52995 * 109.47345 * 300.00128 * 27 19 18 29 29 C 1.38720 * 119.99663 * 359.51746 * 9 5 4 30 30 C 1.38107 * 120.00499 * 0.46439 * 29 9 5 31 31 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47107 * 300.00448 * 1 2 3 33 33 H 1.09001 * 109.47187 * 59.99621 * 1 2 3 34 34 H 1.07999 * 119.99714 * 0.04006 * 4 3 2 35 35 H 1.09002 * 109.46959 * 224.99698 * 6 5 4 36 36 H 0.96701 * 113.99881 * 60.00309 * 7 6 5 37 37 H 1.48494 * 109.99914 * 178.67922 * 8 6 5 38 38 H 1.48493 * 110.00101 * 300.00019 * 8 6 5 39 39 H 1.09001 * 109.46577 * 300.00274 * 11 10 9 40 40 H 1.08999 * 109.46708 * 60.00023 * 11 10 9 41 41 H 0.97000 * 120.00427 * 0.02562 * 14 12 11 42 42 H 1.08998 * 109.46898 * 299.99982 * 17 15 14 43 43 H 1.09000 * 109.47289 * 60.00211 * 17 15 14 44 44 H 1.09000 * 109.46796 * 60.00032 * 18 17 15 45 45 H 1.08997 * 109.46815 * 179.97438 * 18 17 15 46 46 H 0.96989 * 126.82327 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47394 * 90.02118 * 25 24 23 48 48 H 1.08994 * 109.46979 * 210.02589 * 25 24 23 49 49 H 1.09000 * 109.46699 * 330.02219 * 25 24 23 50 50 H 1.08997 * 109.46971 * 60.00547 * 27 19 18 51 51 H 1.08998 * 109.46983 * 180.02562 * 27 19 18 52 52 H 1.08997 * 109.47428 * 300.00139 * 28 27 19 53 53 H 1.08998 * 109.47270 * 179.97438 * 28 27 19 54 54 H 1.08006 * 119.99915 * 180.23182 * 29 9 5 55 55 H 1.08000 * 120.00496 * 179.76890 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4312 1.2842 -0.0005 5 6 4.0584 2.5151 0.0000 6 6 5.5634 2.5940 0.0000 7 8 6.0207 2.9676 -1.3012 8 14 6.2723 0.9320 0.4540 9 6 3.3032 3.6782 0.0063 10 8 3.9205 4.8897 0.0124 11 6 3.0806 6.0459 0.0181 12 6 3.9348 7.2873 0.0251 13 8 5.1439 7.1916 0.0246 14 7 3.3552 8.5040 0.0307 15 6 4.1857 9.7109 0.0368 16 1 5.0853 9.5360 -0.5531 17 6 3.3979 10.8751 -0.5674 18 6 4.2649 12.1357 -0.5604 19 6 4.6566 12.4774 0.8785 20 1 3.7567 12.6521 1.4683 21 6 5.5111 13.7186 0.8854 22 7 6.6598 13.8534 0.2764 23 7 7.1093 15.1573 0.5416 24 6 6.1712 15.7310 1.3148 25 6 6.2104 17.1360 1.8585 26 7 5.2158 14.8585 1.5089 27 6 5.4443 11.3132 1.4828 28 6 4.5773 10.0527 1.4759 29 6 1.9179 3.6056 0.0020 30 6 1.2908 2.3751 0.0011 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 4.0194 0.3784 -0.0016 35 1 5.8882 3.3384 0.7270 36 1 5.6901 3.8247 -1.6032 37 1 7.7559 0.9881 0.4264 38 1 5.8041 0.5320 1.8052 39 1 2.4514 6.0422 -0.8719 40 1 2.4513 6.0333 0.9081 41 1 2.3883 8.5807 0.0307 42 1 3.1185 10.6315 -1.5924 43 1 2.4982 11.0501 0.0226 44 1 5.1648 11.9610 -1.1502 45 1 3.7038 12.9649 -0.9913 46 1 7.9329 15.5631 0.2290 47 1 5.7342 17.8134 1.1496 48 1 5.6788 17.1726 2.8093 49 1 7.2467 17.4382 2.0097 50 1 6.3442 11.1385 0.8931 51 1 5.7229 11.5565 2.5081 52 1 3.6774 10.2273 2.0656 53 1 5.1386 9.2232 1.9060 54 1 1.3297 4.5114 0.0031 55 1 0.2123 2.3185 0.0014 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_4974302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:57 Heat of formation + Delta-G solvation = -38.868529 kcal Electronic energy + Delta-G solvation = -37405.230843 eV Core-core repulsion = 32410.881933 eV Total energy + Delta-G solvation = -4994.348911 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.25286 -41.83993 -41.11322 -40.04011 -39.19846 -38.09424 -36.93279 -35.80932 -33.83892 -33.40247 -32.81723 -31.89533 -31.48571 -30.64064 -29.17958 -28.53262 -27.91145 -26.59428 -24.88560 -23.86227 -23.61203 -22.41271 -22.37312 -21.61350 -21.49651 -20.59292 -19.53159 -18.94135 -18.80181 -18.50944 -18.04593 -17.49118 -17.36449 -17.26363 -16.76737 -16.60607 -16.30647 -16.07621 -15.69773 -15.63206 -15.45537 -15.36946 -15.21691 -15.12959 -14.77478 -14.52246 -14.19097 -14.13453 -14.04709 -13.98901 -13.70066 -13.54205 -13.51946 -13.40657 -13.27377 -13.03498 -12.87036 -12.51946 -12.34207 -12.32510 -12.28287 -12.19317 -12.03093 -11.68171 -11.48967 -11.43785 -11.30772 -11.23138 -11.12311 -11.06942 -10.94792 -10.49251 -10.16904 -10.09457 -8.81700 -4.94735 0.06827 0.33792 0.53129 1.32600 1.44464 1.45783 1.57084 1.67530 1.76189 1.90526 2.35482 2.54668 2.57306 2.91225 3.44397 3.50429 3.55733 3.63590 3.68096 3.74133 3.79252 3.85328 3.95804 4.04808 4.07768 4.09817 4.13660 4.16231 4.18302 4.21144 4.28167 4.34252 4.35889 4.42856 4.45731 4.46399 4.60045 4.62929 4.64828 4.70971 4.79425 4.80539 4.97292 4.98393 4.99626 5.01172 5.06468 5.10028 5.12919 5.20386 5.21182 5.23626 5.31146 5.36293 5.41968 5.47151 6.13464 6.14072 6.42787 6.48654 6.51178 7.03101 7.14607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.082 4.082 7 O -0.545 6.545 8 Si 0.811 3.189 9 C 0.090 3.910 10 O -0.317 6.317 11 C 0.038 3.962 12 C 0.512 3.488 13 O -0.571 6.571 14 N -0.704 5.704 15 C 0.148 3.852 16 H 0.062 0.938 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.010 3.990 20 H 0.110 0.890 21 C 0.224 3.776 22 N -0.343 5.343 23 N -0.480 5.480 24 C 0.285 3.715 25 C -0.077 4.077 26 N -0.573 5.573 27 C -0.099 4.099 28 C -0.119 4.119 29 C -0.159 4.159 30 C -0.161 4.161 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.372 0.628 37 H -0.295 1.295 38 H -0.264 1.264 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.422 0.578 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.453 0.547 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.090 0.910 53 H 0.049 0.951 54 H 0.168 0.832 55 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 5.576 -0.045 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.189 4.189 7 O -0.351 6.351 8 Si 0.713 3.287 9 C 0.045 3.955 10 O -0.231 6.231 11 C -0.040 4.040 12 C 0.298 3.702 13 O -0.450 6.450 14 N -0.358 5.358 15 C 0.044 3.956 16 H 0.080 0.920 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.011 4.011 20 H 0.128 0.872 21 C -0.058 4.058 22 N -0.173 5.173 23 N -0.200 5.200 24 C 0.008 3.992 25 C -0.136 4.136 26 N -0.303 5.303 27 C -0.138 4.138 28 C -0.158 4.158 29 C -0.177 4.177 30 C -0.179 4.179 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.220 0.780 37 H -0.222 1.222 38 H -0.189 1.189 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.261 0.739 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.302 0.698 47 H 0.127 0.873 48 H 0.119 0.881 49 H 0.127 0.873 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.108 0.892 53 H 0.067 0.933 54 H 0.186 0.814 55 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.385 3.848 0.317 9.231 hybrid contribution 0.148 2.431 0.249 2.448 sum -8.237 6.280 0.566 10.373 Atomic orbital electron populations 1.23359 0.76366 1.05614 1.02393 1.86086 1.23412 1.26313 1.88938 1.18978 0.91914 0.85381 0.99214 1.20177 0.92457 0.96742 1.04286 1.19446 0.95957 0.91059 1.05598 1.25515 0.92942 1.12464 0.87975 1.86657 1.74238 1.42212 1.32022 0.92242 0.76192 0.79021 0.81291 1.18804 0.91771 0.84243 1.00726 1.86088 1.35613 1.11966 1.89426 1.22732 0.92604 0.81805 1.06868 1.20554 0.88336 0.85548 0.75714 1.90780 1.16803 1.87367 1.50021 1.45710 1.11484 1.03904 1.74668 1.20952 0.94366 0.83994 0.96329 0.91954 1.21726 0.98745 0.91659 1.02795 1.21437 1.00215 0.98171 0.94115 1.19681 0.96182 0.86208 0.99000 0.87196 1.24589 0.92150 0.95786 0.93315 1.77925 1.15549 0.97247 1.26542 1.48005 1.21473 1.09985 1.40527 1.25216 0.84902 0.98443 0.90675 1.20641 1.06185 0.83735 1.03025 1.70396 1.29494 1.01763 1.28695 1.21400 0.98209 0.93504 1.00704 1.21826 1.00615 0.96372 0.96979 1.21379 0.92002 1.00062 1.04283 1.21426 1.01609 0.90901 1.04008 0.86757 0.91526 0.91369 0.83108 0.92179 0.77998 1.22250 1.18937 0.85511 0.85926 0.73940 0.89475 0.88256 0.92465 0.90638 0.69835 0.87340 0.88106 0.87297 0.92865 0.92045 0.89157 0.93259 0.81433 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.79 10.50 -93.34 -0.98 -1.77 16 3 C 0.09 0.27 6.69 22.49 0.15 0.42 16 4 C -0.12 -0.58 8.59 22.36 0.19 -0.39 16 5 C -0.12 -0.80 5.27 -19.78 -0.10 -0.90 16 6 C -0.08 -0.74 2.33 71.24 0.17 -0.57 16 7 O -0.55 -5.91 12.65 -148.98 -1.89 -7.79 16 8 Si 0.81 4.98 30.17 68.60 2.07 7.05 16 9 C 0.09 0.35 6.62 22.49 0.15 0.50 16 10 O -0.32 -1.63 8.58 -74.25 -0.64 -2.26 16 11 C 0.04 -0.15 5.22 71.23 0.37 0.22 16 12 C 0.51 1.16 7.87 87.66 0.69 1.85 16 13 O -0.57 -8.22 16.16 15.98 0.26 -7.96 16 14 N -0.70 3.36 5.08 -442.53 -2.25 1.12 16 15 C 0.15 -0.17 2.46 44.99 0.11 -0.06 16 16 H 0.06 0.35 7.58 -2.39 -0.02 0.34 16 17 C -0.11 0.67 5.39 30.60 0.16 0.83 16 18 C -0.10 0.09 5.19 30.59 0.16 0.24 16 19 C 0.01 0.02 2.66 -11.54 -0.03 -0.01 16 20 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 21 C 0.22 1.68 6.65 138.63 0.92 2.60 16 22 N -0.34 -2.95 12.80 -51.34 -0.66 -3.60 16 23 N -0.48 -1.01 7.45 -50.70 -0.38 -1.39 16 24 C 0.29 0.52 8.24 138.23 1.14 1.66 16 25 C -0.08 0.60 10.51 71.24 0.75 1.35 16 26 N -0.57 -4.35 11.19 -179.73 -2.01 -6.36 16 27 C -0.10 -0.31 5.18 30.59 0.16 -0.15 16 28 C -0.12 -0.05 5.49 30.59 0.17 0.12 16 29 C -0.16 0.35 9.03 22.35 0.20 0.55 16 30 C -0.16 0.28 9.03 22.35 0.20 0.48 16 31 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.07 -0.53 7.66 -2.38 -0.02 -0.55 16 33 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 34 H 0.15 0.33 5.13 -2.91 -0.01 0.31 16 35 H 0.06 0.71 7.82 -2.39 -0.02 0.69 16 36 H 0.37 3.12 8.63 -74.06 -0.64 2.48 16 37 H -0.29 -3.69 7.11 99.48 0.71 -2.99 16 38 H -0.26 -2.10 7.11 99.48 0.71 -1.39 16 39 H 0.13 -1.35 7.65 -2.39 -0.02 -1.37 16 40 H 0.12 -1.23 7.67 -2.39 -0.02 -1.25 16 41 H 0.42 -5.53 8.60 -92.71 -0.80 -6.33 16 42 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.45 -2.21 8.96 -213.11 -1.91 -4.12 16 47 H 0.11 -1.12 8.14 -2.39 -0.02 -1.14 16 48 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 49 H 0.11 -1.37 8.14 -2.39 -0.02 -1.39 16 50 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 52 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 53 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 54 H 0.17 -1.68 6.29 -2.91 -0.02 -1.70 16 55 H 0.16 -1.23 6.29 -2.91 -0.02 -1.25 16 Total: 0.00 -34.22 446.81 -2.14 -36.37 By element: Atomic # 1 Polarization: -20.79 SS G_CDS: -2.35 Total: -23.14 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.67 Total: 9.75 kcal Atomic # 7 Polarization: -4.95 SS G_CDS: -5.29 Total: -10.24 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -3.24 Total: -19.79 kcal Atomic # 14 Polarization: 4.98 SS G_CDS: 2.07 Total: 7.05 kcal Total: -34.22 -2.14 -36.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_4974302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.503 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds